Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3106 and Atu3107 are separated by 118 nucleotides Atu3107 and Atu3108 overlap by 8 nucleotides
Atu3106: Atu3106 - sugar ABC transporter substrate-binding protein, at 114,351 to 115,637
Atu3106
Atu3107: Atu3107 - LacI family transcriptional regulator, at 115,756 to 116,817
Atu3107
Atu3108: Atu3108 - hypothetical protein, at 116,810 to 118,693
Atu3108
Position (kb) 115
116
117 Strain fitness (log2 ratio) -2
-1
0
1 at 114.819 kb on - strand, within Atu3106 at 114.819 kb on - strand, within Atu3106 at 114.888 kb on - strand, within Atu3106 at 115.069 kb on + strand, within Atu3106 at 115.077 kb on - strand, within Atu3106 at 115.077 kb on - strand, within Atu3106 at 115.319 kb on - strand, within Atu3106 at 115.427 kb on - strand, within Atu3106 at 115.613 kb on + strand at 115.816 kb on + strand at 115.816 kb on + strand at 115.816 kb on + strand at 115.885 kb on - strand, within Atu3107 at 116.048 kb on + strand, within Atu3107 at 116.144 kb on + strand, within Atu3107 at 116.201 kb on + strand, within Atu3107 at 116.207 kb on - strand, within Atu3107 at 116.209 kb on - strand, within Atu3107 at 116.245 kb on + strand, within Atu3107 at 116.255 kb on + strand, within Atu3107 at 116.263 kb on - strand, within Atu3107 at 116.435 kb on - strand, within Atu3107 at 116.445 kb on - strand, within Atu3107 at 116.447 kb on + strand, within Atu3107 at 116.447 kb on + strand, within Atu3107 at 116.447 kb on + strand, within Atu3107 at 116.493 kb on + strand, within Atu3107 at 116.547 kb on + strand, within Atu3107 at 116.608 kb on + strand, within Atu3107 at 116.616 kb on - strand, within Atu3107 at 116.640 kb on + strand, within Atu3107 at 116.654 kb on + strand, within Atu3107 at 116.964 kb on + strand at 116.966 kb on - strand at 116.977 kb on - strand at 117.034 kb on + strand, within Atu3108 at 117.212 kb on + strand, within Atu3108 at 117.228 kb on - strand, within Atu3108 at 117.243 kb on - strand, within Atu3108 at 117.667 kb on - strand, within Atu3108 at 117.678 kb on + strand, within Atu3108 at 117.688 kb on + strand, within Atu3108 at 117.696 kb on - strand, within Atu3108 at 117.709 kb on + strand, within Atu3108 at 117.722 kb on + strand, within Atu3108 at 117.730 kb on - strand, within Atu3108 at 117.765 kb on - strand, within Atu3108 at 117.772 kb on - strand, within Atu3108 at 117.786 kb on - strand, within Atu3108 at 117.794 kb on - strand, within Atu3108
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 114,819 - Atu3106 0.36 -0.0 114,819 - Atu3106 0.36 -1.3 114,888 - Atu3106 0.42 -0.2 115,069 + Atu3106 0.56 +0.6 115,077 - Atu3106 0.56 -0.3 115,077 - Atu3106 0.56 -0.4 115,319 - Atu3106 0.75 -0.0 115,427 - Atu3106 0.84 +0.3 115,613 + +0.1 115,816 + +0.9 115,816 + +0.9 115,816 + +0.1 115,885 - Atu3107 0.12 -0.2 116,048 + Atu3107 0.27 -0.0 116,144 + Atu3107 0.37 -1.3 116,201 + Atu3107 0.42 +0.3 116,207 - Atu3107 0.42 -0.0 116,209 - Atu3107 0.43 +0.1 116,245 + Atu3107 0.46 +0.4 116,255 + Atu3107 0.47 -0.3 116,263 - Atu3107 0.48 -1.4 116,435 - Atu3107 0.64 +0.3 116,445 - Atu3107 0.65 +0.7 116,447 + Atu3107 0.65 -0.1 116,447 + Atu3107 0.65 +0.3 116,447 + Atu3107 0.65 -0.1 116,493 + Atu3107 0.69 +0.6 116,547 + Atu3107 0.74 +1.3 116,608 + Atu3107 0.80 -0.4 116,616 - Atu3107 0.81 +0.1 116,640 + Atu3107 0.83 -0.3 116,654 + Atu3107 0.85 -0.2 116,964 + -0.2 116,966 - +0.1 116,977 - +0.1 117,034 + Atu3108 0.12 +0.0 117,212 + Atu3108 0.21 -2.0 117,228 - Atu3108 0.22 -0.8 117,243 - Atu3108 0.23 -0.2 117,667 - Atu3108 0.45 -0.3 117,678 + Atu3108 0.46 +0.0 117,688 + Atu3108 0.47 +0.5 117,696 - Atu3108 0.47 +0.1 117,709 + Atu3108 0.48 +0.4 117,722 + Atu3108 0.48 +0.1 117,730 - Atu3108 0.49 +0.0 117,765 - Atu3108 0.51 -0.1 117,772 - Atu3108 0.51 +0.9 117,786 - Atu3108 0.52 -1.4 117,794 - Atu3108 0.52 -0.3
Or see this region's nucleotide sequence