Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12840

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. 1-ethyl-3-methylimidazolium lysine 1 mM
1,327,553	-				+0.3
1,327,679	-				-1.5
1,327,719	+				+0.5
1,327,730	+		PGA1_c12830	0.10	+1.0
1,327,783	+		PGA1_c12830	0.19	+1.5
1,327,857	+		PGA1_c12830	0.30	-0.7
1,327,860	-		PGA1_c12830	0.31	-1.1
1,327,898	-		PGA1_c12830	0.37	-0.9
1,327,983	+		PGA1_c12830	0.51	+0.7
1,328,009	+		PGA1_c12830	0.55	+1.1
1,328,009	+		PGA1_c12830	0.55	+1.3
1,328,009	+		PGA1_c12830	0.55	+1.1
1,328,009	+		PGA1_c12830	0.55	-0.7
1,328,009	+		PGA1_c12830	0.55	-0.2
1,328,009	+		PGA1_c12830	0.55	-1.3
1,328,012	-		PGA1_c12830	0.55	-0.6
1,328,016	+		PGA1_c12830	0.56	-0.7
1,328,017	-		PGA1_c12830	0.56	-0.0
1,328,017	-		PGA1_c12830	0.56	-1.0
1,328,056	-		PGA1_c12830	0.62	+0.9
1,328,074	-		PGA1_c12830	0.65	+0.6
1,328,079	+		PGA1_c12830	0.66	+0.7
1,328,134	-		PGA1_c12830	0.75	+0.1
1,328,295	+				+0.0
1,328,295	+				-0.3
1,328,323	+				-0.1
1,328,418	-				+0.8
1,328,465	-				+0.3
1,328,476	+				+0.2
1,328,476	+				-0.5
1,328,476	-				-1.1
1,328,484	-				+1.2
1,328,531	-				+0.0
1,328,638	-				-0.6
1,328,678	+		PGA1_c12840	0.12	+0.3
1,328,680	-		PGA1_c12840	0.12	-2.0
1,328,680	-		PGA1_c12840	0.12	-0.4
1,328,755	+		PGA1_c12840	0.18	-0.0
1,328,801	+		PGA1_c12840	0.22	-1.1
1,328,801	+		PGA1_c12840	0.22	+0.4
1,328,809	-		PGA1_c12840	0.22	-0.2
1,328,828	+		PGA1_c12840	0.24	+0.3
1,328,845	+		PGA1_c12840	0.25	-0.5
1,328,845	+		PGA1_c12840	0.25	+0.0
1,328,887	-		PGA1_c12840	0.29	-0.6
1,328,987	+		PGA1_c12840	0.37	+2.3
1,328,987	+		PGA1_c12840	0.37	+1.4
1,328,987	+		PGA1_c12840	0.37	+1.7
1,328,995	-		PGA1_c12840	0.37	+1.5
1,328,995	-		PGA1_c12840	0.37	+0.3
1,328,995	-		PGA1_c12840	0.37	+1.6
1,328,995	-		PGA1_c12840	0.37	+0.6
1,329,000	-		PGA1_c12840	0.38	+0.3
1,329,045	-		PGA1_c12840	0.41	+0.4
1,329,069	-		PGA1_c12840	0.43	-1.3
1,329,158	+		PGA1_c12840	0.50	-0.1
1,329,163	+		PGA1_c12840	0.51	+0.3
1,329,163	+		PGA1_c12840	0.51	+0.2
1,329,169	+		PGA1_c12840	0.51	+0.3
1,329,173	-		PGA1_c12840	0.51	+0.8
1,329,188	+		PGA1_c12840	0.53	+0.5
1,329,196	-		PGA1_c12840	0.53	+0.1
1,329,245	+		PGA1_c12840	0.57	+0.7
1,329,261	+		PGA1_c12840	0.59	+0.6
1,329,263	-		PGA1_c12840	0.59	+2.0
1,329,338	+		PGA1_c12840	0.65	-0.4
1,329,346	-		PGA1_c12840	0.65	-0.6
1,329,406	+		PGA1_c12840	0.70	-0.2
1,329,449	+		PGA1_c12840	0.74	+2.2
1,329,539	-		PGA1_c12840	0.81	+0.8
1,329,554	+		PGA1_c12840	0.82	+0.3
1,329,575	+		PGA1_c12840	0.84	+1.3
1,329,577	+		PGA1_c12840	0.84	+0.7
1,329,682	+				+0.6
1,329,683	-				+0.7
1,329,748	+				+0.8
1,329,750	+				-0.2
1,329,750	+				+2.1
1,329,758	-				-0.1
1,329,758	-				-1.0
1,329,758	-				+0.0
1,329,758	-				-0.6
1,329,758	-				+0.7
1,329,758	-				+0.6
1,329,758	-				+0.7
1,329,758	-				-2.4
1,329,832	+				+0.4
1,329,840	-				-0.7
1,329,885	+				-0.8
1,329,885	+				-0.5
1,329,893	+				-0.9
1,329,950	-				+0.3
1,329,950	-				+0.2
1,329,997	+				+0.4
1,330,042	+				+0.1
1,330,072	+		PGA1_c12850	0.12	+0.2
1,330,083	-		PGA1_c12850	0.12	+1.3
1,330,153	+		PGA1_c12850	0.17	+0.8
1,330,154	-		PGA1_c12850	0.17	+0.6
1,330,161	-		PGA1_c12850	0.18	+0.5
1,330,161	-		PGA1_c12850	0.18	+1.2
1,330,178	+		PGA1_c12850	0.19	+1.9
1,330,178	+		PGA1_c12850	0.19	-0.5
1,330,178	+		PGA1_c12850	0.19	+0.0
1,330,178	+		PGA1_c12850	0.19	+0.2
1,330,235	-		PGA1_c12850	0.23	-0.3
1,330,276	+		PGA1_c12850	0.26	-0.2
1,330,284	-		PGA1_c12850	0.26	-0.4
1,330,336	+		PGA1_c12850	0.30	+1.0
1,330,336	+		PGA1_c12850	0.30	+1.5
1,330,344	-		PGA1_c12850	0.30	+1.5
1,330,346	+		PGA1_c12850	0.30	-0.8
1,330,353	+		PGA1_c12850	0.31	-0.6
1,330,353	+		PGA1_c12850	0.31	-0.3
1,330,354	-		PGA1_c12850	0.31	+0.4
1,330,426	-		PGA1_c12850	0.36	+1.8
1,330,429	-		PGA1_c12850	0.36	-0.3
1,330,476	+		PGA1_c12850	0.39	-0.5
1,330,481	+		PGA1_c12850	0.40	-0.1
1,330,481	+		PGA1_c12850	0.40	+1.0
1,330,493	+		PGA1_c12850	0.41	-0.3
1,330,635	+		PGA1_c12850	0.50	+0.1
1,330,658	+		PGA1_c12850	0.52	+0.2
1,330,675	-		PGA1_c12850	0.53	-0.2
1,330,703	+		PGA1_c12850	0.55	+0.2
1,330,703	+		PGA1_c12850	0.55	+1.2
1,330,711	-		PGA1_c12850	0.56	+0.2
1,330,711	-		PGA1_c12850	0.56	+0.7
1,330,779	-		PGA1_c12850	0.60	+0.1