Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19780 and RR42_RS19785 are separated by 44 nucleotides RR42_RS19785 and RR42_RS19790 are separated by 425 nucleotides
RR42_RS19780: RR42_RS19780 - peptidase M20, at 4,268,150 to 4,269,418
_RS19780
RR42_RS19785: RR42_RS19785 - allantoate amidohydrolase, at 4,269,463 to 4,270,728
_RS19785
RR42_RS19790: RR42_RS19790 - C4-dicarboxylate ABC transporter, at 4,271,154 to 4,272,575
_RS19790
Position (kb) 4269
4270
4271 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4268.683 kb on - strand, within RR42_RS19780 at 4268.683 kb on - strand, within RR42_RS19780 at 4268.814 kb on + strand, within RR42_RS19780 at 4268.815 kb on - strand, within RR42_RS19780 at 4268.815 kb on - strand, within RR42_RS19780 at 4268.838 kb on + strand, within RR42_RS19780 at 4268.838 kb on + strand, within RR42_RS19780 at 4268.839 kb on - strand, within RR42_RS19780 at 4268.907 kb on + strand, within RR42_RS19780 at 4268.907 kb on + strand, within RR42_RS19780 at 4268.908 kb on - strand, within RR42_RS19780 at 4268.982 kb on + strand, within RR42_RS19780 at 4268.983 kb on - strand, within RR42_RS19780 at 4268.983 kb on - strand, within RR42_RS19780 at 4268.988 kb on + strand, within RR42_RS19780 at 4268.988 kb on + strand, within RR42_RS19780 at 4268.989 kb on - strand, within RR42_RS19780 at 4269.030 kb on + strand, within RR42_RS19780 at 4269.030 kb on + strand, within RR42_RS19780 at 4269.030 kb on + strand, within RR42_RS19780 at 4269.030 kb on + strand, within RR42_RS19780 at 4269.031 kb on - strand, within RR42_RS19780 at 4269.031 kb on - strand, within RR42_RS19780 at 4269.031 kb on - strand, within RR42_RS19780 at 4269.369 kb on + strand at 4269.369 kb on + strand at 4269.370 kb on - strand at 4269.464 kb on + strand at 4269.903 kb on + strand, within RR42_RS19785 at 4269.904 kb on - strand, within RR42_RS19785 at 4270.062 kb on + strand, within RR42_RS19785 at 4270.063 kb on - strand, within RR42_RS19785 at 4270.442 kb on + strand, within RR42_RS19785 at 4270.442 kb on + strand, within RR42_RS19785 at 4270.517 kb on + strand, within RR42_RS19785 at 4270.622 kb on + strand at 4270.622 kb on + strand at 4270.622 kb on + strand at 4270.622 kb on + strand at 4270.622 kb on + strand at 4270.861 kb on + strand at 4270.861 kb on + strand at 4270.880 kb on + strand at 4270.880 kb on + strand at 4270.880 kb on + strand at 4270.881 kb on - strand at 4270.881 kb on - strand at 4271.333 kb on + strand, within RR42_RS19790 at 4271.333 kb on + strand, within RR42_RS19790 at 4271.334 kb on - strand, within RR42_RS19790 at 4271.334 kb on - strand, within RR42_RS19790 at 4271.448 kb on + strand, within RR42_RS19790
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 4,268,683 - RR42_RS19780 0.42 +0.1 4,268,683 - RR42_RS19780 0.42 -0.4 4,268,814 + RR42_RS19780 0.52 +0.9 4,268,815 - RR42_RS19780 0.52 +1.3 4,268,815 - RR42_RS19780 0.52 -0.8 4,268,838 + RR42_RS19780 0.54 +0.1 4,268,838 + RR42_RS19780 0.54 +1.6 4,268,839 - RR42_RS19780 0.54 +0.2 4,268,907 + RR42_RS19780 0.60 -1.7 4,268,907 + RR42_RS19780 0.60 +0.8 4,268,908 - RR42_RS19780 0.60 -2.7 4,268,982 + RR42_RS19780 0.66 +0.7 4,268,983 - RR42_RS19780 0.66 +0.1 4,268,983 - RR42_RS19780 0.66 +1.4 4,268,988 + RR42_RS19780 0.66 +1.7 4,268,988 + RR42_RS19780 0.66 -0.1 4,268,989 - RR42_RS19780 0.66 +1.0 4,269,030 + RR42_RS19780 0.69 -0.4 4,269,030 + RR42_RS19780 0.69 +0.6 4,269,030 + RR42_RS19780 0.69 +0.7 4,269,030 + RR42_RS19780 0.69 -0.6 4,269,031 - RR42_RS19780 0.69 -0.3 4,269,031 - RR42_RS19780 0.69 +0.8 4,269,031 - RR42_RS19780 0.69 +0.5 4,269,369 + +2.3 4,269,369 + +0.3 4,269,370 - -0.4 4,269,464 + -1.0 4,269,903 + RR42_RS19785 0.35 -0.4 4,269,904 - RR42_RS19785 0.35 +0.1 4,270,062 + RR42_RS19785 0.47 -0.6 4,270,063 - RR42_RS19785 0.47 -2.1 4,270,442 + RR42_RS19785 0.77 -0.5 4,270,442 + RR42_RS19785 0.77 +0.2 4,270,517 + RR42_RS19785 0.83 -1.8 4,270,622 + +0.6 4,270,622 + -0.1 4,270,622 + -1.7 4,270,622 + -0.4 4,270,622 + +0.2 4,270,861 + -0.3 4,270,861 + +0.6 4,270,880 + -0.8 4,270,880 + -0.7 4,270,880 + -2.1 4,270,881 - +0.4 4,270,881 - +0.4 4,271,333 + RR42_RS19790 0.13 -1.0 4,271,333 + RR42_RS19790 0.13 +0.1 4,271,334 - RR42_RS19790 0.13 -2.7 4,271,334 - RR42_RS19790 0.13 +0.2 4,271,448 + RR42_RS19790 0.21 -0.4
Or see this region's nucleotide sequence