Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00135 and ABZR87_RS00140 are separated by 55 nucleotides ABZR87_RS00140 and ABZR87_RS00145 overlap by 4 nucleotides ABZR87_RS00145 and ABZR87_RS00150 are separated by 22 nucleotides ABZR87_RS00150 and ABZR87_RS00155 are separated by 114 nucleotides
ABZR87_RS00135: ABZR87_RS00135 - dihydroxy-acid dehydratase, at 26,837 to 28,510
_RS00135
ABZR87_RS00140: ABZR87_RS00140 - DUF2486 family protein, at 28,566 to 28,991
_RS00140
ABZR87_RS00145: ABZR87_RS00145 - DNA polymerase III subunit chi, at 28,988 to 29,416
_RS00145
ABZR87_RS00150: ABZR87_RS00150 - leucyl aminopeptidase, at 29,439 to 30,947
_RS00150
ABZR87_RS00155: ABZR87_RS00155 - LPS export ABC transporter permease LptF, at 31,062 to 32,180
_RS00155
Position (kb) 29
30
31 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 28.439 kb on + strand at 28.439 kb on + strand at 28.439 kb on + strand at 28.440 kb on - strand at 28.441 kb on + strand at 28.441 kb on + strand at 28.442 kb on - strand at 28.442 kb on - strand at 28.442 kb on - strand at 28.442 kb on - strand at 28.899 kb on + strand, within ABZR87_RS00140 at 28.899 kb on + strand, within ABZR87_RS00140 at 28.899 kb on + strand, within ABZR87_RS00140 at 28.900 kb on - strand, within ABZR87_RS00140 at 28.900 kb on - strand, within ABZR87_RS00140 at 28.975 kb on + strand at 29.371 kb on - strand, within ABZR87_RS00145 at 29.416 kb on + strand at 29.416 kb on + strand at 29.416 kb on + strand at 29.416 kb on + strand at 29.416 kb on + strand at 29.416 kb on + strand at 29.417 kb on - strand at 29.417 kb on - strand at 29.417 kb on - strand at 29.417 kb on - strand at 29.551 kb on + strand at 29.656 kb on + strand, within ABZR87_RS00150 at 29.657 kb on - strand, within ABZR87_RS00150 at 29.657 kb on - strand, within ABZR87_RS00150 at 29.657 kb on - strand, within ABZR87_RS00150 at 29.746 kb on + strand, within ABZR87_RS00150 at 29.746 kb on + strand, within ABZR87_RS00150 at 29.746 kb on + strand, within ABZR87_RS00150 at 29.747 kb on - strand, within ABZR87_RS00150 at 29.747 kb on - strand, within ABZR87_RS00150 at 29.747 kb on - strand, within ABZR87_RS00150 at 29.747 kb on - strand, within ABZR87_RS00150 at 29.839 kb on + strand, within ABZR87_RS00150 at 29.839 kb on + strand, within ABZR87_RS00150 at 29.839 kb on + strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 29.840 kb on - strand, within ABZR87_RS00150 at 30.058 kb on + strand, within ABZR87_RS00150 at 30.058 kb on + strand, within ABZR87_RS00150 at 30.058 kb on + strand, within ABZR87_RS00150 at 30.058 kb on + strand, within ABZR87_RS00150 at 30.058 kb on + strand, within ABZR87_RS00150 at 30.059 kb on - strand, within ABZR87_RS00150 at 30.059 kb on - strand, within ABZR87_RS00150 at 30.059 kb on - strand, within ABZR87_RS00150 at 30.169 kb on + strand, within ABZR87_RS00150 at 30.169 kb on + strand, within ABZR87_RS00150 at 30.319 kb on + strand, within ABZR87_RS00150 at 30.320 kb on - strand, within ABZR87_RS00150 at 30.320 kb on - strand, within ABZR87_RS00150 at 30.521 kb on - strand, within ABZR87_RS00150 at 30.985 kb on + strand at 30.985 kb on + strand at 30.985 kb on + strand at 30.986 kb on - strand at 30.988 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 28,439 + -0.4 28,439 + -0.2 28,439 + +1.8 28,440 - +0.2 28,441 + -0.3 28,441 + -0.3 28,442 - +0.8 28,442 - -0.2 28,442 - +0.1 28,442 - +0.5 28,899 + ABZR87_RS00140 0.78 +0.2 28,899 + ABZR87_RS00140 0.78 -0.5 28,899 + ABZR87_RS00140 0.78 -0.1 28,900 - ABZR87_RS00140 0.78 +0.9 28,900 - ABZR87_RS00140 0.78 -0.9 28,975 + +1.5 29,371 - ABZR87_RS00145 0.89 +0.8 29,416 + -1.4 29,416 + -0.6 29,416 + +0.8 29,416 + +1.1 29,416 + -0.2 29,416 + +2.4 29,417 - +1.0 29,417 - +0.2 29,417 - -1.2 29,417 - -1.2 29,551 + -2.4 29,656 + ABZR87_RS00150 0.14 -2.3 29,657 - ABZR87_RS00150 0.14 -0.8 29,657 - ABZR87_RS00150 0.14 -0.9 29,657 - ABZR87_RS00150 0.14 -2.0 29,746 + ABZR87_RS00150 0.20 -3.9 29,746 + ABZR87_RS00150 0.20 -3.4 29,746 + ABZR87_RS00150 0.20 +0.4 29,747 - ABZR87_RS00150 0.20 -3.9 29,747 - ABZR87_RS00150 0.20 -1.8 29,747 - ABZR87_RS00150 0.20 -3.2 29,747 - ABZR87_RS00150 0.20 -0.5 29,839 + ABZR87_RS00150 0.27 -2.7 29,839 + ABZR87_RS00150 0.27 -1.1 29,839 + ABZR87_RS00150 0.27 -2.1 29,840 - ABZR87_RS00150 0.27 -1.4 29,840 - ABZR87_RS00150 0.27 -1.4 29,840 - ABZR87_RS00150 0.27 -2.2 29,840 - ABZR87_RS00150 0.27 -2.4 29,840 - ABZR87_RS00150 0.27 -2.3 29,840 - ABZR87_RS00150 0.27 -2.9 29,840 - ABZR87_RS00150 0.27 -2.6 29,840 - ABZR87_RS00150 0.27 -1.2 29,840 - ABZR87_RS00150 0.27 -1.5 30,058 + ABZR87_RS00150 0.41 -1.1 30,058 + ABZR87_RS00150 0.41 +0.1 30,058 + ABZR87_RS00150 0.41 -0.5 30,058 + ABZR87_RS00150 0.41 -2.4 30,058 + ABZR87_RS00150 0.41 -2.5 30,059 - ABZR87_RS00150 0.41 -1.7 30,059 - ABZR87_RS00150 0.41 -2.1 30,059 - ABZR87_RS00150 0.41 -1.0 30,169 + ABZR87_RS00150 0.48 -2.8 30,169 + ABZR87_RS00150 0.48 -0.8 30,319 + ABZR87_RS00150 0.58 +1.4 30,320 - ABZR87_RS00150 0.58 -1.1 30,320 - ABZR87_RS00150 0.58 -1.1 30,521 - ABZR87_RS00150 0.72 -1.4 30,985 + -2.0 30,985 + -0.2 30,985 + -0.8 30,986 - -0.8 30,988 + +0.1
Or see this region's nucleotide sequence