Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08755

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08750 and RR42_RS08755 are separated by 874 nucleotidesRR42_RS08755 and RR42_RS08760 are separated by 29 nucleotidesRR42_RS08760 and RR42_RS08765 are separated by 55 nucleotides RR42_RS08750: RR42_RS08750 - hemerythrin, at 1,832,634 to 1,833,209 _RS08750 RR42_RS08755: RR42_RS08755 - molybdenum cofactor biosynthesis protein MoeA, at 1,834,084 to 1,835,208 _RS08755 RR42_RS08760: RR42_RS08760 - XRE family transcriptional regulator, at 1,835,238 to 1,835,903 _RS08760 RR42_RS08765: RR42_RS08765 - histidine kinase, at 1,835,959 to 1,837,890 _RS08765 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1833.173 kb on + strandat 1833.232 kb on + strandat 1833.233 kb on - strandat 1833.449 kb on + strandat 1833.450 kb on - strandat 1833.450 kb on - strandat 1833.450 kb on - strandat 1833.541 kb on + strandat 1833.542 kb on - strandat 1833.542 kb on - strandat 1833.560 kb on + strandat 1833.708 kb on + strandat 1833.709 kb on - strandat 1833.896 kb on + strandat 1834.049 kb on + strandat 1834.098 kb on - strandat 1834.098 kb on - strandat 1835.273 kb on - strandat 1835.600 kb on - strand, within RR42_RS08760

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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1,833,173 + -0.5
1,833,232 + -0.0
1,833,233 - -0.5
1,833,449 + -0.2
1,833,450 - +0.5
1,833,450 - -1.8
1,833,450 - -0.9
1,833,541 + +2.9
1,833,542 - -2.5
1,833,542 - +1.0
1,833,560 + -1.0
1,833,708 + -0.0
1,833,709 - -0.6
1,833,896 + +1.0
1,834,049 + +1.1
1,834,098 - -2.2
1,834,098 - -0.5
1,835,273 - +0.1
1,835,600 - RR42_RS08760 0.54 -2.2

Or see this region's nucleotide sequence