Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2011

Experiment: Nitrate reduction, replicate B t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B t2
2,296,115	+		Pf1N1B4_2010	0.53	-0.0
2,296,116	-		Pf1N1B4_2010	0.53	-0.0
2,296,116	-		Pf1N1B4_2010	0.53	-0.0
2,296,116	-		Pf1N1B4_2010	0.53	-0.0
2,296,205	+		Pf1N1B4_2010	0.60	-0.0
2,296,205	+		Pf1N1B4_2010	0.60	-0.0
2,296,205	+				-0.0
2,296,205	+		Pf1N1B4_2010	0.60	-3.4
2,296,206	-		Pf1N1B4_2010	0.60	-0.0
2,296,206	-		Pf1N1B4_2010	0.60	-3.0
2,296,206	-				-0.0
2,296,262	-		Pf1N1B4_2010	0.64	-4.4
2,296,262	-		Pf1N1B4_2010	0.64	-1.3
2,296,427	+		Pf1N1B4_2010	0.75	-0.0
2,296,427	+		Pf1N1B4_2010	0.75	-0.0
2,296,469	+		Pf1N1B4_2010	0.78	-0.0
2,296,469	+		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-0.0
2,296,470	-		Pf1N1B4_2010	0.78	-4.3
2,296,496	+		Pf1N1B4_2010	0.80	-2.8
2,296,496	+		Pf1N1B4_2010	0.80	-2.2
2,296,496	+		Pf1N1B4_2010	0.80	-0.0
2,296,497	-		Pf1N1B4_2010	0.80	-0.0
2,296,613	+		Pf1N1B4_2010	0.89	-0.0
2,296,614	-		Pf1N1B4_2010	0.89	-0.0
2,296,614	-		Pf1N1B4_2010	0.89	-0.0
2,296,614	-		Pf1N1B4_2010	0.89	-0.0
2,296,700	+				-0.5
2,296,700	+				-0.0
2,296,700	+				-0.0
2,296,700	+				-4.1
2,296,700	+				-0.0
2,296,700	+				-0.0
2,296,701	-				-0.0
2,296,701	-				-0.0
2,296,701	-				-0.0
2,296,779	+				-0.0
2,296,779	+				-3.5
2,296,780	-				-4.3
2,296,780	-				-0.0
2,296,780	-				-0.0
2,296,780	-				-0.0
2,296,780	-				-4.5
2,296,953	-				-0.0
2,296,953	-				-0.0
2,297,010	+				-2.4
2,297,011	-		Pf1N1B4_2011	0.12	-0.0
2,297,065	+		Pf1N1B4_2011	0.15	-0.0
2,297,157	+		Pf1N1B4_2011	0.21	-2.5
2,297,183	+		Pf1N1B4_2011	0.22	-0.0
2,297,184	-		Pf1N1B4_2011	0.22	-0.0
2,297,184	-		Pf1N1B4_2011	0.22	-3.9
2,297,221	+		Pf1N1B4_2011	0.24	-0.0
2,297,221	+		Pf1N1B4_2011	0.24	-0.0
2,297,222	-		Pf1N1B4_2011	0.24	-0.0
2,297,222	-		Pf1N1B4_2011	0.24	-3.8
2,297,593	+		Pf1N1B4_2011	0.45	-0.0
2,297,593	+		Pf1N1B4_2011	0.45	-0.0
2,297,593	+		Pf1N1B4_2011	0.45	-0.0
2,297,593	+		Pf1N1B4_2011	0.45	-0.0
2,297,594	-		Pf1N1B4_2011	0.45	-0.0
2,297,594	-		Pf1N1B4_2011	0.45	-5.0
2,297,594	-		Pf1N1B4_2011	0.45	-0.0
2,297,594	-		Pf1N1B4_2011	0.45	-0.0
2,297,599	+		Pf1N1B4_2011	0.45	-0.0
2,297,599	+		Pf1N1B4_2011	0.45	-0.0
2,297,600	-		Pf1N1B4_2011	0.45	-1.3
2,297,600	-				-0.0
2,297,600	-		Pf1N1B4_2011	0.45	-0.0
2,297,617	+		Pf1N1B4_2011	0.46	-0.0
2,297,617	+		Pf1N1B4_2011	0.46	-1.0
2,297,617	+		Pf1N1B4_2011	0.46	-3.5
2,297,617	+		Pf1N1B4_2011	0.46	-0.0
2,297,617	+		Pf1N1B4_2011	0.46	-0.0
2,297,617	+		Pf1N1B4_2011	0.46	-0.0
2,297,618	-		Pf1N1B4_2011	0.46	-4.4
2,297,618	-		Pf1N1B4_2011	0.46	-3.4
2,297,861	-		Pf1N1B4_2011	0.59	-0.0
2,297,874	+		Pf1N1B4_2011	0.60	-3.1
2,297,874	+		Pf1N1B4_2011	0.60	-0.0
2,297,891	-		Pf1N1B4_2011	0.61	-0.0
2,297,891	-		Pf1N1B4_2011	0.61	-0.0
2,297,891	-		Pf1N1B4_2011	0.61	-0.0
2,297,891	-		Pf1N1B4_2011	0.61	-2.8
2,298,067	+		Pf1N1B4_2011	0.71	-0.0
2,298,067	+		Pf1N1B4_2011	0.71	-2.9
2,298,067	+		Pf1N1B4_2011	0.71	-0.0
2,298,068	-		Pf1N1B4_2011	0.71	-0.0
2,298,068	-		Pf1N1B4_2011	0.71	-0.0
2,298,230	-		Pf1N1B4_2011	0.80	-0.0
2,298,283	+		Pf1N1B4_2011	0.83	-2.6
2,298,283	+		Pf1N1B4_2011	0.83	-0.0
2,298,283	+		Pf1N1B4_2011	0.83	-2.8
2,298,283	+		Pf1N1B4_2011	0.83	-0.0
2,298,283	+		Pf1N1B4_2011	0.83	-0.0
2,298,284	-		Pf1N1B4_2011	0.83	-0.0
2,298,284	-		Pf1N1B4_2011	0.83	-0.0
2,298,284	-		Pf1N1B4_2011	0.83	-0.0
2,298,284	-		Pf1N1B4_2011	0.83	-0.0
2,298,284	-		Pf1N1B4_2011	0.83	-0.0
2,298,284	-		Pf1N1B4_2011	0.83	-0.0
2,298,284	-		Pf1N1B4_2011	0.83	-0.0
2,298,284	-		Pf1N1B4_2011	0.83	-0.0
2,298,572	+				-0.0
2,298,572	+				-0.6
2,298,572	+				-1.0
2,298,573	-				-4.5
2,298,573	-				-0.0
2,298,573	-				-0.0
2,298,597	+				-0.0
2,298,598	-				-0.0
2,298,611	+				-0.0
2,298,612	-				-2.2
2,298,612	-				-0.0
2,298,612	-				-2.0
2,298,619	+				-0.0
2,298,620	-				-0.0
2,298,717	+				-0.0
2,298,727	+				-0.0
2,298,727	+				-1.7
2,298,728	-				-2.0
2,298,742	+				-0.0
2,298,743	-				-0.0
2,298,743	-				-3.0
2,298,796	+				-2.1
2,298,796	+				-0.0
2,298,796	+				-0.0
2,298,796	+				-1.7
2,298,796	+				-0.0
2,298,797	-				-0.0
2,298,797	-				-0.0
2,298,797	-				-0.0
2,298,870	+				-0.0
2,298,870	+				+0.3
2,298,891	+				-0.0
2,298,891	+				-0.0
2,298,892	-				-0.0
2,298,892	-				-0.0
2,298,892	-				-0.0
2,298,892	-				-0.0
2,298,892	-				-0.0
2,298,892	-				-0.0
2,298,892	-				-2.2
2,298,904	-				-0.0
2,298,957	+				-0.0
2,298,957	+				-0.0
2,298,957	+				-1.9
2,298,957	+				-1.6
2,298,958	-		Pf1N1B4_2012	0.10	-0.0
2,298,958	-		Pf1N1B4_2012	0.10	-0.0
2,298,961	+		Pf1N1B4_2012	0.10	-0.0
2,298,961	+		Pf1N1B4_2012	0.10	-0.0
2,298,961	+		Pf1N1B4_2012	0.10	-0.0
2,298,961	+		Pf1N1B4_2012	0.10	-0.0
2,298,961	+		Pf1N1B4_2012	0.10	-0.0
2,298,961	+		Pf1N1B4_2012	0.10	-0.0
2,298,962	-		Pf1N1B4_2012	0.11	-0.3
2,298,962	-		Pf1N1B4_2012	0.11	-0.9
2,298,962	-		Pf1N1B4_2012	0.11	+1.0
2,298,962	-		Pf1N1B4_2012	0.11	-0.0
2,298,962	-		Pf1N1B4_2012	0.11	-0.0
2,298,988	+		Pf1N1B4_2012	0.14	-0.0
2,298,989	-		Pf1N1B4_2012	0.14	-0.0
2,298,990	+		Pf1N1B4_2012	0.14	-0.0
2,298,990	+		Pf1N1B4_2012	0.14	-1.1
2,298,990	+		Pf1N1B4_2012	0.14	-0.0
2,298,991	-		Pf1N1B4_2012	0.14	-1.0
2,298,991	-		Pf1N1B4_2012	0.14	-2.1
2,298,991	-		Pf1N1B4_2012	0.14	-2.0
2,298,991	-		Pf1N1B4_2012	0.14	-0.0
2,298,991	-		Pf1N1B4_2012	0.14	-2.2
2,299,012	-		Pf1N1B4_2012	0.17	-0.0
2,299,082	-		Pf1N1B4_2012	0.26	-0.0
2,299,249	+		Pf1N1B4_2012	0.47	-0.2
2,299,249	+		Pf1N1B4_2012	0.47	-0.0
2,299,250	-		Pf1N1B4_2012	0.47	-0.0
2,299,321	+		Pf1N1B4_2012	0.56	-0.0
2,299,321	+		Pf1N1B4_2012	0.56	-0.0
2,299,321	+		Pf1N1B4_2012	0.56	-0.0
2,299,322	-		Pf1N1B4_2012	0.57	-0.0
2,299,322	-		Pf1N1B4_2012	0.57	-0.0
2,299,322	-		Pf1N1B4_2012	0.57	-0.0
2,299,352	+		Pf1N1B4_2012	0.60	-3.5
2,299,372	+		Pf1N1B4_2012	0.63	-0.0
2,299,372	+		Pf1N1B4_2012	0.63	-0.0
2,299,372	+		Pf1N1B4_2012	0.63	-1.4
2,299,372	+		Pf1N1B4_2012	0.63	-0.0
2,299,372	+		Pf1N1B4_2012	0.63	-0.0
2,299,372	+		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-2.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0
2,299,373	-		Pf1N1B4_2012	0.63	-0.0