Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2803

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2802 and DORF43823 are separated by 58 nucleotidesDORF43823 and DVU2803 are separated by 68 nucleotidesDVU2803 and DVU2804 are separated by 16 nucleotides DVU2802: DVU2802 - transcriptional regulator, GntR family (TIGR), at 2,904,939 to 2,905,634 DVU2802 DORF43823: DORF43823 - no description, at 2,905,693 to 2,905,845 DORF43823 DVU2803: DVU2803 - membrane protein, putative (TIGR), at 2,905,914 to 2,907,323 DVU2803 DVU2804: DVU2804 - metallo-beta-lactamase family protein (TIGR), at 2,907,340 to 2,908,497 DVU2804 Position (kb) 2905 2906 2907 2908Strain fitness (log2 ratio) -1 0 1at 2905.006 kb on + strandat 2905.014 kb on - strand, within DVU2802at 2905.061 kb on + strand, within DVU2802at 2905.140 kb on - strand, within DVU2802at 2905.140 kb on - strand, within DVU2802at 2905.142 kb on + strand, within DVU2802at 2905.173 kb on + strand, within DVU2802at 2905.181 kb on - strand, within DVU2802at 2905.212 kb on + strand, within DVU2802at 2905.212 kb on + strand, within DVU2802at 2905.227 kb on - strand, within DVU2802at 2905.229 kb on + strand, within DVU2802at 2905.338 kb on - strand, within DVU2802at 2905.368 kb on + strand, within DVU2802at 2905.397 kb on + strand, within DVU2802at 2905.410 kb on - strand, within DVU2802at 2905.476 kb on + strand, within DVU2802at 2905.484 kb on - strand, within DVU2802at 2905.508 kb on + strand, within DVU2802at 2905.508 kb on + strand, within DVU2802at 2905.509 kb on + strand, within DVU2802at 2905.691 kb on - strandat 2905.912 kb on - strandat 2905.938 kb on - strandat 2905.961 kb on + strandat 2905.994 kb on + strandat 2905.994 kb on + strandat 2906.029 kb on - strandat 2906.049 kb on + strandat 2906.079 kb on + strand, within DVU2803at 2906.095 kb on - strand, within DVU2803at 2906.110 kb on + strand, within DVU2803at 2906.112 kb on + strand, within DVU2803at 2906.126 kb on - strand, within DVU2803at 2906.141 kb on - strand, within DVU2803at 2906.165 kb on + strand, within DVU2803at 2906.165 kb on + strand, within DVU2803at 2906.173 kb on - strand, within DVU2803at 2906.173 kb on - strand, within DVU2803at 2906.173 kb on - strand, within DVU2803at 2906.200 kb on - strand, within DVU2803at 2906.224 kb on - strand, within DVU2803at 2906.258 kb on - strand, within DVU2803at 2906.291 kb on + strand, within DVU2803at 2906.291 kb on + strand, within DVU2803at 2906.299 kb on - strand, within DVU2803at 2906.299 kb on - strand, within DVU2803at 2906.330 kb on + strand, within DVU2803at 2906.330 kb on + strand, within DVU2803at 2906.338 kb on - strand, within DVU2803at 2906.350 kb on - strand, within DVU2803at 2906.391 kb on + strand, within DVU2803at 2906.445 kb on - strand, within DVU2803at 2906.464 kb on + strand, within DVU2803at 2906.523 kb on + strand, within DVU2803at 2906.527 kb on + strand, within DVU2803at 2906.537 kb on + strand, within DVU2803at 2906.537 kb on + strand, within DVU2803at 2906.562 kb on + strand, within DVU2803at 2906.578 kb on + strand, within DVU2803at 2906.586 kb on + strand, within DVU2803at 2906.612 kb on + strand, within DVU2803at 2906.620 kb on - strand, within DVU2803at 2906.620 kb on - strand, within DVU2803at 2906.665 kb on - strand, within DVU2803at 2906.693 kb on + strand, within DVU2803at 2906.778 kb on + strand, within DVU2803at 2906.783 kb on + strand, within DVU2803at 2906.987 kb on + strand, within DVU2803at 2907.017 kb on + strand, within DVU2803at 2907.033 kb on + strand, within DVU2803at 2907.033 kb on + strand, within DVU2803at 2907.054 kb on + strand, within DVU2803at 2907.062 kb on - strand, within DVU2803at 2907.095 kb on - strand, within DVU2803at 2907.134 kb on + strand, within DVU2803at 2907.134 kb on + strand, within DVU2803at 2907.269 kb on - strandat 2907.295 kb on - strandat 2907.325 kb on + strandat 2907.421 kb on + strandat 2907.453 kb on - strandat 2907.453 kb on - strandat 2907.467 kb on - strand, within DVU2804at 2907.467 kb on - strand, within DVU2804at 2907.494 kb on - strand, within DVU2804at 2907.494 kb on - strand, within DVU2804at 2907.511 kb on - strand, within DVU2804at 2907.633 kb on + strand, within DVU2804at 2907.633 kb on + strand, within DVU2804at 2907.633 kb on + strand, within DVU2804at 2907.639 kb on + strand, within DVU2804at 2907.639 kb on + strand, within DVU2804at 2907.639 kb on + strand, within DVU2804at 2907.647 kb on - strand, within DVU2804at 2907.647 kb on - strand, within DVU2804at 2907.648 kb on - strand, within DVU2804at 2907.730 kb on + strand, within DVU2804at 2907.916 kb on - strand, within DVU2804at 2907.930 kb on + strand, within DVU2804at 2907.930 kb on + strand, within DVU2804at 2907.981 kb on - strand, within DVU2804at 2908.279 kb on + strand, within DVU2804

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM)
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2,905,006 + +0.6
2,905,014 - DVU2802 0.11 +0.1
2,905,061 + DVU2802 0.18 -0.7
2,905,140 - DVU2802 0.29 +0.2
2,905,140 - DVU2802 0.29 +0.4
2,905,142 + DVU2802 0.29 +0.8
2,905,173 + DVU2802 0.34 +0.2
2,905,181 - DVU2802 0.35 +0.2
2,905,212 + DVU2802 0.39 +0.7
2,905,212 + DVU2802 0.39 +0.8
2,905,227 - DVU2802 0.41 +0.3
2,905,229 + DVU2802 0.42 +0.3
2,905,338 - DVU2802 0.57 +0.7
2,905,368 + DVU2802 0.62 -0.2
2,905,397 + DVU2802 0.66 +0.2
2,905,410 - DVU2802 0.68 +0.9
2,905,476 + DVU2802 0.77 +0.3
2,905,484 - DVU2802 0.78 +0.2
2,905,508 + DVU2802 0.82 +0.3
2,905,508 + DVU2802 0.82 +0.3
2,905,509 + DVU2802 0.82 -0.4
2,905,691 - +0.4
2,905,912 - +0.1
2,905,938 - +0.8
2,905,961 + +0.8
2,905,994 + -0.4
2,905,994 + +0.3
2,906,029 - +0.7
2,906,049 + +0.7
2,906,079 + DVU2803 0.12 +0.6
2,906,095 - DVU2803 0.13 -0.2
2,906,110 + DVU2803 0.14 -0.0
2,906,112 + DVU2803 0.14 +0.7
2,906,126 - DVU2803 0.15 +0.8
2,906,141 - DVU2803 0.16 -0.4
2,906,165 + DVU2803 0.18 +0.6
2,906,165 + DVU2803 0.18 +0.5
2,906,173 - DVU2803 0.18 -0.3
2,906,173 - DVU2803 0.18 -0.3
2,906,173 - DVU2803 0.18 +0.1
2,906,200 - DVU2803 0.20 +0.4
2,906,224 - DVU2803 0.22 +0.6
2,906,258 - DVU2803 0.24 +0.7
2,906,291 + DVU2803 0.27 -0.3
2,906,291 + DVU2803 0.27 -0.3
2,906,299 - DVU2803 0.27 +0.3
2,906,299 - DVU2803 0.27 -0.4
2,906,330 + DVU2803 0.30 +0.5
2,906,330 + DVU2803 0.30 -0.3
2,906,338 - DVU2803 0.30 +0.2
2,906,350 - DVU2803 0.31 +0.1
2,906,391 + DVU2803 0.34 -1.1
2,906,445 - DVU2803 0.38 +0.4
2,906,464 + DVU2803 0.39 +1.4
2,906,523 + DVU2803 0.43 +0.4
2,906,527 + DVU2803 0.43 +0.4
2,906,537 + DVU2803 0.44 +0.9
2,906,537 + DVU2803 0.44 -0.4
2,906,562 + DVU2803 0.46 -0.6
2,906,578 + DVU2803 0.47 +0.6
2,906,586 + DVU2803 0.48 +0.9
2,906,612 + DVU2803 0.50 -0.5
2,906,620 - DVU2803 0.50 -0.7
2,906,620 - DVU2803 0.50 +0.3
2,906,665 - DVU2803 0.53 +0.3
2,906,693 + DVU2803 0.55 +0.6
2,906,778 + DVU2803 0.61 +0.5
2,906,783 + DVU2803 0.62 -1.2
2,906,987 + DVU2803 0.76 -0.5
2,907,017 + DVU2803 0.78 +0.4
2,907,033 + DVU2803 0.79 +0.1
2,907,033 + DVU2803 0.79 +0.6
2,907,054 + DVU2803 0.81 -0.6
2,907,062 - DVU2803 0.81 -0.9
2,907,095 - DVU2803 0.84 +0.6
2,907,134 + DVU2803 0.87 +0.4
2,907,134 + DVU2803 0.87 -1.4
2,907,269 - -0.0
2,907,295 - +0.5
2,907,325 + -0.2
2,907,421 + +0.4
2,907,453 - -0.0
2,907,453 - -0.1
2,907,467 - DVU2804 0.11 +0.3
2,907,467 - DVU2804 0.11 -0.1
2,907,494 - DVU2804 0.13 +0.4
2,907,494 - DVU2804 0.13 +0.2
2,907,511 - DVU2804 0.15 +0.5
2,907,633 + DVU2804 0.25 -0.3
2,907,633 + DVU2804 0.25 +0.0
2,907,633 + DVU2804 0.25 +0.3
2,907,639 + DVU2804 0.26 +0.1
2,907,639 + DVU2804 0.26 +0.5
2,907,639 + DVU2804 0.26 +0.6
2,907,647 - DVU2804 0.27 -0.2
2,907,647 - DVU2804 0.27 -0.2
2,907,648 - DVU2804 0.27 +0.2
2,907,730 + DVU2804 0.34 +0.5
2,907,916 - DVU2804 0.50 +0.1
2,907,930 + DVU2804 0.51 -0.1
2,907,930 + DVU2804 0.51 +0.8
2,907,981 - DVU2804 0.55 -0.7
2,908,279 + DVU2804 0.81 +0.2

Or see this region's nucleotide sequence