Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03735 and RR42_RS03740 are separated by 89 nucleotides RR42_RS03740 and RR42_RS03745 are separated by 21 nucleotides RR42_RS03745 and RR42_RS03750 are separated by 298 nucleotides RR42_RS03750 and RR42_RS03755 overlap by 4 nucleotides
RR42_RS03735: RR42_RS03735 - hemagglutinin, at 823,811 to 825,478
_RS03735
RR42_RS03740: RR42_RS03740 - hypothetical protein, at 825,568 to 825,891
_RS03740
RR42_RS03745: RR42_RS03745 - LysR family transcriptional regulator, at 825,913 to 827,010
_RS03745
RR42_RS03750: RR42_RS03750 - formate dehydrogenase, at 827,309 to 827,824
_RS03750
RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374
_RS03755
Position (kb) 825
826
827
828 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 824.945 kb on + strand, within RR42_RS03735 at 824.945 kb on + strand, within RR42_RS03735 at 824.945 kb on + strand, within RR42_RS03735 at 824.946 kb on - strand, within RR42_RS03735 at 824.946 kb on - strand, within RR42_RS03735 at 824.946 kb on - strand, within RR42_RS03735 at 825.013 kb on + strand, within RR42_RS03735 at 825.013 kb on + strand, within RR42_RS03735 at 825.014 kb on - strand, within RR42_RS03735 at 825.014 kb on - strand, within RR42_RS03735 at 825.053 kb on + strand, within RR42_RS03735 at 825.054 kb on - strand, within RR42_RS03735 at 825.054 kb on - strand, within RR42_RS03735 at 825.110 kb on + strand, within RR42_RS03735 at 825.110 kb on + strand, within RR42_RS03735 at 825.302 kb on - strand, within RR42_RS03735 at 825.474 kb on - strand at 825.485 kb on + strand at 825.979 kb on - strand at 825.986 kb on + strand at 825.987 kb on - strand at 826.187 kb on + strand, within RR42_RS03745 at 826.187 kb on + strand, within RR42_RS03745 at 826.188 kb on - strand, within RR42_RS03745 at 826.188 kb on - strand, within RR42_RS03745 at 826.188 kb on - strand, within RR42_RS03745 at 826.553 kb on + strand, within RR42_RS03745 at 826.553 kb on + strand, within RR42_RS03745 at 826.850 kb on + strand, within RR42_RS03745 at 826.909 kb on - strand at 827.052 kb on - strand at 827.053 kb on + strand at 827.053 kb on + strand at 827.054 kb on - strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.082 kb on + strand at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.434 kb on - strand, within RR42_RS03750 at 827.434 kb on - strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.565 kb on + strand, within RR42_RS03750 at 827.687 kb on + strand, within RR42_RS03750 at 827.688 kb on - strand, within RR42_RS03750 at 827.688 kb on - strand, within RR42_RS03750
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 824,945 + RR42_RS03735 0.68 -0.2 824,945 + RR42_RS03735 0.68 -0.9 824,945 + RR42_RS03735 0.68 +0.3 824,946 - RR42_RS03735 0.68 -0.3 824,946 - RR42_RS03735 0.68 +1.2 824,946 - RR42_RS03735 0.68 +0.9 825,013 + RR42_RS03735 0.72 +0.6 825,013 + RR42_RS03735 0.72 -1.4 825,014 - RR42_RS03735 0.72 +0.8 825,014 - RR42_RS03735 0.72 -1.5 825,053 + RR42_RS03735 0.74 -2.0 825,054 - RR42_RS03735 0.75 +0.3 825,054 - RR42_RS03735 0.75 +0.5 825,110 + RR42_RS03735 0.78 +0.6 825,110 + RR42_RS03735 0.78 -1.1 825,302 - RR42_RS03735 0.89 -1.9 825,474 - +0.6 825,485 + +2.9 825,979 - +0.4 825,986 + -1.0 825,987 - +0.3 826,187 + RR42_RS03745 0.25 -0.7 826,187 + RR42_RS03745 0.25 -0.3 826,188 - RR42_RS03745 0.25 +0.5 826,188 - RR42_RS03745 0.25 +0.3 826,188 - RR42_RS03745 0.25 +0.0 826,553 + RR42_RS03745 0.58 +0.6 826,553 + RR42_RS03745 0.58 -1.0 826,850 + RR42_RS03745 0.85 -0.6 826,909 - -0.0 827,052 - +2.6 827,053 + +1.9 827,053 + -2.6 827,054 - +0.6 827,072 + -0.6 827,072 + -0.3 827,072 + +0.3 827,072 + -0.3 827,072 + +0.0 827,072 + +0.5 827,072 + +0.3 827,072 + +0.2 827,072 + -1.2 827,072 + +0.0 827,073 - +0.4 827,073 - +0.9 827,073 - +1.2 827,073 - -0.3 827,073 - +0.3 827,073 - -0.4 827,073 - -0.7 827,073 - -1.7 827,073 - -0.0 827,073 - +1.1 827,082 + -0.3 827,433 + RR42_RS03750 0.24 -0.1 827,433 + RR42_RS03750 0.24 +0.2 827,433 + RR42_RS03750 0.24 +0.1 827,433 + RR42_RS03750 0.24 +0.6 827,434 - RR42_RS03750 0.24 +0.7 827,434 - RR42_RS03750 0.24 +0.2 827,438 + RR42_RS03750 0.25 +1.6 827,438 + RR42_RS03750 0.25 +0.7 827,438 + RR42_RS03750 0.25 -1.5 827,438 + RR42_RS03750 0.25 -1.9 827,438 + RR42_RS03750 0.25 +0.8 827,438 + RR42_RS03750 0.25 +1.3 827,438 + RR42_RS03750 0.25 -1.7 827,439 - RR42_RS03750 0.25 +0.9 827,439 - RR42_RS03750 0.25 -0.6 827,439 - RR42_RS03750 0.25 -0.7 827,439 - RR42_RS03750 0.25 -0.5 827,519 + RR42_RS03750 0.41 -0.4 827,519 + RR42_RS03750 0.41 -0.4 827,519 + RR42_RS03750 0.41 +1.4 827,519 + RR42_RS03750 0.41 -0.3 827,519 + RR42_RS03750 0.41 -0.7 827,519 + RR42_RS03750 0.41 -1.6 827,519 + RR42_RS03750 0.41 -0.2 827,519 + RR42_RS03750 0.41 -1.3 827,519 + RR42_RS03750 0.41 -2.6 827,565 + RR42_RS03750 0.50 +0.2 827,687 + RR42_RS03750 0.73 -0.1 827,688 - RR42_RS03750 0.73 +0.9 827,688 - RR42_RS03750 0.73 -0.9
Or see this region's nucleotide sequence