Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2802 and DORF43823 are separated by 58 nucleotides DORF43823 and DVU2803 are separated by 68 nucleotides DVU2803 and DVU2804 are separated by 16 nucleotides
DVU2802: DVU2802 - transcriptional regulator, GntR family (TIGR), at 2,904,939 to 2,905,634
DVU2802
DORF43823: DORF43823 - no description, at 2,905,693 to 2,905,845
DORF43823
DVU2803: DVU2803 - membrane protein, putative (TIGR), at 2,905,914 to 2,907,323
DVU2803
DVU2804: DVU2804 - metallo-beta-lactamase family protein (TIGR), at 2,907,340 to 2,908,497
DVU2804
Position (kb)
2905
2906
2907
2908 Strain fitness (log2 ratio)
-1
0
1 at 2905.006 kb on + strand at 2905.014 kb on - strand, within DVU2802 at 2905.061 kb on + strand, within DVU2802 at 2905.140 kb on - strand, within DVU2802 at 2905.140 kb on - strand, within DVU2802 at 2905.142 kb on + strand, within DVU2802 at 2905.173 kb on + strand, within DVU2802 at 2905.181 kb on - strand, within DVU2802 at 2905.212 kb on + strand, within DVU2802 at 2905.212 kb on + strand, within DVU2802 at 2905.227 kb on - strand, within DVU2802 at 2905.229 kb on + strand, within DVU2802 at 2905.338 kb on - strand, within DVU2802 at 2905.368 kb on + strand, within DVU2802 at 2905.397 kb on + strand, within DVU2802 at 2905.410 kb on - strand, within DVU2802 at 2905.476 kb on + strand, within DVU2802 at 2905.484 kb on - strand, within DVU2802 at 2905.508 kb on + strand, within DVU2802 at 2905.508 kb on + strand, within DVU2802 at 2905.509 kb on + strand, within DVU2802 at 2905.691 kb on - strand at 2905.912 kb on - strand at 2905.938 kb on - strand at 2905.961 kb on + strand at 2905.994 kb on + strand at 2905.994 kb on + strand at 2906.029 kb on - strand at 2906.049 kb on + strand at 2906.079 kb on + strand, within DVU2803 at 2906.095 kb on - strand, within DVU2803 at 2906.110 kb on + strand, within DVU2803 at 2906.112 kb on + strand, within DVU2803 at 2906.126 kb on - strand, within DVU2803 at 2906.141 kb on - strand, within DVU2803 at 2906.165 kb on + strand, within DVU2803 at 2906.165 kb on + strand, within DVU2803 at 2906.173 kb on - strand, within DVU2803 at 2906.173 kb on - strand, within DVU2803 at 2906.173 kb on - strand, within DVU2803 at 2906.200 kb on - strand, within DVU2803 at 2906.224 kb on - strand, within DVU2803 at 2906.258 kb on - strand, within DVU2803 at 2906.291 kb on + strand, within DVU2803 at 2906.291 kb on + strand, within DVU2803 at 2906.299 kb on - strand, within DVU2803 at 2906.299 kb on - strand, within DVU2803 at 2906.330 kb on + strand, within DVU2803 at 2906.330 kb on + strand, within DVU2803 at 2906.338 kb on - strand, within DVU2803 at 2906.350 kb on - strand, within DVU2803 at 2906.391 kb on + strand, within DVU2803 at 2906.445 kb on - strand, within DVU2803 at 2906.464 kb on + strand, within DVU2803 at 2906.523 kb on + strand, within DVU2803 at 2906.527 kb on + strand, within DVU2803 at 2906.537 kb on + strand, within DVU2803 at 2906.537 kb on + strand, within DVU2803 at 2906.562 kb on + strand, within DVU2803 at 2906.578 kb on + strand, within DVU2803 at 2906.586 kb on + strand, within DVU2803 at 2906.612 kb on + strand, within DVU2803 at 2906.620 kb on - strand, within DVU2803 at 2906.620 kb on - strand, within DVU2803 at 2906.665 kb on - strand, within DVU2803 at 2906.693 kb on + strand, within DVU2803 at 2906.778 kb on + strand, within DVU2803 at 2906.783 kb on + strand, within DVU2803 at 2906.987 kb on + strand, within DVU2803 at 2907.017 kb on + strand, within DVU2803 at 2907.033 kb on + strand, within DVU2803 at 2907.033 kb on + strand, within DVU2803 at 2907.054 kb on + strand, within DVU2803 at 2907.062 kb on - strand, within DVU2803 at 2907.095 kb on - strand, within DVU2803 at 2907.134 kb on + strand, within DVU2803 at 2907.134 kb on + strand, within DVU2803 at 2907.269 kb on - strand at 2907.295 kb on - strand at 2907.325 kb on + strand at 2907.421 kb on + strand at 2907.453 kb on - strand at 2907.453 kb on - strand at 2907.467 kb on - strand, within DVU2804 at 2907.467 kb on - strand, within DVU2804 at 2907.494 kb on - strand, within DVU2804 at 2907.494 kb on - strand, within DVU2804 at 2907.511 kb on - strand, within DVU2804 at 2907.633 kb on + strand, within DVU2804 at 2907.633 kb on + strand, within DVU2804 at 2907.633 kb on + strand, within DVU2804 at 2907.639 kb on + strand, within DVU2804 at 2907.639 kb on + strand, within DVU2804 at 2907.639 kb on + strand, within DVU2804 at 2907.647 kb on - strand, within DVU2804 at 2907.647 kb on - strand, within DVU2804 at 2907.648 kb on - strand, within DVU2804 at 2907.730 kb on + strand, within DVU2804 at 2907.916 kb on - strand, within DVU2804 at 2907.930 kb on + strand, within DVU2804 at 2907.930 kb on + strand, within DVU2804 at 2907.981 kb on - strand, within DVU2804 at 2908.279 kb on + strand, within DVU2804
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 2,905,006 + +0.6 2,905,014 - DVU2802 0.11 +0.1 2,905,061 + DVU2802 0.18 -0.7 2,905,140 - DVU2802 0.29 +0.2 2,905,140 - DVU2802 0.29 +0.4 2,905,142 + DVU2802 0.29 +0.8 2,905,173 + DVU2802 0.34 +0.2 2,905,181 - DVU2802 0.35 +0.2 2,905,212 + DVU2802 0.39 +0.7 2,905,212 + DVU2802 0.39 +0.8 2,905,227 - DVU2802 0.41 +0.3 2,905,229 + DVU2802 0.42 +0.3 2,905,338 - DVU2802 0.57 +0.7 2,905,368 + DVU2802 0.62 -0.2 2,905,397 + DVU2802 0.66 +0.2 2,905,410 - DVU2802 0.68 +0.9 2,905,476 + DVU2802 0.77 +0.3 2,905,484 - DVU2802 0.78 +0.2 2,905,508 + DVU2802 0.82 +0.3 2,905,508 + DVU2802 0.82 +0.3 2,905,509 + DVU2802 0.82 -0.4 2,905,691 - +0.4 2,905,912 - +0.1 2,905,938 - +0.8 2,905,961 + +0.8 2,905,994 + -0.4 2,905,994 + +0.3 2,906,029 - +0.7 2,906,049 + +0.7 2,906,079 + DVU2803 0.12 +0.6 2,906,095 - DVU2803 0.13 -0.2 2,906,110 + DVU2803 0.14 -0.0 2,906,112 + DVU2803 0.14 +0.7 2,906,126 - DVU2803 0.15 +0.8 2,906,141 - DVU2803 0.16 -0.4 2,906,165 + DVU2803 0.18 +0.6 2,906,165 + DVU2803 0.18 +0.5 2,906,173 - DVU2803 0.18 -0.3 2,906,173 - DVU2803 0.18 -0.3 2,906,173 - DVU2803 0.18 +0.1 2,906,200 - DVU2803 0.20 +0.4 2,906,224 - DVU2803 0.22 +0.6 2,906,258 - DVU2803 0.24 +0.7 2,906,291 + DVU2803 0.27 -0.3 2,906,291 + DVU2803 0.27 -0.3 2,906,299 - DVU2803 0.27 +0.3 2,906,299 - DVU2803 0.27 -0.4 2,906,330 + DVU2803 0.30 +0.5 2,906,330 + DVU2803 0.30 -0.3 2,906,338 - DVU2803 0.30 +0.2 2,906,350 - DVU2803 0.31 +0.1 2,906,391 + DVU2803 0.34 -1.1 2,906,445 - DVU2803 0.38 +0.4 2,906,464 + DVU2803 0.39 +1.4 2,906,523 + DVU2803 0.43 +0.4 2,906,527 + DVU2803 0.43 +0.4 2,906,537 + DVU2803 0.44 +0.9 2,906,537 + DVU2803 0.44 -0.4 2,906,562 + DVU2803 0.46 -0.6 2,906,578 + DVU2803 0.47 +0.6 2,906,586 + DVU2803 0.48 +0.9 2,906,612 + DVU2803 0.50 -0.5 2,906,620 - DVU2803 0.50 -0.7 2,906,620 - DVU2803 0.50 +0.3 2,906,665 - DVU2803 0.53 +0.3 2,906,693 + DVU2803 0.55 +0.6 2,906,778 + DVU2803 0.61 +0.5 2,906,783 + DVU2803 0.62 -1.2 2,906,987 + DVU2803 0.76 -0.5 2,907,017 + DVU2803 0.78 +0.4 2,907,033 + DVU2803 0.79 +0.1 2,907,033 + DVU2803 0.79 +0.6 2,907,054 + DVU2803 0.81 -0.6 2,907,062 - DVU2803 0.81 -0.9 2,907,095 - DVU2803 0.84 +0.6 2,907,134 + DVU2803 0.87 +0.4 2,907,134 + DVU2803 0.87 -1.4 2,907,269 - -0.0 2,907,295 - +0.5 2,907,325 + -0.2 2,907,421 + +0.4 2,907,453 - -0.0 2,907,453 - -0.1 2,907,467 - DVU2804 0.11 +0.3 2,907,467 - DVU2804 0.11 -0.1 2,907,494 - DVU2804 0.13 +0.4 2,907,494 - DVU2804 0.13 +0.2 2,907,511 - DVU2804 0.15 +0.5 2,907,633 + DVU2804 0.25 -0.3 2,907,633 + DVU2804 0.25 +0.0 2,907,633 + DVU2804 0.25 +0.3 2,907,639 + DVU2804 0.26 +0.1 2,907,639 + DVU2804 0.26 +0.5 2,907,639 + DVU2804 0.26 +0.6 2,907,647 - DVU2804 0.27 -0.2 2,907,647 - DVU2804 0.27 -0.2 2,907,648 - DVU2804 0.27 +0.2 2,907,730 + DVU2804 0.34 +0.5 2,907,916 - DVU2804 0.50 +0.1 2,907,930 + DVU2804 0.51 -0.1 2,907,930 + DVU2804 0.51 +0.8 2,907,981 - DVU2804 0.55 -0.7 2,908,279 + DVU2804 0.81 +0.2
Or see this region's nucleotide sequence