Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01240 and RR42_RS01245 are separated by 52 nucleotides RR42_RS01245 and RR42_RS01250 are separated by 48 nucleotides RR42_RS01250 and RR42_RS01255 are separated by 100 nucleotides RR42_RS01255 and RR42_RS01260 overlap by 4 nucleotides
RR42_RS01240: RR42_RS01240 - membrane protein, at 280,383 to 281,735
_RS01240
RR42_RS01245: RR42_RS01245 - polyphosphate kinase, at 281,788 to 282,597
_RS01245
RR42_RS01250: RR42_RS01250 - diaminopimelate epimerase, at 282,646 to 283,512
_RS01250
RR42_RS01255: RR42_RS01255 - lauroyl acyltransferase, at 283,613 to 284,506
_RS01255
RR42_RS01260: RR42_RS01260 - lauroyl acyltransferase, at 284,503 to 285,441
_RS01260
Position (kb) 282
283
284 Strain fitness (log2 ratio) -1
0
1
2 at 281.832 kb on - strand at 281.918 kb on + strand, within RR42_RS01245 at 281.918 kb on + strand, within RR42_RS01245 at 281.918 kb on + strand, within RR42_RS01245 at 281.919 kb on - strand, within RR42_RS01245 at 281.919 kb on - strand, within RR42_RS01245 at 281.961 kb on + strand, within RR42_RS01245 at 281.964 kb on - strand, within RR42_RS01245 at 281.964 kb on - strand, within RR42_RS01245 at 282.145 kb on + strand, within RR42_RS01245 at 282.156 kb on - strand, within RR42_RS01245 at 282.284 kb on + strand, within RR42_RS01245 at 282.440 kb on + strand, within RR42_RS01245 at 282.440 kb on + strand, within RR42_RS01245 at 282.642 kb on - strand at 283.523 kb on + strand at 283.523 kb on + strand at 283.617 kb on + strand at 283.617 kb on + strand at 283.669 kb on - strand at 283.672 kb on - strand at 283.785 kb on + strand, within RR42_RS01255 at 283.785 kb on + strand, within RR42_RS01255 at 283.795 kb on - strand, within RR42_RS01255 at 283.795 kb on - strand, within RR42_RS01255 at 283.816 kb on - strand, within RR42_RS01255 at 283.902 kb on + strand, within RR42_RS01255 at 284.075 kb on - strand, within RR42_RS01255 at 284.076 kb on + strand, within RR42_RS01255 at 284.076 kb on + strand, within RR42_RS01255 at 284.077 kb on - strand, within RR42_RS01255 at 284.400 kb on + strand, within RR42_RS01255 at 284.400 kb on + strand, within RR42_RS01255
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 281,832 - -0.1 281,918 + RR42_RS01245 0.16 -0.8 281,918 + RR42_RS01245 0.16 -1.2 281,918 + RR42_RS01245 0.16 +0.6 281,919 - RR42_RS01245 0.16 +0.1 281,919 - RR42_RS01245 0.16 -0.0 281,961 + RR42_RS01245 0.21 -0.1 281,964 - RR42_RS01245 0.22 -0.2 281,964 - RR42_RS01245 0.22 -0.8 282,145 + RR42_RS01245 0.44 +1.6 282,156 - RR42_RS01245 0.45 +0.6 282,284 + RR42_RS01245 0.61 +0.3 282,440 + RR42_RS01245 0.80 -1.2 282,440 + RR42_RS01245 0.80 +0.8 282,642 - +0.9 283,523 + -0.2 283,523 + +0.3 283,617 + +0.6 283,617 + -0.1 283,669 - +1.0 283,672 - +0.8 283,785 + RR42_RS01255 0.19 +2.0 283,785 + RR42_RS01255 0.19 +0.1 283,795 - RR42_RS01255 0.20 +0.6 283,795 - RR42_RS01255 0.20 +1.9 283,816 - RR42_RS01255 0.23 +0.7 283,902 + RR42_RS01255 0.32 +1.0 284,075 - RR42_RS01255 0.52 +1.0 284,076 + RR42_RS01255 0.52 +1.8 284,076 + RR42_RS01255 0.52 +1.9 284,077 - RR42_RS01255 0.52 +1.7 284,400 + RR42_RS01255 0.88 +1.5 284,400 + RR42_RS01255 0.88 +1.2
Or see this region's nucleotide sequence