Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34870

Experiment: m.b. acetate 140 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. acetate 140 mM
3,658,832	-		PGA1_c34860	0.12	-0.2
3,658,978	+		PGA1_c34860	0.26	-1.6
3,659,006	-		PGA1_c34860	0.29	+1.3
3,659,041	-		PGA1_c34860	0.32	+0.1
3,659,057	-		PGA1_c34860	0.34	-1.9
3,659,070	+		PGA1_c34860	0.35	+1.2
3,659,078	-		PGA1_c34860	0.36	+1.1
3,659,096	+		PGA1_c34860	0.38	+0.6
3,659,154	+		PGA1_c34860	0.44	-1.1
3,659,182	+		PGA1_c34860	0.47	-0.9
3,659,197	-		PGA1_c34860	0.48	-1.0
3,659,202	+		PGA1_c34860	0.49	-1.4
3,659,268	-		PGA1_c34860	0.55	-1.4
3,659,270	+		PGA1_c34860	0.55	-0.4
3,659,278	-		PGA1_c34860	0.56	-1.4
3,659,291	+		PGA1_c34860	0.57	-0.5
3,659,291	+		PGA1_c34860	0.57	+1.3
3,659,299	-		PGA1_c34860	0.58	-1.7
3,659,299	-		PGA1_c34860	0.58	-0.5
3,659,310	+		PGA1_c34860	0.59	-0.8
3,659,325	-		PGA1_c34860	0.61	+0.3
3,659,377	+		PGA1_c34860	0.66	-0.3
3,659,412	+		PGA1_c34860	0.69	-0.5
3,659,432	+		PGA1_c34860	0.71	+0.3
3,659,441	-		PGA1_c34860	0.72	+1.7
3,659,481	-		PGA1_c34860	0.76	+2.6
3,659,482	+		PGA1_c34860	0.76	-0.7
3,659,490	-		PGA1_c34860	0.77	-0.2
3,659,534	-		PGA1_c34860	0.82	+0.8
3,659,616	-		PGA1_c34860	0.90	+0.8
3,659,623	+				-0.7
3,659,631	-				+2.1
3,659,631	-				+0.0
3,659,654	-				+0.3
3,659,686	-				+1.9
3,659,691	-				+0.2
3,659,721	-				-1.1
3,659,721	-				-1.3
3,659,724	+				+0.1
3,659,752	+				-0.8
3,659,756	+				-0.9
3,659,794	-				+0.6
3,659,794	-				+0.7
3,659,799	-				-0.0
3,659,896	+		PGA1_c34870	0.22	-1.5
3,659,899	+		PGA1_c34870	0.23	+1.0
3,659,912	-		PGA1_c34870	0.26	-2.1
3,659,927	+		PGA1_c34870	0.29	-0.3
3,659,941	+		PGA1_c34870	0.32	-0.7
3,659,941	+		PGA1_c34870	0.32	+0.1
3,659,978	-		PGA1_c34870	0.40	-0.7
3,659,985	-		PGA1_c34870	0.42	-3.2
3,660,021	+		PGA1_c34870	0.50	-0.4
3,660,061	+		PGA1_c34870	0.58	-0.1
3,660,076	-		PGA1_c34870	0.62	-1.8
3,660,076	-		PGA1_c34870	0.62	-1.1
3,660,086	-		PGA1_c34870	0.64	+0.6
3,660,086	-		PGA1_c34870	0.64	-1.4
3,660,092	+		PGA1_c34870	0.65	+0.1
3,660,114	+		PGA1_c34870	0.70	+1.0
3,660,114	+		PGA1_c34870	0.70	-0.5
3,660,122	-		PGA1_c34870	0.72	-0.7
3,660,153	+		PGA1_c34870	0.79	-2.5
3,660,153	+		PGA1_c34870	0.79	+0.3
3,660,153	+		PGA1_c34870	0.79	-0.6
3,660,153	+		PGA1_c34870	0.79	-1.4
3,660,153	+		PGA1_c34870	0.79	+0.4
3,660,153	+		PGA1_c34870	0.79	-0.7
3,660,217	+				+0.7
3,660,217	+				+0.9
3,660,237	+				-0.6
3,660,237	+				+1.0
3,660,237	+				-0.2
3,660,242	+				-0.5
3,660,242	+				-0.1
3,660,242	+				-0.7
3,660,242	+				+1.3
3,660,245	-				-2.5
3,660,245	-				-0.3
3,660,245	-				-0.9
3,660,245	-				-0.0
3,660,245	-				+0.6
3,660,245	-				+0.3
3,660,245	-				-0.1
3,660,250	-				-0.4
3,660,250	-				-2.2
3,660,326	-				+1.3
3,660,332	-				-0.3
3,660,347	+				+2.2
3,660,362	+				+1.0
3,660,362	+				-0.4
3,660,370	-				+1.3
3,660,370	-				+0.0
3,660,370	-				+0.4
3,660,370	-				-0.6
3,660,370	-				-0.6
3,660,372	+				+0.9
3,660,380	-				+0.9
3,660,417	+				+1.5
3,660,420	-				+1.0
3,660,420	-				+0.3
3,660,420	-				+1.2
3,660,420	-				+1.1
3,660,492	+		PGA1_c34880	0.15	+1.0
3,660,492	+		PGA1_c34880	0.15	+0.8
3,660,492	+		PGA1_c34880	0.15	+1.9
3,660,492	+		PGA1_c34880	0.15	+1.5
3,660,492	+		PGA1_c34880	0.15	-0.3
3,660,500	-		PGA1_c34880	0.16	+0.4
3,660,500	-		PGA1_c34880	0.16	+1.9
3,660,500	-		PGA1_c34880	0.16	-1.5
3,660,500	-		PGA1_c34880	0.16	+1.4
3,660,500	-		PGA1_c34880	0.16	+0.3
3,660,514	-		PGA1_c34880	0.17	-0.1
3,660,514	-		PGA1_c34880	0.17	+1.3
3,660,521	+		PGA1_c34880	0.17	+1.0
3,660,566	+		PGA1_c34880	0.21	+1.5
3,660,570	+		PGA1_c34880	0.21	+0.4
3,660,582	+		PGA1_c34880	0.22	+0.6
3,660,643	+		PGA1_c34880	0.27	+0.7
3,660,651	-		PGA1_c34880	0.28	+0.5
3,660,651	-		PGA1_c34880	0.28	+0.6
3,660,664	+		PGA1_c34880	0.29	+0.9
3,660,664	+		PGA1_c34880	0.29	-0.1
3,660,674	+		PGA1_c34880	0.29	-2.0
3,660,674	+		PGA1_c34880	0.29	+0.5
3,660,679	+		PGA1_c34880	0.30	+0.9
3,660,682	-		PGA1_c34880	0.30	+0.9
3,660,758	+		PGA1_c34880	0.36	+1.3
3,660,766	-		PGA1_c34880	0.37	+0.7
3,660,785	+		PGA1_c34880	0.38	-0.6
3,660,791	-		PGA1_c34880	0.39	+2.2
3,660,793	-		PGA1_c34880	0.39	+1.3
3,660,802	-		PGA1_c34880	0.39	+0.8
3,660,943	-		PGA1_c34880	0.50	+0.5
3,660,944	+		PGA1_c34880	0.51	+0.2
3,660,959	+		PGA1_c34880	0.52	+0.3
3,660,967	-		PGA1_c34880	0.52	+0.9
3,660,977	+		PGA1_c34880	0.53	+0.7
3,660,985	-		PGA1_c34880	0.54	+0.9
3,660,990	+		PGA1_c34880	0.54	+1.9
3,660,990	+		PGA1_c34880	0.54	+1.3
3,660,998	-		PGA1_c34880	0.55	+0.9
3,660,998	-		PGA1_c34880	0.55	-1.5
3,660,998	-		PGA1_c34880	0.55	+0.5
3,660,998	-		PGA1_c34880	0.55	+1.0
3,661,029	-		PGA1_c34880	0.57	+0.4
3,661,031	-		PGA1_c34880	0.57	+0.8
3,661,101	+		PGA1_c34880	0.63	+0.2
3,661,101	+		PGA1_c34880	0.63	+0.6
3,661,109	-		PGA1_c34880	0.64	+1.2
3,661,109	-		PGA1_c34880	0.64	+1.6
3,661,109	-		PGA1_c34880	0.64	+0.5
3,661,109	-		PGA1_c34880	0.64	+0.5
3,661,111	+		PGA1_c34880	0.64	+0.4
3,661,116	+		PGA1_c34880	0.64	-0.4
3,661,119	-		PGA1_c34880	0.64	-1.2
3,661,149	+		PGA1_c34880	0.67	+0.9
3,661,194	+		PGA1_c34880	0.70	-1.1
3,661,216	-		PGA1_c34880	0.72	+1.2
3,661,232	+		PGA1_c34880	0.73	+1.0
3,661,236	+		PGA1_c34880	0.74	+0.3
3,661,236	+		PGA1_c34880	0.74	+0.4
3,661,236	+		PGA1_c34880	0.74	+2.1
3,661,238	+		PGA1_c34880	0.74	+0.2
3,661,240	-		PGA1_c34880	0.74	+0.9
3,661,244	-		PGA1_c34880	0.74	+1.0
3,661,246	-		PGA1_c34880	0.74	+0.6
3,661,248	+		PGA1_c34880	0.74	-0.2