Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12860

Experiment: Uridine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine (N)
1,330,426	-		PGA1_c12850	0.36	-0.1
1,330,429	-		PGA1_c12850	0.36	-2.5
1,330,476	+		PGA1_c12850	0.39	-3.0
1,330,481	+		PGA1_c12850	0.40	-0.7
1,330,481	+		PGA1_c12850	0.40	-1.2
1,330,493	+		PGA1_c12850	0.41	-2.8
1,330,635	+		PGA1_c12850	0.50	-2.9
1,330,658	+		PGA1_c12850	0.52	-3.0
1,330,675	-		PGA1_c12850	0.53	-2.4
1,330,703	+		PGA1_c12850	0.55	-3.8
1,330,703	+		PGA1_c12850	0.55	-3.5
1,330,711	-		PGA1_c12850	0.56	-1.3
1,330,711	-		PGA1_c12850	0.56	-0.5
1,330,779	-		PGA1_c12850	0.60	-3.6
1,330,784	+		PGA1_c12850	0.61	-1.9
1,330,792	+		PGA1_c12850	0.61	-1.5
1,330,792	+		PGA1_c12850	0.61	-2.8
1,330,792	+		PGA1_c12850	0.61	-2.3
1,330,792	+		PGA1_c12850	0.61	-2.2
1,330,795	-		PGA1_c12850	0.61	-2.4
1,330,800	-		PGA1_c12850	0.62	-1.6
1,330,800	-		PGA1_c12850	0.62	-1.7
1,330,868	+		PGA1_c12850	0.66	-3.2
1,330,884	-		PGA1_c12850	0.67	-3.3
1,330,945	-		PGA1_c12850	0.72	-2.6
1,330,945	-		PGA1_c12850	0.72	-3.2
1,330,952	+		PGA1_c12850	0.72	-1.7
1,331,039	-		PGA1_c12850	0.78	-2.4
1,331,046	+		PGA1_c12850	0.79	-1.2
1,331,046	+		PGA1_c12850	0.79	-2.3
1,331,046	+		PGA1_c12850	0.79	-0.9
1,331,054	-		PGA1_c12850	0.79	-2.2
1,331,054	-		PGA1_c12850	0.79	-0.9
1,331,054	-		PGA1_c12850	0.79	-1.7
1,331,059	-		PGA1_c12850	0.79	-3.4
1,331,093	+		PGA1_c12850	0.82	-2.0
1,331,159	+		PGA1_c12850	0.86	-1.2
1,331,159	+		PGA1_c12850	0.86	-1.3
1,331,159	+		PGA1_c12850	0.86	-2.7
1,331,159	+		PGA1_c12850	0.86	-2.2
1,331,159	+		PGA1_c12850	0.86	-1.3
1,331,166	+		PGA1_c12850	0.87	-1.9
1,331,167	-		PGA1_c12850	0.87	-1.3
1,331,167	-		PGA1_c12850	0.87	-2.2
1,331,167	-		PGA1_c12850	0.87	-4.0
1,331,167	-		PGA1_c12850	0.87	-1.2
1,331,167	-		PGA1_c12850	0.87	-4.3
1,331,167	-		PGA1_c12850	0.87	-3.4
1,331,167	-		PGA1_c12850	0.87	-3.9
1,331,174	-		PGA1_c12850	0.87	-2.6
1,331,174	-		PGA1_c12850	0.87	-2.4
1,331,174	-		PGA1_c12850	0.87	-1.3
1,331,176	+		PGA1_c12850	0.87	-0.4
1,331,176	+		PGA1_c12850	0.87	-2.3
1,331,176	+		PGA1_c12850	0.87	-1.2
1,331,176	+		PGA1_c12850	0.87	-3.2
1,331,179	-		PGA1_c12850	0.88	-2.2
1,331,184	-		PGA1_c12850	0.88	-3.1
1,331,184	-		PGA1_c12850	0.88	-2.0
1,331,184	-		PGA1_c12850	0.88	-1.4
1,331,262	+				-2.6
1,331,270	-				-1.9
1,331,270	-				-0.7
1,331,360	-				-0.5
1,331,514	-		PGA1_c12860	0.11	-0.9
1,331,544	-		PGA1_c12860	0.15	-0.6
1,331,547	+		PGA1_c12860	0.15	+0.1
1,331,555	+		PGA1_c12860	0.16	+0.2
1,331,564	-		PGA1_c12860	0.17	-0.1
1,331,606	+		PGA1_c12860	0.22	-0.7
1,331,732	+		PGA1_c12860	0.37	+0.8
1,331,740	+		PGA1_c12860	0.38	+0.0
1,331,785	-		PGA1_c12860	0.44	-0.3
1,331,815	-		PGA1_c12860	0.47	+0.2
1,331,884	+		PGA1_c12860	0.55	-1.8
1,331,894	+		PGA1_c12860	0.57	-2.3
1,331,902	-		PGA1_c12860	0.58	+0.1
1,331,915	+		PGA1_c12860	0.59	-0.4
1,331,920	+		PGA1_c12860	0.60	-2.1
1,331,923	-		PGA1_c12860	0.60	-0.5
1,331,979	-		PGA1_c12860	0.67	+0.8
1,331,979	-		PGA1_c12860	0.67	-1.2
1,331,984	+		PGA1_c12860	0.67	+0.8
1,332,013	-		PGA1_c12860	0.71	+0.9
1,332,042	+		PGA1_c12860	0.74	-0.1
1,332,133	+		PGA1_c12860	0.85	-2.4
1,332,141	+		PGA1_c12860	0.86	+0.3
1,332,229	+				+0.5
1,332,237	-				-1.7
1,332,240	+				-0.1
1,332,246	+				-0.6
1,332,248	-				-0.0
1,332,254	+				+0.7
1,332,264	-				-1.3
1,332,274	-				-0.3
1,332,308	+				+0.8
1,332,362	+				+0.4
1,332,370	-				+0.2
1,332,370	-				-0.6
1,332,381	+				-0.9
1,332,381	+				+0.6
1,332,381	+				-0.1
1,332,381	+				+0.3
1,332,389	-				-1.4
1,332,389	-				-0.2
1,332,405	+				+0.1
1,332,440	+				+0.2
1,332,448	-				-0.1
1,332,448	-				+0.3
1,332,523	+		PGA1_c12870	0.17	+0.1
1,332,532	-		PGA1_c12870	0.18	-0.2
1,332,576	-		PGA1_c12870	0.23	-0.4
1,332,576	-		PGA1_c12870	0.23	-0.8
1,332,620	-		PGA1_c12870	0.28	-0.1
1,332,649	+		PGA1_c12870	0.31	+1.5
1,332,649	+		PGA1_c12870	0.31	+0.7
1,332,649	+		PGA1_c12870	0.31	-1.2
1,332,649	+		PGA1_c12870	0.31	-0.0
1,332,665	+		PGA1_c12870	0.33	-0.3
1,332,670	+		PGA1_c12870	0.33	+0.1
1,332,678	-		PGA1_c12870	0.34	+0.4
1,332,699	+		PGA1_c12870	0.37	-0.2
1,332,723	+		PGA1_c12870	0.39	-1.0
1,332,731	-		PGA1_c12870	0.40	-1.9
1,332,731	-		PGA1_c12870	0.40	-2.0
1,332,753	+		PGA1_c12870	0.42	-1.3
1,332,761	-		PGA1_c12870	0.43	+0.0
1,332,793	-		PGA1_c12870	0.47	+0.3
1,332,854	+		PGA1_c12870	0.53	+1.3
1,332,864	+		PGA1_c12870	0.55	-1.5
1,332,864	-		PGA1_c12870	0.55	-0.2
1,332,929	-		PGA1_c12870	0.62	-0.6
1,332,932	+		PGA1_c12870	0.62	+0.5
1,332,932	+		PGA1_c12870	0.62	-1.4
1,332,932	+		PGA1_c12870	0.62	-0.5
1,332,940	-		PGA1_c12870	0.63	-1.0
1,332,940	-		PGA1_c12870	0.63	+0.1
1,332,940	-		PGA1_c12870	0.63	+0.4
1,332,940	-		PGA1_c12870	0.63	+0.3
1,332,940	-		PGA1_c12870	0.63	-1.0
1,332,940	-		PGA1_c12870	0.63	+0.4
1,332,944	+		PGA1_c12870	0.63	-0.9
1,332,944	+		PGA1_c12870	0.63	-0.7
1,332,944	+		PGA1_c12870	0.63	+0.5
1,332,944	+		PGA1_c12870	0.63	-0.6
1,332,944	+		PGA1_c12870	0.63	-0.3
1,332,947	-		PGA1_c12870	0.64	-0.3
1,332,949	+		PGA1_c12870	0.64	-1.0
1,332,949	+		PGA1_c12870	0.64	+0.6
1,332,949	+		PGA1_c12870	0.64	-1.0
1,332,949	+		PGA1_c12870	0.64	-0.2
1,332,952	-		PGA1_c12870	0.64	-0.3
1,332,952	-		PGA1_c12870	0.64	-0.2
1,332,957	-		PGA1_c12870	0.65	+0.5
1,332,957	-		PGA1_c12870	0.65	-0.2
1,332,957	-		PGA1_c12870	0.65	-0.2
1,332,957	-		PGA1_c12870	0.65	-0.1
1,332,962	-		PGA1_c12870	0.65	-0.3
1,332,998	+		PGA1_c12870	0.69	-0.3
1,333,007	-		PGA1_c12870	0.70	+0.4
1,333,007	-		PGA1_c12870	0.70	-0.9
1,333,044	+		PGA1_c12870	0.74	-1.0
1,333,086	-		PGA1_c12870	0.79	+0.3
1,333,101	-		PGA1_c12870	0.80	+1.1
1,333,101	-		PGA1_c12870	0.80	-0.1
1,333,111	-		PGA1_c12870	0.81	-2.2
1,333,156	+		PGA1_c12870	0.86	+0.2
1,333,164	-		PGA1_c12870	0.87	-0.5
1,333,164	-		PGA1_c12870	0.87	+0.0
1,333,164	-		PGA1_c12870	0.87	-0.1
1,333,164	-		PGA1_c12870	0.87	+0.1
1,333,170	+		PGA1_c12870	0.88	-2.4
1,333,175	+		PGA1_c12870	0.88	-1.2
1,333,175	+		PGA1_c12870	0.88	+0.2
1,333,175	+		PGA1_c12870	0.88	-1.1
1,333,175	+		PGA1_c12870	0.88	-0.3
1,333,175	+		PGA1_c12870	0.88	-0.3
1,333,175	+		PGA1_c12870	0.88	+0.2
1,333,175	+		PGA1_c12870	0.88	+0.6
1,333,175	+		PGA1_c12870	0.88	-0.2
1,333,175	+		PGA1_c12870	0.88	-0.0
1,333,175	+		PGA1_c12870	0.88	-0.7
1,333,180	+		PGA1_c12870	0.89	+0.3
1,333,180	+		PGA1_c12870	0.89	+0.5
1,333,183	-		PGA1_c12870	0.89	-1.3
1,333,183	-		PGA1_c12870	0.89	-0.7
1,333,183	-		PGA1_c12870	0.89	-1.2
1,333,183	-		PGA1_c12870	0.89	+1.6
1,333,188	-		PGA1_c12870	0.90	+0.4
1,333,188	-		PGA1_c12870	0.90	+0.7
1,333,232	+				-0.7