Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08260 and BWI76_RS08265 are separated by 129 nucleotides BWI76_RS08265 and BWI76_RS08270 are separated by 291 nucleotides BWI76_RS08270 and BWI76_RS08275 are separated by 50 nucleotides
BWI76_RS08260: BWI76_RS08260 - LysR family transcriptional regulator, at 1,749,079 to 1,750,005
_RS08260
BWI76_RS08265: BWI76_RS08265 - transcriptional repressor, at 1,750,135 to 1,750,587
_RS08265
BWI76_RS08270: BWI76_RS08270 - flavodoxin, at 1,750,879 to 1,751,508
_RS08270
BWI76_RS08275: BWI76_RS08275 - LexA regulated protein, at 1,751,559 to 1,751,852
_RS08275
Position (kb) 1750
1751 Strain fitness (log2 ratio) -1
0
1 at 1749.594 kb on + strand, within BWI76_RS08260 at 1749.845 kb on - strand, within BWI76_RS08260 at 1750.030 kb on - strand at 1750.044 kb on + strand at 1750.688 kb on + strand at 1750.810 kb on + strand at 1751.518 kb on + strand at 1751.526 kb on - strand at 1751.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,749,594 + BWI76_RS08260 0.56 -0.0 1,749,845 - BWI76_RS08260 0.83 -0.1 1,750,030 - -0.0 1,750,044 + -0.0 1,750,688 + -0.1 1,750,810 + -0.6 1,751,518 + -0.2 1,751,526 - -0.5 1,751,571 - -0.1
Or see this region's nucleotide sequence