Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3329

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
3,980,997	+		Psyr_3328	0.58	-3.6
3,980,997	+		Psyr_3328	0.58	-0.1
3,980,998	-		Psyr_3328	0.59	+1.3
3,980,998	-		Psyr_3328	0.59	+2.1
3,980,998	-		Psyr_3328	0.59	+0.7
3,981,029	-		Psyr_3328	0.60	-0.5
3,981,029	-		Psyr_3328	0.60	+0.9
3,981,029	-		Psyr_3328	0.60	+1.6
3,981,144	+		Psyr_3328	0.67	-1.7
3,981,144	+		Psyr_3328	0.67	+3.1
3,981,144	+		Psyr_3328	0.67	+0.7
3,981,144	+		Psyr_3328	0.67	-2.2
3,981,144	+		Psyr_3328	0.67	+0.6
3,981,144	+		Psyr_3328	0.67	+0.8
3,981,144	+		Psyr_3328	0.67	+1.7
3,981,144	+		Psyr_3328	0.67	-2.2
3,981,144	+		Psyr_3328	0.67	-1.5
3,981,144	+		Psyr_3328	0.67	-1.8
3,981,145	-		Psyr_3328	0.67	+0.8
3,981,145	-		Psyr_3328	0.67	-2.2
3,981,145	-		Psyr_3328	0.67	+1.4
3,981,145	-		Psyr_3328	0.67	-0.4
3,981,145	-		Psyr_3328	0.67	-0.4
3,981,145	-		Psyr_3328	0.67	-2.2
3,981,146	+		Psyr_3328	0.68	-3.2
3,981,146	+		Psyr_3328	0.68	-2.1
3,981,147	-		Psyr_3328	0.68	+1.2
3,981,147	-		Psyr_3328	0.68	-2.7
3,981,147	-		Psyr_3328	0.68	-0.1
3,981,147	-		Psyr_3328	0.68	+1.6
3,981,178	+		Psyr_3328	0.69	+2.2
3,981,178	+		Psyr_3328	0.69	-1.4
3,981,178	+		Psyr_3328	0.69	-1.1
3,981,179	-		Psyr_3328	0.70	-3.4
3,981,187	+		Psyr_3328	0.70	-3.3
3,981,262	+		Psyr_3328	0.75	-2.8
3,981,262	+		Psyr_3328	0.75	-0.6
3,981,263	-		Psyr_3328	0.75	-0.8
3,981,263	-		Psyr_3328	0.75	+1.5
3,981,263	-		Psyr_3328	0.75	+1.9
3,981,263	-		Psyr_3328	0.75	-0.3
3,981,540	-				+0.6
3,981,540	-				-3.9
3,981,575	+				+0.8
3,981,576	-				+0.9
3,981,576	-				-2.6
3,981,608	+				-0.4
3,981,609	-				-0.8
3,981,641	+				-0.8
3,981,642	-				+0.8
3,981,642	-				-1.9
3,981,642	-				+0.1
3,981,669	+				+0.5
3,981,670	-				-0.5
3,981,707	+				-0.4
3,981,732	-				+1.4
3,981,841	+				-2.8
3,981,842	-				-2.0
3,981,956	-				-2.2
3,981,956	-				-1.1
3,981,957	+				-2.2
3,981,958	-				-2.4
3,982,010	+				-0.5
3,982,010	+				+0.5
3,982,010	+				-1.4
3,982,011	-				-0.5
3,982,011	-				-0.8
3,982,044	-				+2.1
3,982,282	+		Psyr_3329	0.14	-1.4
3,982,283	-		Psyr_3329	0.14	-0.7
3,982,283	-		Psyr_3329	0.14	+0.4
3,982,309	-		Psyr_3329	0.15	+0.4
3,982,309	-		Psyr_3329	0.15	+1.8
3,982,373	+		Psyr_3329	0.18	-0.0
3,982,374	-		Psyr_3329	0.18	+2.7
3,982,496	+		Psyr_3329	0.24	-3.1
3,982,496	+		Psyr_3329	0.24	-1.2
3,982,497	-		Psyr_3329	0.24	-1.9
3,982,497	-		Psyr_3329	0.24	+3.1
3,982,502	+		Psyr_3329	0.24	+2.2
3,982,634	+		Psyr_3329	0.30	-0.9
3,982,634	+		Psyr_3329	0.30	-2.3
3,982,635	-		Psyr_3329	0.30	-0.6
3,982,751	+		Psyr_3329	0.35	+1.4
3,982,751	+		Psyr_3329	0.35	+1.5
3,982,855	+		Psyr_3329	0.40	-0.3
3,982,855	+		Psyr_3329	0.40	-1.4
3,982,856	-		Psyr_3329	0.40	+0.4
3,982,856	-		Psyr_3329	0.40	-1.1
3,982,875	+		Psyr_3329	0.41	+0.6
3,982,876	-		Psyr_3329	0.41	+1.7
3,983,078	+		Psyr_3329	0.50	-1.5
3,983,079	-		Psyr_3329	0.50	+1.9
3,983,193	+		Psyr_3329	0.56	+0.1
3,983,214	+		Psyr_3329	0.56	-1.6
3,983,214	+		Psyr_3329	0.56	-1.9
3,983,214	+		Psyr_3329	0.56	+1.5
3,983,214	+		Psyr_3329	0.56	-2.5
3,983,214	+		Psyr_3329	0.56	-0.9
3,983,214	+		Psyr_3329	0.56	+1.2
3,983,214	+		Psyr_3329	0.56	-3.0
3,983,214	+		Psyr_3329	0.56	+1.0
3,983,214	+		Psyr_3329	0.56	+0.7
3,983,214	+		Psyr_3329	0.56	-2.2
3,983,214	+		Psyr_3329	0.56	+2.5
3,983,214	+		Psyr_3329	0.56	-0.8
3,983,214	+		Psyr_3329	0.56	-1.1
3,983,215	-		Psyr_3329	0.57	-2.0
3,983,215	-		Psyr_3329	0.57	+2.8
3,983,215	-		Psyr_3329	0.57	-1.4
3,983,259	+		Psyr_3329	0.59	+0.6
3,983,259	+		Psyr_3329	0.59	-1.0
3,983,430	+		Psyr_3329	0.66	-1.6
3,983,430	+		Psyr_3329	0.66	+0.6
3,983,431	-		Psyr_3329	0.66	-3.1
3,983,431	-		Psyr_3329	0.66	+0.5
3,983,431	-		Psyr_3329	0.66	+0.4
3,983,433	+		Psyr_3329	0.66	+2.2
3,983,433	+		Psyr_3329	0.66	+1.1
3,983,434	-		Psyr_3329	0.66	-0.7
3,983,434	-		Psyr_3329	0.66	+1.9
3,983,434	-		Psyr_3329	0.66	-1.2
3,983,447	-		Psyr_3329	0.67	-3.7
3,983,465	+		Psyr_3329	0.68	+1.3
3,983,486	+		Psyr_3329	0.69	+5.7
3,983,487	-		Psyr_3329	0.69	+1.0
3,983,488	+		Psyr_3329	0.69	+2.2
3,983,488	+		Psyr_3329	0.69	+1.3
3,983,488	+		Psyr_3329	0.69	+0.5
3,983,488	+		Psyr_3329	0.69	-0.3
3,983,488	+		Psyr_3329	0.69	+0.4
3,983,488	+		Psyr_3329	0.69	+1.4
3,983,488	+		Psyr_3329	0.69	-1.8
3,983,488	+		Psyr_3329	0.69	+0.1
3,983,488	+		Psyr_3329	0.69	-0.1
3,983,488	+		Psyr_3329	0.69	-0.2
3,983,489	-		Psyr_3329	0.69	+1.1
3,983,489	-		Psyr_3329	0.69	-2.1
3,983,489	-		Psyr_3329	0.69	+1.8
3,983,489	-		Psyr_3329	0.69	-0.3
3,983,489	-		Psyr_3329	0.69	-1.3
3,983,489	-		Psyr_3329	0.69	+2.3
3,983,585	-		Psyr_3329	0.73	-0.6
3,984,019	+				-0.5
3,984,019	+				+1.0
3,984,019	+				+0.6
3,984,019	+				-2.9
3,984,019	+				-2.2
3,984,020	-				-2.2
3,984,054	+				+4.7
3,984,054	+				+0.3
3,984,054	+				-1.3
3,984,054	+				+0.5
3,984,054	+				+0.2
3,984,054	+				+0.6
3,984,054	+				-0.5
3,984,055	-				-1.2
3,984,055	-				+0.9
3,984,055	-				+1.3
3,984,055	-				-1.6
3,984,055	-				+1.4
3,984,055	-				-2.6
3,984,055	-				+1.0
3,984,078	+				-0.9
3,984,079	-				-1.3
3,984,079	-				+1.6
3,984,084	+				+0.8
3,984,084	+				-2.7
3,984,085	-				+0.1
3,984,123	+				-2.6
3,984,123	+				-0.6
3,984,123	+				-1.1
3,984,124	-				-1.1
3,984,124	-				-2.9
3,984,125	+				+0.9
3,984,125	+				-0.3
3,984,125	+				-3.0
3,984,125	+				+1.9
3,984,126	-				-1.4
3,984,126	-				-0.1
3,984,126	-				-0.3
3,984,126	-				-3.3
3,984,126	-				+0.9
3,984,246	+				-1.7
3,984,246	+				+0.5
3,984,246	+				+2.3
3,984,376	-		Psyr_3330	0.13	+1.1
3,984,493	+		Psyr_3330	0.24	+1.9
3,984,494	-		Psyr_3330	0.24	+1.5
3,984,496	+		Psyr_3330	0.25	+2.1
3,984,496	+		Psyr_3330	0.25	+2.5
3,984,496	+		Psyr_3330	0.25	+2.5
3,984,496	+		Psyr_3330	0.25	-2.0
3,984,496	+		Psyr_3330	0.25	+1.9
3,984,497	-		Psyr_3330	0.25	-1.2
3,984,497	-		Psyr_3330	0.25	-0.6
3,984,582	+		Psyr_3330	0.33	-0.7
3,984,582	+		Psyr_3330	0.33	+3.2
3,984,582	+		Psyr_3330	0.33	+0.1
3,984,582	+		Psyr_3330	0.33	+1.8
3,984,582	+		Psyr_3330	0.33	+0.1
3,984,583	-		Psyr_3330	0.33	-1.7
3,984,583	-		Psyr_3330	0.33	+2.4
3,984,718	+		Psyr_3330	0.45	-2.7
3,984,718	+		Psyr_3330	0.45	-1.9
3,984,719	-		Psyr_3330	0.45	+0.7
3,984,739	+		Psyr_3330	0.47	-2.3
3,984,740	-		Psyr_3330	0.47	-0.5
3,984,773	-		Psyr_3330	0.50	-0.1
3,984,787	+		Psyr_3330	0.52	-2.5
3,984,896	-		Psyr_3330	0.62	-0.7
3,984,896	-		Psyr_3330	0.62	+3.1
3,984,896	-		Psyr_3330	0.62	-1.1
3,985,102	+		Psyr_3330	0.81	-3.4
3,985,102	+		Psyr_3330	0.81	-2.0
3,985,102	+		Psyr_3330	0.81	+0.2
3,985,102	+		Psyr_3330	0.81	+2.7
3,985,102	+		Psyr_3330	0.81	-0.7
3,985,103	-		Psyr_3330	0.81	+0.7
3,985,115	+		Psyr_3330	0.82	-0.6
3,985,159	+		Psyr_3330	0.86	+1.2