Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00073

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00071 and CCNA_00072 are separated by 43 nucleotidesCCNA_00072 and CCNA_00073 overlap by 4 nucleotidesCCNA_00073 and CCNA_R0001 are separated by 41 nucleotidesCCNA_R0001 and CCNA_00074 are separated by 251 nucleotides CCNA_00071: CCNA_00071 - uroporphyrinogen-III synthase, at 72,950 to 73,636 _00071 CCNA_00072: CCNA_00072 - hypothetical protein, at 73,680 to 74,576 _00072 CCNA_00073: CCNA_00073 - HemY domain membrane protein, at 74,573 to 76,108 _00073 CCNA_R0001: CCNA_R0001 - tRNA-Thr, at 76,150 to 76,225 _R0001 CCNA_00074: CCNA_00074 - multifunctional fatty acid oxidation complex subunit alpha FadJ, at 76,477 to 78,678 _00074 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 73.615 kb on + strandat 73.623 kb on - strandat 73.632 kb on - strandat 73.650 kb on - strandat 73.650 kb on - strandat 73.667 kb on - strandat 73.723 kb on + strandat 73.731 kb on + strandat 73.739 kb on - strandat 73.776 kb on + strand, within CCNA_00072at 73.786 kb on + strand, within CCNA_00072at 73.800 kb on + strand, within CCNA_00072at 73.822 kb on + strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.830 kb on - strand, within CCNA_00072at 73.831 kb on - strand, within CCNA_00072at 73.890 kb on - strand, within CCNA_00072at 73.946 kb on + strand, within CCNA_00072at 73.967 kb on - strand, within CCNA_00072at 73.973 kb on + strand, within CCNA_00072at 73.973 kb on + strand, within CCNA_00072at 73.981 kb on - strand, within CCNA_00072at 73.981 kb on - strand, within CCNA_00072at 74.008 kb on + strand, within CCNA_00072at 74.010 kb on + strand, within CCNA_00072at 74.027 kb on + strand, within CCNA_00072at 74.036 kb on - strand, within CCNA_00072at 74.067 kb on + strand, within CCNA_00072at 74.072 kb on + strand, within CCNA_00072at 74.080 kb on - strandat 74.097 kb on - strand, within CCNA_00072at 74.120 kb on - strand, within CCNA_00072at 74.125 kb on + strand, within CCNA_00072at 74.127 kb on - strand, within CCNA_00072at 74.135 kb on + strand, within CCNA_00072at 74.143 kb on + strand, within CCNA_00072at 74.166 kb on - strand, within CCNA_00072at 74.207 kb on - strand, within CCNA_00072at 74.262 kb on - strand, within CCNA_00072at 74.290 kb on + strand, within CCNA_00072at 74.295 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.300 kb on + strand, within CCNA_00072at 74.308 kb on - strand, within CCNA_00072at 74.317 kb on - strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.369 kb on + strand, within CCNA_00072at 74.379 kb on + strand, within CCNA_00072at 74.511 kb on - strandat 74.533 kb on + strandat 74.536 kb on - strandat 74.596 kb on + strandat 74.630 kb on + strandat 74.632 kb on - strandat 74.638 kb on - strandat 74.719 kb on + strandat 74.719 kb on + strandat 74.719 kb on + strandat 74.733 kb on + strand, within CCNA_00073at 74.734 kb on - strand, within CCNA_00073at 74.734 kb on - strand, within CCNA_00073at 74.743 kb on + strand, within CCNA_00073at 74.743 kb on + strand, within CCNA_00073at 74.751 kb on - strand, within CCNA_00073at 74.751 kb on - strand, within CCNA_00073at 74.754 kb on + strand, within CCNA_00073at 74.754 kb on + strand, within CCNA_00073at 74.762 kb on - strand, within CCNA_00073at 74.774 kb on + strand, within CCNA_00073at 74.782 kb on - strand, within CCNA_00073at 74.782 kb on - strand, within CCNA_00073at 74.789 kb on + strand, within CCNA_00073at 74.789 kb on + strand, within CCNA_00073at 74.794 kb on + strand, within CCNA_00073at 74.797 kb on - strand, within CCNA_00073at 74.808 kb on - strand, within CCNA_00073at 74.808 kb on - strand, within CCNA_00073at 74.811 kb on + strand, within CCNA_00073at 74.821 kb on + strand, within CCNA_00073at 74.833 kb on - strand, within CCNA_00073at 74.853 kb on - strand, within CCNA_00073at 74.891 kb on + strand, within CCNA_00073at 74.927 kb on + strand, within CCNA_00073at 74.927 kb on + strand, within CCNA_00073at 74.946 kb on - strand, within CCNA_00073at 74.984 kb on + strand, within CCNA_00073at 74.984 kb on + strand, within CCNA_00073at 75.034 kb on - strand, within CCNA_00073at 75.045 kb on + strand, within CCNA_00073at 75.053 kb on - strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.064 kb on + strand, within CCNA_00073at 75.072 kb on - strand, within CCNA_00073at 75.108 kb on + strand, within CCNA_00073at 75.149 kb on + strand, within CCNA_00073at 75.151 kb on + strand, within CCNA_00073at 75.151 kb on + strand, within CCNA_00073at 75.159 kb on - strand, within CCNA_00073at 75.188 kb on + strand, within CCNA_00073at 75.210 kb on + strand, within CCNA_00073at 75.210 kb on + strand, within CCNA_00073at 75.213 kb on - strand, within CCNA_00073at 75.225 kb on - strand, within CCNA_00073at 75.304 kb on + strand, within CCNA_00073at 75.304 kb on + strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.312 kb on - strand, within CCNA_00073at 75.336 kb on - strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.352 kb on + strand, within CCNA_00073at 75.360 kb on - strand, within CCNA_00073at 75.375 kb on + strand, within CCNA_00073at 75.375 kb on + strand, within CCNA_00073at 75.379 kb on + strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.444 kb on - strand, within CCNA_00073at 75.444 kb on - strand, within CCNA_00073at 75.481 kb on + strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.537 kb on - strand, within CCNA_00073at 75.611 kb on + strand, within CCNA_00073at 75.655 kb on + strand, within CCNA_00073at 75.659 kb on + strand, within CCNA_00073at 75.716 kb on + strand, within CCNA_00073at 75.724 kb on - strand, within CCNA_00073at 75.727 kb on + strand, within CCNA_00073at 75.727 kb on + strand, within CCNA_00073at 75.752 kb on - strand, within CCNA_00073at 75.769 kb on - strand, within CCNA_00073at 75.776 kb on + strand, within CCNA_00073at 75.776 kb on + strand, within CCNA_00073at 75.784 kb on + strand, within CCNA_00073at 75.791 kb on + strand, within CCNA_00073at 75.916 kb on + strand, within CCNA_00073at 75.924 kb on - strand, within CCNA_00073at 75.930 kb on - strand, within CCNA_00073at 75.941 kb on + strand, within CCNA_00073at 75.941 kb on + strand, within CCNA_00073at 75.949 kb on - strand, within CCNA_00073at 75.993 kb on + strandat 76.001 kb on - strandat 76.052 kb on + strandat 76.277 kb on + strandat 76.286 kb on - strandat 76.286 kb on - strandat 76.312 kb on + strandat 76.345 kb on + strandat 76.371 kb on - strandat 76.389 kb on + strandat 76.392 kb on - strandat 76.457 kb on + strandat 76.457 kb on + strandat 76.457 kb on + strandat 76.462 kb on + strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.465 kb on - strandat 76.470 kb on - strandat 76.487 kb on + strandat 76.487 kb on + strandat 76.495 kb on - strandat 76.495 kb on - strandat 76.495 kb on - strandat 76.495 kb on - strandat 76.499 kb on + strandat 76.536 kb on - strandat 76.546 kb on - strandat 76.570 kb on - strandat 76.582 kb on - strandat 76.655 kb on + strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.690 kb on + strandat 76.697 kb on + strandat 76.722 kb on - strand, within CCNA_00074at 76.725 kb on + strand, within CCNA_00074at 76.725 kb on + strand, within CCNA_00074at 76.733 kb on - strand, within CCNA_00074at 76.733 kb on - strand, within CCNA_00074at 76.799 kb on - strand, within CCNA_00074at 76.835 kb on - strand, within CCNA_00074at 76.885 kb on - strand, within CCNA_00074at 76.891 kb on - strand, within CCNA_00074at 76.963 kb on - strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strandat 77.011 kb on + strand, within CCNA_00074at 77.018 kb on - strand, within CCNA_00074at 77.019 kb on - strand, within CCNA_00074at 77.019 kb on - strand, within CCNA_00074at 77.019 kb on - strand, within CCNA_00074

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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73,615 + -1.1
73,623 - +0.5
73,632 - -0.5
73,650 - -0.6
73,650 - +0.3
73,667 - -0.6
73,723 + -0.4
73,731 + +0.0
73,739 - -0.8
73,776 + CCNA_00072 0.11 -0.7
73,786 + CCNA_00072 0.12 +0.1
73,800 + CCNA_00072 0.13 -0.2
73,822 + CCNA_00072 0.16 -0.4
73,830 - CCNA_00072 0.17 -0.5
73,830 - CCNA_00072 0.17 -0.4
73,830 - CCNA_00072 0.17 -0.1
73,830 - CCNA_00072 0.17 -1.1
73,831 - CCNA_00072 0.17 -0.8
73,890 - CCNA_00072 0.23 -0.3
73,946 + CCNA_00072 0.30 -0.6
73,967 - CCNA_00072 0.32 -0.1
73,973 + CCNA_00072 0.33 -0.2
73,973 + CCNA_00072 0.33 -0.4
73,981 - CCNA_00072 0.34 -0.1
73,981 - CCNA_00072 0.34 +1.0
74,008 + CCNA_00072 0.37 -0.1
74,010 + CCNA_00072 0.37 -0.7
74,027 + CCNA_00072 0.39 -0.5
74,036 - CCNA_00072 0.40 -0.1
74,067 + CCNA_00072 0.43 -0.2
74,072 + CCNA_00072 0.44 +0.0
74,080 - +0.7
74,097 - CCNA_00072 0.46 -0.4
74,120 - CCNA_00072 0.49 -0.6
74,125 + CCNA_00072 0.50 -0.2
74,127 - CCNA_00072 0.50 -0.3
74,135 + CCNA_00072 0.51 +0.1
74,143 + CCNA_00072 0.52 +0.4
74,166 - CCNA_00072 0.54 -0.9
74,207 - CCNA_00072 0.59 -0.6
74,262 - CCNA_00072 0.65 -0.7
74,290 + CCNA_00072 0.68 +0.6
74,295 + CCNA_00072 0.69 +0.1
74,300 + CCNA_00072 0.69 -0.7
74,300 + CCNA_00072 0.69 +1.1
74,300 + CCNA_00072 0.69 +0.0
74,300 + CCNA_00072 0.69 -0.4
74,308 - CCNA_00072 0.70 -0.8
74,317 - CCNA_00072 0.71 +0.4
74,369 + CCNA_00072 0.77 +0.2
74,369 + CCNA_00072 0.77 +0.2
74,369 + CCNA_00072 0.77 -0.4
74,379 + CCNA_00072 0.78 -0.2
74,511 - -0.2
74,533 + +0.1
74,536 - +0.8
74,596 + +0.3
74,630 + -0.1
74,632 - -1.2
74,638 - -0.0
74,719 + -0.7
74,719 + +0.4
74,719 + +0.1
74,733 + CCNA_00073 0.10 -0.3
74,734 - CCNA_00073 0.10 -0.6
74,734 - CCNA_00073 0.10 +1.9
74,743 + CCNA_00073 0.11 -0.6
74,743 + CCNA_00073 0.11 -0.0
74,751 - CCNA_00073 0.12 +0.0
74,751 - CCNA_00073 0.12 +1.0
74,754 + CCNA_00073 0.12 -0.2
74,754 + CCNA_00073 0.12 -0.0
74,762 - CCNA_00073 0.12 -0.1
74,774 + CCNA_00073 0.13 +0.2
74,782 - CCNA_00073 0.14 -0.7
74,782 - CCNA_00073 0.14 +1.1
74,789 + CCNA_00073 0.14 -0.0
74,789 + CCNA_00073 0.14 +0.1
74,794 + CCNA_00073 0.14 +0.1
74,797 - CCNA_00073 0.15 -0.4
74,808 - CCNA_00073 0.15 -0.5
74,808 - CCNA_00073 0.15 -0.3
74,811 + CCNA_00073 0.15 -0.5
74,821 + CCNA_00073 0.16 -0.3
74,833 - CCNA_00073 0.17 -0.6
74,853 - CCNA_00073 0.18 +0.2
74,891 + CCNA_00073 0.21 -0.2
74,927 + CCNA_00073 0.23 +0.3
74,927 + CCNA_00073 0.23 -0.3
74,946 - CCNA_00073 0.24 +0.0
74,984 + CCNA_00073 0.27 -0.5
74,984 + CCNA_00073 0.27 +0.3
75,034 - CCNA_00073 0.30 -0.2
75,045 + CCNA_00073 0.31 +0.0
75,053 - CCNA_00073 0.31 -0.4
75,064 + CCNA_00073 0.32 +0.1
75,064 + CCNA_00073 0.32 +0.2
75,064 + CCNA_00073 0.32 -0.0
75,072 - CCNA_00073 0.32 +0.1
75,108 + CCNA_00073 0.35 -0.2
75,149 + CCNA_00073 0.38 -0.2
75,151 + CCNA_00073 0.38 -0.1
75,151 + CCNA_00073 0.38 -0.2
75,159 - CCNA_00073 0.38 -0.3
75,188 + CCNA_00073 0.40 -0.8
75,210 + CCNA_00073 0.41 -0.3
75,210 + CCNA_00073 0.41 -0.2
75,213 - CCNA_00073 0.42 -0.2
75,225 - CCNA_00073 0.42 -0.1
75,304 + CCNA_00073 0.48 -0.1
75,304 + CCNA_00073 0.48 +0.4
75,312 - CCNA_00073 0.48 -0.8
75,312 - CCNA_00073 0.48 -0.7
75,312 - CCNA_00073 0.48 -0.2
75,336 - CCNA_00073 0.50 -0.3
75,352 + CCNA_00073 0.51 -0.2
75,352 + CCNA_00073 0.51 -0.4
75,352 + CCNA_00073 0.51 +0.4
75,360 - CCNA_00073 0.51 +1.8
75,375 + CCNA_00073 0.52 +0.6
75,375 + CCNA_00073 0.52 -0.1
75,379 + CCNA_00073 0.52 -0.5
75,417 - CCNA_00073 0.55 -0.4
75,417 - CCNA_00073 0.55 -1.2
75,417 - CCNA_00073 0.55 -0.4
75,444 - CCNA_00073 0.57 -0.4
75,444 - CCNA_00073 0.57 +2.0
75,481 + CCNA_00073 0.59 -0.5
75,520 - CCNA_00073 0.62 -0.4
75,520 - CCNA_00073 0.62 -0.4
75,537 - CCNA_00073 0.63 -1.4
75,611 + CCNA_00073 0.68 -0.2
75,655 + CCNA_00073 0.70 +0.2
75,659 + CCNA_00073 0.71 +0.2
75,716 + CCNA_00073 0.74 -0.2
75,724 - CCNA_00073 0.75 -0.4
75,727 + CCNA_00073 0.75 -0.6
75,727 + CCNA_00073 0.75 +0.1
75,752 - CCNA_00073 0.77 +0.2
75,769 - CCNA_00073 0.78 -0.4
75,776 + CCNA_00073 0.78 -0.1
75,776 + CCNA_00073 0.78 -0.8
75,784 + CCNA_00073 0.79 -0.1
75,791 + CCNA_00073 0.79 -0.3
75,916 + CCNA_00073 0.87 +0.3
75,924 - CCNA_00073 0.88 +0.2
75,930 - CCNA_00073 0.88 -0.3
75,941 + CCNA_00073 0.89 -0.3
75,941 + CCNA_00073 0.89 -0.1
75,949 - CCNA_00073 0.90 -0.4
75,993 + +0.7
76,001 - +0.0
76,052 + +0.0
76,277 + +0.1
76,286 - -0.5
76,286 - -1.5
76,312 + +0.0
76,345 + -1.1
76,371 - +0.8
76,389 + +0.1
76,392 - +0.0
76,457 + +1.3
76,457 + +0.1
76,457 + +0.3
76,462 + +0.3
76,465 - +0.5
76,465 - +0.1
76,465 - +0.4
76,465 - +0.6
76,465 - -0.3
76,465 - +0.3
76,470 - +0.1
76,487 + +0.2
76,487 + -0.4
76,495 - +0.1
76,495 - +0.2
76,495 - -0.5
76,495 - -0.3
76,499 + +0.3
76,536 - +0.2
76,546 - +0.6
76,570 - -0.0
76,582 - -0.2
76,655 + +0.7
76,683 - -0.2
76,683 - +0.8
76,683 - -0.0
76,683 - +0.2
76,683 - +0.4
76,690 + -0.7
76,697 + -0.5
76,722 - CCNA_00074 0.11 -0.2
76,725 + CCNA_00074 0.11 -0.4
76,725 + CCNA_00074 0.11 -0.3
76,733 - CCNA_00074 0.12 -0.1
76,733 - CCNA_00074 0.12 -1.1
76,799 - CCNA_00074 0.15 +0.8
76,835 - CCNA_00074 0.16 +0.4
76,885 - CCNA_00074 0.19 +0.6
76,891 - CCNA_00074 0.19 -0.1
76,963 - CCNA_00074 0.22 +0.9
77,011 + CCNA_00074 0.24 +0.5
77,011 + +0.3
77,011 + CCNA_00074 0.24 -2.1
77,018 - CCNA_00074 0.25 +0.1
77,019 - CCNA_00074 0.25 -1.0
77,019 - CCNA_00074 0.25 +1.0
77,019 - CCNA_00074 0.25 +0.6

Or see this region's nucleotide sequence