Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13065 and BWI76_RS13070 are separated by 47 nucleotides BWI76_RS13070 and BWI76_RS13075 are separated by 231 nucleotides BWI76_RS13075 and BWI76_RS13080 are separated by 176 nucleotides
BWI76_RS13065: BWI76_RS13065 - LysR family transcriptional regulator, at 2,725,118 to 2,725,993
_RS13065
BWI76_RS13070: BWI76_RS13070 - hypothetical protein, at 2,726,041 to 2,726,268
_RS13070
BWI76_RS13075: BWI76_RS13075 - cupin, at 2,726,500 to 2,726,832
_RS13075
BWI76_RS13080: BWI76_RS13080 - tyramine oxidase, at 2,727,009 to 2,729,267
_RS13080
Position (kb)
2726
2727 Strain fitness (log2 ratio)
-1
0
1 at 2725.215 kb on - strand, within BWI76_RS13065 at 2725.217 kb on + strand, within BWI76_RS13065 at 2725.261 kb on + strand, within BWI76_RS13065 at 2725.342 kb on + strand, within BWI76_RS13065 at 2725.387 kb on - strand, within BWI76_RS13065 at 2725.668 kb on + strand, within BWI76_RS13065 at 2726.069 kb on - strand, within BWI76_RS13070 at 2726.205 kb on - strand, within BWI76_RS13070 at 2727.014 kb on + strand at 2727.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 2,725,215 - BWI76_RS13065 0.11 -0.3 2,725,217 + BWI76_RS13065 0.11 -0.5 2,725,261 + BWI76_RS13065 0.16 +0.5 2,725,342 + BWI76_RS13065 0.26 +0.2 2,725,387 - BWI76_RS13065 0.31 -0.3 2,725,668 + BWI76_RS13065 0.63 -0.4 2,726,069 - BWI76_RS13070 0.12 +0.5 2,726,205 - BWI76_RS13070 0.72 +0.1 2,727,014 + -0.4 2,727,138 + +0.0
Or see this region's nucleotide sequence