Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27810

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27800 and RR42_RS27805 overlap by 8 nucleotidesRR42_RS27805 and RR42_RS27810 are separated by 11 nucleotidesRR42_RS27810 and RR42_RS27815 are separated by 495 nucleotides RR42_RS27800: RR42_RS27800 - ABC transporter ATP-binding protein, at 1,601,230 to 1,602,303 _RS27800 RR42_RS27805: RR42_RS27805 - ABC transporter permease, at 1,602,296 to 1,603,177 _RS27805 RR42_RS27810: RR42_RS27810 - ABC transporter permease, at 1,603,189 to 1,604,007 _RS27810 RR42_RS27815: RR42_RS27815 - ABC transporter substrate-binding protein, at 1,604,503 to 1,605,534 _RS27815 Position (kb) 1603 1604 1605Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1602.495 kb on + strand, within RR42_RS27805at 1602.538 kb on + strand, within RR42_RS27805at 1602.538 kb on + strand, within RR42_RS27805at 1602.538 kb on + strand, within RR42_RS27805at 1602.538 kb on + strand, within RR42_RS27805at 1602.538 kb on + strand, within RR42_RS27805at 1602.538 kb on + strand, within RR42_RS27805at 1602.538 kb on + strand, within RR42_RS27805at 1602.539 kb on - strand, within RR42_RS27805at 1602.539 kb on - strand, within RR42_RS27805at 1602.539 kb on - strand, within RR42_RS27805at 1602.748 kb on + strand, within RR42_RS27805at 1602.748 kb on + strand, within RR42_RS27805at 1602.772 kb on + strand, within RR42_RS27805at 1602.811 kb on - strand, within RR42_RS27805at 1602.915 kb on + strand, within RR42_RS27805at 1602.915 kb on + strand, within RR42_RS27805at 1602.915 kb on + strand, within RR42_RS27805at 1602.915 kb on + strand, within RR42_RS27805at 1602.916 kb on - strand, within RR42_RS27805at 1602.916 kb on - strand, within RR42_RS27805at 1602.916 kb on - strand, within RR42_RS27805at 1603.562 kb on + strand, within RR42_RS27810at 1603.562 kb on + strand, within RR42_RS27810at 1603.562 kb on + strand, within RR42_RS27810at 1603.562 kb on + strand, within RR42_RS27810at 1603.563 kb on - strand, within RR42_RS27810at 1603.563 kb on - strand, within RR42_RS27810at 1603.563 kb on - strand, within RR42_RS27810at 1603.563 kb on - strand, within RR42_RS27810at 1603.569 kb on - strand, within RR42_RS27810at 1603.569 kb on - strand, within RR42_RS27810at 1603.595 kb on + strand, within RR42_RS27810at 1603.851 kb on - strand, within RR42_RS27810at 1603.851 kb on - strand, within RR42_RS27810at 1604.001 kb on + strandat 1604.378 kb on + strandat 1604.395 kb on + strandat 1604.396 kb on - strandat 1604.396 kb on - strandat 1604.522 kb on + strandat 1604.657 kb on + strand, within RR42_RS27815at 1604.759 kb on + strand, within RR42_RS27815at 1604.819 kb on + strand, within RR42_RS27815

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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1,602,495 + RR42_RS27805 0.23 -1.4
1,602,538 + RR42_RS27805 0.27 +0.4
1,602,538 + RR42_RS27805 0.27 -0.0
1,602,538 + RR42_RS27805 0.27 -1.9
1,602,538 + RR42_RS27805 0.27 -2.1
1,602,538 + RR42_RS27805 0.27 +0.8
1,602,538 + RR42_RS27805 0.27 +0.2
1,602,538 + RR42_RS27805 0.27 +0.2
1,602,539 - RR42_RS27805 0.28 -3.0
1,602,539 - RR42_RS27805 0.28 -2.0
1,602,539 - RR42_RS27805 0.28 -0.9
1,602,748 + RR42_RS27805 0.51 -0.3
1,602,748 + RR42_RS27805 0.51 +0.7
1,602,772 + RR42_RS27805 0.54 +0.5
1,602,811 - RR42_RS27805 0.58 -0.6
1,602,915 + RR42_RS27805 0.70 +0.5
1,602,915 + RR42_RS27805 0.70 -0.1
1,602,915 + RR42_RS27805 0.70 -0.6
1,602,915 + RR42_RS27805 0.70 -0.6
1,602,916 - RR42_RS27805 0.70 -1.5
1,602,916 - RR42_RS27805 0.70 -0.7
1,602,916 - RR42_RS27805 0.70 -2.2
1,603,562 + RR42_RS27810 0.46 -0.4
1,603,562 + RR42_RS27810 0.46 +3.0
1,603,562 + RR42_RS27810 0.46 -0.6
1,603,562 + RR42_RS27810 0.46 -0.4
1,603,563 - RR42_RS27810 0.46 +2.0
1,603,563 - RR42_RS27810 0.46 -0.0
1,603,563 - RR42_RS27810 0.46 -1.2
1,603,563 - RR42_RS27810 0.46 +0.2
1,603,569 - RR42_RS27810 0.46 +0.5
1,603,569 - RR42_RS27810 0.46 +0.3
1,603,595 + RR42_RS27810 0.50 +0.0
1,603,851 - RR42_RS27810 0.81 +0.1
1,603,851 - RR42_RS27810 0.81 +0.5
1,604,001 + +0.8
1,604,378 + -1.5
1,604,395 + +0.0
1,604,396 - -1.2
1,604,396 - +0.3
1,604,522 + -2.3
1,604,657 + RR42_RS27815 0.15 +0.6
1,604,759 + RR42_RS27815 0.25 +0.9
1,604,819 + RR42_RS27815 0.31 +0.3

Or see this region's nucleotide sequence