Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16905
Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Deoxyribonucleic from herring sperm 5 mg/mL |
---|---|---|---|---|---|
remove | |||||
3,657,512 | + | RR42_RS16900 | 0.32 | +0.7 | |
3,657,530 | - | RR42_RS16900 | 0.33 | +1.3 | |
3,657,966 | - | RR42_RS16900 | 0.64 | -0.8 | |
3,658,049 | + | RR42_RS16900 | 0.70 | -0.1 | |
3,658,079 | + | RR42_RS16900 | 0.72 | +1.2 | |
3,658,080 | - | RR42_RS16900 | 0.72 | +0.3 | |
3,658,080 | - | RR42_RS16900 | 0.72 | +1.1 | |
3,658,080 | - | RR42_RS16900 | 0.72 | -3.1 | |
3,658,127 | + | RR42_RS16900 | 0.76 | -1.0 | |
3,658,128 | - | RR42_RS16900 | 0.76 | +0.0 | |
3,658,128 | - | RR42_RS16900 | 0.76 | -0.8 | |
3,658,128 | - | RR42_RS16900 | 0.76 | +0.5 | |
3,658,155 | + | RR42_RS16900 | 0.78 | -1.3 | |
3,658,184 | + | RR42_RS16900 | 0.80 | +0.7 | |
3,658,405 | + | +0.2 | |||
3,658,406 | - | +1.5 | |||
3,658,501 | + | -0.8 | |||
3,658,715 | + | RR42_RS16905 | 0.20 | -3.1 | |
3,658,841 | - | RR42_RS16905 | 0.30 | -1.3 | |
3,658,841 | - | RR42_RS16905 | 0.30 | -0.3 | |
3,658,844 | - | RR42_RS16905 | 0.30 | -2.6 | |
3,659,146 | + | RR42_RS16905 | 0.54 | +0.4 | |
3,659,204 | + | RR42_RS16905 | 0.59 | -0.3 | |
3,659,727 | - | -0.1 | |||
3,660,106 | + | RR42_RS16910 | 0.58 | +0.4 | |
3,660,364 | + | -3.1 | |||
3,660,365 | - | +0.8 |
Or see this region's nucleotide sequence