Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19815 and ABZR87_RS19820 are separated by 229 nucleotides ABZR87_RS19820 and ABZR87_RS19825 are separated by 138 nucleotides
ABZR87_RS19815: ABZR87_RS19815 - MFS transporter, at 817,770 to 819,155
_RS19815
ABZR87_RS19820: ABZR87_RS19820 - IclR family transcriptional regulator C-terminal domain-containing protein, at 819,385 to 820,152
_RS19820
ABZR87_RS19825: ABZR87_RS19825 - sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein, at 820,291 to 822,174
_RS19825
Position (kb) 819
820
821 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 818.533 kb on + strand, within ABZR87_RS19815 at 818.533 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.612 kb on - strand, within ABZR87_RS19815 at 818.612 kb on - strand, within ABZR87_RS19815 at 818.612 kb on - strand, within ABZR87_RS19815 at 818.675 kb on + strand, within ABZR87_RS19815 at 818.676 kb on - strand, within ABZR87_RS19815 at 818.676 kb on - strand, within ABZR87_RS19815 at 818.676 kb on - strand, within ABZR87_RS19815 at 818.821 kb on + strand, within ABZR87_RS19815 at 818.821 kb on + strand, within ABZR87_RS19815 at 818.821 kb on + strand, within ABZR87_RS19815 at 818.822 kb on - strand, within ABZR87_RS19815 at 818.822 kb on - strand, within ABZR87_RS19815 at 818.822 kb on - strand, within ABZR87_RS19815 at 818.822 kb on - strand, within ABZR87_RS19815 at 818.950 kb on + strand, within ABZR87_RS19815 at 818.950 kb on + strand, within ABZR87_RS19815 at 818.962 kb on + strand, within ABZR87_RS19815 at 818.962 kb on + strand, within ABZR87_RS19815 at 818.962 kb on + strand, within ABZR87_RS19815 at 818.962 kb on + strand, within ABZR87_RS19815 at 818.963 kb on - strand, within ABZR87_RS19815 at 818.963 kb on - strand, within ABZR87_RS19815 at 819.049 kb on + strand at 819.050 kb on - strand at 819.050 kb on - strand at 819.050 kb on - strand at 819.053 kb on + strand at 819.053 kb on + strand at 819.054 kb on - strand at 819.054 kb on - strand at 819.064 kb on + strand at 819.065 kb on - strand at 819.065 kb on - strand at 819.136 kb on + strand at 819.136 kb on + strand at 819.136 kb on + strand at 819.136 kb on + strand at 819.136 kb on + strand at 819.137 kb on - strand at 819.171 kb on + strand at 819.171 kb on + strand at 819.171 kb on + strand at 819.172 kb on - strand at 819.172 kb on - strand at 819.217 kb on + strand at 819.217 kb on + strand at 819.217 kb on + strand at 819.218 kb on - strand at 819.218 kb on - strand at 819.218 kb on - strand at 819.218 kb on - strand at 819.218 kb on - strand at 819.233 kb on + strand at 819.233 kb on + strand at 819.234 kb on - strand at 819.234 kb on - strand at 819.234 kb on - strand at 819.296 kb on - strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.364 kb on - strand at 819.364 kb on - strand at 819.386 kb on + strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.541 kb on + strand, within ABZR87_RS19820 at 819.541 kb on + strand, within ABZR87_RS19820 at 819.541 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.635 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.644 kb on + strand, within ABZR87_RS19820 at 819.644 kb on + strand, within ABZR87_RS19820 at 819.645 kb on - strand, within ABZR87_RS19820 at 819.833 kb on + strand, within ABZR87_RS19820 at 819.834 kb on - strand, within ABZR87_RS19820 at 819.912 kb on - strand, within ABZR87_RS19820 at 819.974 kb on + strand, within ABZR87_RS19820 at 819.974 kb on + strand, within ABZR87_RS19820 at 820.001 kb on + strand, within ABZR87_RS19820 at 820.158 kb on + strand at 820.177 kb on + strand at 820.178 kb on - strand at 820.178 kb on - strand at 820.178 kb on - strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.492 kb on + strand, within ABZR87_RS19825 at 820.492 kb on + strand, within ABZR87_RS19825 at 820.492 kb on + strand, within ABZR87_RS19825 at 820.493 kb on - strand, within ABZR87_RS19825 at 820.712 kb on - strand, within ABZR87_RS19825
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 818,533 + ABZR87_RS19815 0.55 -0.8 818,533 + ABZR87_RS19815 0.55 +0.6 818,611 + ABZR87_RS19815 0.61 +1.7 818,611 + ABZR87_RS19815 0.61 -0.1 818,611 + ABZR87_RS19815 0.61 -0.6 818,611 + ABZR87_RS19815 0.61 +0.6 818,611 + ABZR87_RS19815 0.61 -0.3 818,612 - ABZR87_RS19815 0.61 -0.7 818,612 - ABZR87_RS19815 0.61 -0.7 818,612 - ABZR87_RS19815 0.61 -0.1 818,675 + ABZR87_RS19815 0.65 -0.7 818,676 - ABZR87_RS19815 0.65 +0.1 818,676 - ABZR87_RS19815 0.65 +1.1 818,676 - ABZR87_RS19815 0.65 +2.0 818,821 + ABZR87_RS19815 0.76 -0.1 818,821 + ABZR87_RS19815 0.76 -2.3 818,821 + ABZR87_RS19815 0.76 -0.4 818,822 - ABZR87_RS19815 0.76 -1.8 818,822 - ABZR87_RS19815 0.76 +0.1 818,822 - ABZR87_RS19815 0.76 +0.3 818,822 - ABZR87_RS19815 0.76 -0.6 818,950 + ABZR87_RS19815 0.85 -1.6 818,950 + ABZR87_RS19815 0.85 +1.0 818,962 + ABZR87_RS19815 0.86 +1.3 818,962 + ABZR87_RS19815 0.86 +0.6 818,962 + ABZR87_RS19815 0.86 -1.0 818,962 + ABZR87_RS19815 0.86 -1.1 818,963 - ABZR87_RS19815 0.86 -0.4 818,963 - ABZR87_RS19815 0.86 -1.2 819,049 + -1.5 819,050 - +0.0 819,050 - +0.6 819,050 - +0.1 819,053 + -1.3 819,053 + +0.3 819,054 - +1.2 819,054 - +0.6 819,064 + +0.4 819,065 - +0.6 819,065 - +0.6 819,136 + +0.3 819,136 + -0.2 819,136 + -0.3 819,136 + +0.1 819,136 + +0.1 819,137 - +0.1 819,171 + +0.1 819,171 + +0.3 819,171 + -0.3 819,172 - +2.8 819,172 - +3.8 819,217 + -1.8 819,217 + -0.0 819,217 + -0.4 819,218 - +4.5 819,218 - +5.0 819,218 - +5.0 819,218 - +5.3 819,218 - +6.9 819,233 + -0.6 819,233 + +0.3 819,234 - +1.4 819,234 - +1.8 819,234 - +1.6 819,296 - +3.7 819,363 + +0.6 819,363 + -1.0 819,363 + -0.4 819,363 + -1.0 819,364 - +5.2 819,364 - +6.7 819,386 + +1.6 819,387 - +2.6 819,387 - +5.0 819,387 - +3.7 819,387 - +2.1 819,387 - +3.3 819,387 - +5.4 819,387 - +3.9 819,541 + ABZR87_RS19820 0.20 +0.9 819,541 + ABZR87_RS19820 0.20 +0.9 819,541 + ABZR87_RS19820 0.20 +0.7 819,575 + ABZR87_RS19820 0.25 +1.6 819,575 + ABZR87_RS19820 0.25 +0.3 819,575 + ABZR87_RS19820 0.25 +0.8 819,575 + ABZR87_RS19820 0.25 +0.7 819,575 + ABZR87_RS19820 0.25 +0.8 819,575 - ABZR87_RS19820 0.25 +4.4 819,576 - ABZR87_RS19820 0.25 +4.2 819,576 - ABZR87_RS19820 0.25 +4.5 819,576 - ABZR87_RS19820 0.25 +3.7 819,576 - ABZR87_RS19820 0.25 +4.3 819,635 + ABZR87_RS19820 0.33 +1.2 819,642 + ABZR87_RS19820 0.33 +1.6 819,642 + ABZR87_RS19820 0.33 +1.1 819,642 + ABZR87_RS19820 0.33 +1.7 819,643 - ABZR87_RS19820 0.34 +3.1 819,643 - ABZR87_RS19820 0.34 +4.6 819,643 - ABZR87_RS19820 0.34 +3.3 819,643 - ABZR87_RS19820 0.34 +2.2 819,643 - ABZR87_RS19820 0.34 +3.5 819,643 - ABZR87_RS19820 0.34 +4.8 819,643 - ABZR87_RS19820 0.34 +4.2 819,643 - ABZR87_RS19820 0.34 +4.0 819,644 + ABZR87_RS19820 0.34 +1.7 819,644 + ABZR87_RS19820 0.34 +0.1 819,645 - ABZR87_RS19820 0.34 +4.3 819,833 + ABZR87_RS19820 0.58 +1.0 819,834 - ABZR87_RS19820 0.58 +3.2 819,912 - ABZR87_RS19820 0.69 +3.8 819,974 + ABZR87_RS19820 0.77 +1.1 819,974 + ABZR87_RS19820 0.77 +1.7 820,001 + ABZR87_RS19820 0.80 +1.9 820,158 + +2.4 820,177 + -0.7 820,178 - +3.5 820,178 - +1.9 820,178 - +2.2 820,250 + -0.4 820,250 + -0.1 820,250 + +1.1 820,250 + +1.3 820,250 + -0.3 820,250 + -0.1 820,250 + +0.0 820,250 + +1.2 820,250 + +0.0 820,251 - +3.3 820,251 - +3.8 820,251 - +2.8 820,251 - +2.6 820,251 - +1.3 820,251 - +1.7 820,251 - +1.9 820,251 - +2.8 820,251 - +2.8 820,251 - +2.5 820,251 - +2.9 820,251 - +2.3 820,492 + ABZR87_RS19825 0.11 -0.4 820,492 + ABZR87_RS19825 0.11 -0.1 820,492 + ABZR87_RS19825 0.11 -1.8 820,493 - ABZR87_RS19825 0.11 +0.6 820,712 - ABZR87_RS19825 0.22 +0.4
Or see this region's nucleotide sequence