Experiment: Dino_ML3_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0900 and Dshi_0901 are separated by 4 nucleotides Dshi_0901 and Dshi_0902 overlap by 4 nucleotides
Dshi_0900: Dshi_0900 - hypothetical protein (RefSeq), at 922,370 to 924,292
_0900
Dshi_0901: Dshi_0901 - ABC transporter related (RefSeq), at 924,297 to 925,022
_0901
Dshi_0902: Dshi_0902 - protein of unknown function DUF214 (RefSeq), at 925,019 to 926,218
_0902
Position (kb) 924
925
926 Strain fitness (log2 ratio) -1
0
1 at 923.319 kb on + strand, within Dshi_0900 at 923.473 kb on + strand, within Dshi_0900 at 923.559 kb on + strand, within Dshi_0900 at 923.582 kb on - strand, within Dshi_0900 at 923.646 kb on - strand, within Dshi_0900 at 923.918 kb on - strand, within Dshi_0900 at 923.989 kb on + strand, within Dshi_0900 at 924.040 kb on + strand, within Dshi_0900 at 924.217 kb on + strand at 924.432 kb on + strand, within Dshi_0901 at 924.666 kb on + strand, within Dshi_0901 at 924.673 kb on - strand, within Dshi_0901 at 924.731 kb on + strand, within Dshi_0901 at 924.774 kb on - strand, within Dshi_0901 at 924.886 kb on - strand, within Dshi_0901 at 924.993 kb on - strand at 925.619 kb on - strand, within Dshi_0902 at 925.719 kb on - strand, within Dshi_0902 at 925.789 kb on + strand, within Dshi_0902 at 925.797 kb on - strand, within Dshi_0902 at 925.812 kb on + strand, within Dshi_0902 at 925.830 kb on - strand, within Dshi_0902 at 925.889 kb on - strand, within Dshi_0902 at 926.003 kb on - strand, within Dshi_0902 at 926.003 kb on - strand, within Dshi_0902 at 926.017 kb on + strand, within Dshi_0902
Per-strain Table
Position Strand Gene LocusTag Fraction Dino_ML3_MIT diversity barseq remove 923,319 + Dshi_0900 0.49 +0.6 923,473 + Dshi_0900 0.57 +0.7 923,559 + Dshi_0900 0.62 +0.9 923,582 - Dshi_0900 0.63 -0.2 923,646 - Dshi_0900 0.66 -0.2 923,918 - Dshi_0900 0.80 -0.5 923,989 + Dshi_0900 0.84 -1.3 924,040 + Dshi_0900 0.87 +0.6 924,217 + +0.2 924,432 + Dshi_0901 0.19 -0.3 924,666 + Dshi_0901 0.51 -0.6 924,673 - Dshi_0901 0.52 -0.1 924,731 + Dshi_0901 0.60 -0.5 924,774 - Dshi_0901 0.66 -0.5 924,886 - Dshi_0901 0.81 +0.6 924,993 - -0.6 925,619 - Dshi_0902 0.50 -0.2 925,719 - Dshi_0902 0.58 -1.1 925,789 + Dshi_0902 0.64 -0.1 925,797 - Dshi_0902 0.65 +0.5 925,812 + Dshi_0902 0.66 -0.4 925,830 - Dshi_0902 0.68 -0.7 925,889 - Dshi_0902 0.72 -0.7 926,003 - Dshi_0902 0.82 -0.2 926,003 - Dshi_0902 0.82 +0.6 926,017 + Dshi_0902 0.83 +0.2
Or see this region's nucleotide sequence