Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3866

Experiment: Dino_ML3_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3865 and Dshi_3866 are separated by 111 nucleotidesDshi_3866 and Dshi_3867 are separated by 4 nucleotidesDshi_3867 and Dshi_3868 are separated by 95 nucleotides Dshi_3865: Dshi_3865 - hypothetical protein (RefSeq), at 74,804 to 75,793 _3865 Dshi_3866: Dshi_3866 - glycosyl transferase group 1 (RefSeq), at 75,905 to 79,813 _3866 Dshi_3867: Dshi_3867 - hypothetical protein (RefSeq), at 79,818 to 80,708 _3867 Dshi_3868: Dshi_3868 - UDP-glucose 4-epimerase (RefSeq), at 80,804 to 81,883 _3868 Position (kb) 75 76 77 78 79 80Strain fitness (log2 ratio) -2 -1 0 1at 74.914 kb on + strand, within Dshi_3865at 74.954 kb on - strand, within Dshi_3865at 75.023 kb on + strand, within Dshi_3865at 75.078 kb on + strand, within Dshi_3865at 75.086 kb on - strand, within Dshi_3865at 75.252 kb on - strand, within Dshi_3865at 75.278 kb on - strand, within Dshi_3865at 75.291 kb on - strand, within Dshi_3865at 75.376 kb on - strand, within Dshi_3865at 75.376 kb on - strand, within Dshi_3865at 75.479 kb on + strand, within Dshi_3865at 75.485 kb on - strand, within Dshi_3865at 75.487 kb on - strand, within Dshi_3865at 75.499 kb on + strand, within Dshi_3865at 75.542 kb on - strand, within Dshi_3865at 75.578 kb on + strand, within Dshi_3865at 75.604 kb on + strand, within Dshi_3865at 75.604 kb on + strand, within Dshi_3865at 75.624 kb on + strand, within Dshi_3865at 75.668 kb on - strand, within Dshi_3865at 75.773 kb on - strandat 75.792 kb on + strandat 75.910 kb on - strandat 75.969 kb on + strandat 76.099 kb on + strandat 76.172 kb on + strandat 76.273 kb on + strandat 76.401 kb on - strand, within Dshi_3866at 76.408 kb on + strand, within Dshi_3866at 76.522 kb on + strand, within Dshi_3866at 76.530 kb on - strand, within Dshi_3866at 76.587 kb on - strand, within Dshi_3866at 76.621 kb on - strand, within Dshi_3866at 76.698 kb on + strand, within Dshi_3866at 76.777 kb on + strand, within Dshi_3866at 76.777 kb on + strand, within Dshi_3866at 76.784 kb on - strand, within Dshi_3866at 76.785 kb on - strandat 76.837 kb on - strand, within Dshi_3866at 76.839 kb on + strand, within Dshi_3866at 76.847 kb on - strand, within Dshi_3866at 76.916 kb on + strand, within Dshi_3866at 77.030 kb on - strand, within Dshi_3866at 77.035 kb on - strand, within Dshi_3866at 77.140 kb on - strand, within Dshi_3866at 77.140 kb on - strand, within Dshi_3866at 77.140 kb on - strand, within Dshi_3866at 77.174 kb on + strand, within Dshi_3866at 77.277 kb on + strand, within Dshi_3866at 77.396 kb on + strand, within Dshi_3866at 77.404 kb on - strand, within Dshi_3866at 77.434 kb on + strand, within Dshi_3866at 77.494 kb on + strand, within Dshi_3866at 77.494 kb on + strand, within Dshi_3866at 77.536 kb on + strand, within Dshi_3866at 77.585 kb on - strand, within Dshi_3866at 77.741 kb on + strand, within Dshi_3866at 77.891 kb on - strand, within Dshi_3866at 78.031 kb on - strand, within Dshi_3866at 78.036 kb on - strand, within Dshi_3866at 78.053 kb on - strand, within Dshi_3866at 78.078 kb on + strand, within Dshi_3866at 78.078 kb on + strand, within Dshi_3866at 78.078 kb on + strand, within Dshi_3866at 78.088 kb on + strand, within Dshi_3866at 78.169 kb on + strand, within Dshi_3866at 78.323 kb on - strand, within Dshi_3866at 78.335 kb on - strand, within Dshi_3866at 78.398 kb on - strand, within Dshi_3866at 78.460 kb on - strand, within Dshi_3866at 78.474 kb on + strand, within Dshi_3866at 78.559 kb on - strand, within Dshi_3866at 78.645 kb on + strand, within Dshi_3866at 78.653 kb on - strand, within Dshi_3866at 78.682 kb on + strand, within Dshi_3866at 78.682 kb on + strand, within Dshi_3866at 78.682 kb on + strand, within Dshi_3866at 78.745 kb on - strand, within Dshi_3866at 78.838 kb on + strand, within Dshi_3866at 78.838 kb on + strand, within Dshi_3866at 78.848 kb on + strand, within Dshi_3866at 78.901 kb on + strand, within Dshi_3866at 78.910 kb on + strand, within Dshi_3866at 78.926 kb on - strand, within Dshi_3866at 78.962 kb on + strand, within Dshi_3866at 78.986 kb on + strand, within Dshi_3866at 79.035 kb on - strand, within Dshi_3866at 79.049 kb on - strand, within Dshi_3866at 79.065 kb on - strand, within Dshi_3866at 79.293 kb on + strand, within Dshi_3866at 79.381 kb on + strand, within Dshi_3866at 79.429 kb on - strandat 79.522 kb on + strandat 79.598 kb on + strandat 79.598 kb on + strandat 79.606 kb on - strandat 79.606 kb on - strandat 79.645 kb on + strandat 79.653 kb on - strandat 79.736 kb on + strandat 79.764 kb on + strandat 79.928 kb on + strand, within Dshi_3867at 79.936 kb on - strand, within Dshi_3867at 79.938 kb on + strand, within Dshi_3867at 79.943 kb on + strand, within Dshi_3867at 79.947 kb on + strand, within Dshi_3867at 79.974 kb on - strand, within Dshi_3867at 80.009 kb on + strand, within Dshi_3867at 80.011 kb on + strand, within Dshi_3867at 80.039 kb on - strand, within Dshi_3867at 80.047 kb on + strand, within Dshi_3867at 80.171 kb on - strand, within Dshi_3867at 80.198 kb on + strand, within Dshi_3867at 80.399 kb on - strand, within Dshi_3867at 80.428 kb on + strand, within Dshi_3867at 80.428 kb on + strand, within Dshi_3867at 80.428 kb on + strand, within Dshi_3867at 80.466 kb on - strand, within Dshi_3867at 80.519 kb on + strand, within Dshi_3867at 80.534 kb on + strand, within Dshi_3867at 80.554 kb on + strand, within Dshi_3867at 80.603 kb on + strand, within Dshi_3867at 80.643 kb on + strandat 80.683 kb on + strandat 80.683 kb on + strandat 80.683 kb on + strandat 80.683 kb on - strandat 80.698 kb on + strandat 80.711 kb on - strandat 80.758 kb on - strandat 80.769 kb on + strandat 80.777 kb on - strandat 80.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq
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74,914 + Dshi_3865 0.11 +0.1
74,954 - Dshi_3865 0.15 +0.3
75,023 + Dshi_3865 0.22 -0.2
75,078 + Dshi_3865 0.28 -1.2
75,086 - Dshi_3865 0.28 -0.2
75,252 - Dshi_3865 0.45 +1.3
75,278 - Dshi_3865 0.48 +0.4
75,291 - Dshi_3865 0.49 +0.1
75,376 - Dshi_3865 0.58 +0.2
75,376 - Dshi_3865 0.58 -2.3
75,479 + Dshi_3865 0.68 -0.3
75,485 - Dshi_3865 0.69 +0.9
75,487 - Dshi_3865 0.69 -0.0
75,499 + Dshi_3865 0.70 +0.1
75,542 - Dshi_3865 0.75 +1.3
75,578 + Dshi_3865 0.78 +0.4
75,604 + Dshi_3865 0.81 +0.8
75,604 + Dshi_3865 0.81 -0.1
75,624 + Dshi_3865 0.83 +0.5
75,668 - Dshi_3865 0.87 -1.1
75,773 - -0.2
75,792 + +0.5
75,910 - -0.3
75,969 + +0.3
76,099 + +0.1
76,172 + +0.8
76,273 + -0.3
76,401 - Dshi_3866 0.13 -0.9
76,408 + Dshi_3866 0.13 -0.0
76,522 + Dshi_3866 0.16 +0.3
76,530 - Dshi_3866 0.16 +0.1
76,587 - Dshi_3866 0.17 -0.3
76,621 - Dshi_3866 0.18 -0.5
76,698 + Dshi_3866 0.20 -0.3
76,777 + Dshi_3866 0.22 -0.3
76,777 + Dshi_3866 0.22 -1.5
76,784 - Dshi_3866 0.22 -0.2
76,785 - -0.9
76,837 - Dshi_3866 0.24 -1.2
76,839 + Dshi_3866 0.24 +0.6
76,847 - Dshi_3866 0.24 +0.8
76,916 + Dshi_3866 0.26 +0.0
77,030 - Dshi_3866 0.29 +0.3
77,035 - Dshi_3866 0.29 -0.6
77,140 - Dshi_3866 0.32 +0.4
77,140 - Dshi_3866 0.32 +0.7
77,140 - Dshi_3866 0.32 -0.5
77,174 + Dshi_3866 0.32 -0.6
77,277 + Dshi_3866 0.35 -0.9
77,396 + Dshi_3866 0.38 -0.0
77,404 - Dshi_3866 0.38 -0.3
77,434 + Dshi_3866 0.39 -1.2
77,494 + Dshi_3866 0.41 -0.9
77,494 + Dshi_3866 0.41 -0.6
77,536 + Dshi_3866 0.42 +0.2
77,585 - Dshi_3866 0.43 -0.5
77,741 + Dshi_3866 0.47 -0.4
77,891 - Dshi_3866 0.51 +0.1
78,031 - Dshi_3866 0.54 -0.7
78,036 - Dshi_3866 0.55 -0.7
78,053 - Dshi_3866 0.55 -0.5
78,078 + Dshi_3866 0.56 -1.5
78,078 + Dshi_3866 0.56 -0.4
78,078 + Dshi_3866 0.56 +0.6
78,088 + Dshi_3866 0.56 +0.1
78,169 + Dshi_3866 0.58 -0.1
78,323 - Dshi_3866 0.62 +0.8
78,335 - Dshi_3866 0.62 -0.4
78,398 - Dshi_3866 0.64 -0.0
78,460 - Dshi_3866 0.65 +0.5
78,474 + Dshi_3866 0.66 -0.0
78,559 - Dshi_3866 0.68 -0.4
78,645 + Dshi_3866 0.70 +0.5
78,653 - Dshi_3866 0.70 -0.5
78,682 + Dshi_3866 0.71 -0.6
78,682 + Dshi_3866 0.71 +0.1
78,682 + Dshi_3866 0.71 -0.3
78,745 - Dshi_3866 0.73 -1.5
78,838 + Dshi_3866 0.75 -0.7
78,838 + Dshi_3866 0.75 -0.3
78,848 + Dshi_3866 0.75 -0.4
78,901 + Dshi_3866 0.77 -0.1
78,910 + Dshi_3866 0.77 -0.4
78,926 - Dshi_3866 0.77 -0.2
78,962 + Dshi_3866 0.78 +0.2
78,986 + Dshi_3866 0.79 -0.5
79,035 - Dshi_3866 0.80 +0.2
79,049 - Dshi_3866 0.80 -0.6
79,065 - Dshi_3866 0.81 -0.6
79,293 + Dshi_3866 0.87 -0.5
79,381 + Dshi_3866 0.89 -0.4
79,429 - +0.7
79,522 + -0.5
79,598 + -1.1
79,598 + -0.3
79,606 - +0.4
79,606 - -1.0
79,645 + -0.0
79,653 - -0.4
79,736 + -0.3
79,764 + +0.3
79,928 + Dshi_3867 0.12 -0.9
79,936 - Dshi_3867 0.13 +0.1
79,938 + Dshi_3867 0.13 -0.1
79,943 + Dshi_3867 0.14 +1.2
79,947 + Dshi_3867 0.14 -0.1
79,974 - Dshi_3867 0.18 -1.6
80,009 + Dshi_3867 0.21 +0.5
80,011 + Dshi_3867 0.22 -0.5
80,039 - Dshi_3867 0.25 -0.3
80,047 + Dshi_3867 0.26 -0.1
80,171 - Dshi_3867 0.40 +0.1
80,198 + Dshi_3867 0.43 -1.6
80,399 - Dshi_3867 0.65 -0.1
80,428 + Dshi_3867 0.68 -0.5
80,428 + Dshi_3867 0.68 -0.1
80,428 + Dshi_3867 0.68 +1.0
80,466 - Dshi_3867 0.73 -0.2
80,519 + Dshi_3867 0.79 +0.1
80,534 + Dshi_3867 0.80 -0.1
80,554 + Dshi_3867 0.83 -0.9
80,603 + Dshi_3867 0.88 -0.3
80,643 + -1.2
80,683 + -1.5
80,683 + -0.2
80,683 + -1.1
80,683 - +0.3
80,698 + +0.1
80,711 - -1.2
80,758 - -1.5
80,769 + -0.8
80,777 - +0.2
80,803 - +0.7

Or see this region's nucleotide sequence