Experiment: 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00380 and AO356_00385 are separated by 96 nucleotides AO356_00385 and AO356_00390 are separated by 224 nucleotides
AO356_00380: AO356_00380 - alpha/beta hydrolase, at 75,377 to 76,246
_00380
AO356_00385: AO356_00385 - peptidylprolyl isomerase, at 76,343 to 76,624
_00385
AO356_00390: AO356_00390 - ABC transporter substrate-binding protein, at 76,849 to 78,717
_00390
Position (kb) 76
77 Strain fitness (log2 ratio) -2
-1
0
1 at 75.902 kb on + strand, within AO356_00380 at 75.902 kb on + strand, within AO356_00380 at 75.902 kb on + strand, within AO356_00380 at 75.903 kb on - strand, within AO356_00380 at 75.966 kb on - strand, within AO356_00380 at 75.968 kb on + strand, within AO356_00380 at 75.969 kb on - strand, within AO356_00380 at 76.205 kb on + strand at 76.206 kb on - strand at 76.206 kb on - strand at 76.206 kb on - strand at 76.317 kb on + strand at 76.318 kb on - strand at 76.556 kb on - strand, within AO356_00385 at 76.676 kb on - strand at 76.809 kb on + strand at 76.838 kb on + strand at 76.946 kb on - strand at 76.946 kb on - strand at 77.071 kb on + strand, within AO356_00390 at 77.071 kb on + strand, within AO356_00390 at 77.072 kb on - strand, within AO356_00390 at 77.116 kb on + strand, within AO356_00390 at 77.116 kb on + strand, within AO356_00390 at 77.152 kb on + strand, within AO356_00390 at 77.152 kb on + strand, within AO356_00390 at 77.152 kb on + strand, within AO356_00390 at 77.153 kb on - strand, within AO356_00390 at 77.153 kb on - strand, within AO356_00390 at 77.153 kb on - strand, within AO356_00390 at 77.153 kb on - strand, within AO356_00390 at 77.153 kb on - strand, within AO356_00390 at 77.153 kb on - strand, within AO356_00390 at 77.154 kb on + strand, within AO356_00390 at 77.161 kb on + strand, within AO356_00390 at 77.162 kb on - strand, within AO356_00390 at 77.218 kb on + strand, within AO356_00390 at 77.218 kb on + strand, within AO356_00390 at 77.219 kb on - strand, within AO356_00390 at 77.219 kb on - strand, within AO356_00390 at 77.279 kb on - strand, within AO356_00390 at 77.373 kb on - strand, within AO356_00390 at 77.606 kb on - strand, within AO356_00390 at 77.606 kb on - strand, within AO356_00390
Per-strain Table
Position Strand Gene LocusTag Fraction 10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 75,902 + AO356_00380 0.60 +1.3 75,902 + AO356_00380 0.60 +0.9 75,902 + AO356_00380 0.60 +0.0 75,903 - AO356_00380 0.60 +0.7 75,966 - AO356_00380 0.68 +0.4 75,968 + AO356_00380 0.68 +0.5 75,969 - AO356_00380 0.68 -0.1 76,205 + +1.7 76,206 - +1.1 76,206 - +0.9 76,206 - +0.2 76,317 + +0.4 76,318 - +0.6 76,556 - AO356_00385 0.76 -0.9 76,676 - -0.2 76,809 + +0.5 76,838 + +1.1 76,946 - -0.5 76,946 - -0.3 77,071 + AO356_00390 0.12 +0.4 77,071 + AO356_00390 0.12 -0.8 77,072 - AO356_00390 0.12 +0.4 77,116 + AO356_00390 0.14 -0.1 77,116 + AO356_00390 0.14 -0.1 77,152 + AO356_00390 0.16 +0.8 77,152 + AO356_00390 0.16 +0.5 77,152 + AO356_00390 0.16 -0.2 77,153 - AO356_00390 0.16 +0.2 77,153 - AO356_00390 0.16 +0.3 77,153 - AO356_00390 0.16 -1.5 77,153 - AO356_00390 0.16 +1.1 77,153 - AO356_00390 0.16 -1.2 77,153 - AO356_00390 0.16 +0.3 77,154 + AO356_00390 0.16 +0.3 77,161 + AO356_00390 0.17 -1.2 77,162 - AO356_00390 0.17 +0.2 77,218 + AO356_00390 0.20 +0.1 77,218 + AO356_00390 0.20 -0.6 77,219 - AO356_00390 0.20 +1.1 77,219 - AO356_00390 0.20 -0.1 77,279 - AO356_00390 0.23 -2.2 77,373 - AO356_00390 0.28 +0.8 77,606 - AO356_00390 0.41 -0.6 77,606 - AO356_00390 0.41 -0.7
Or see this region's nucleotide sequence