Strain Fitness in Marinobacter adhaerens HP15 around HP15_1731

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1730 and HP15_1731 are separated by 135 nucleotidesHP15_1731 and HP15_1732 overlap by 8 nucleotidesHP15_1732 and HP15_1733 are separated by 89 nucleotidesHP15_1733 and HP15_1734 are separated by 51 nucleotides HP15_1730: HP15_1730 - binding-protein-dependent transport systems inner membrane component, at 1,829,842 to 1,831,308 _1730 HP15_1731: HP15_1731 - conserved hypothetical protein, at 1,831,444 to 1,832,049 _1731 HP15_1732: HP15_1732 - conserved hypothetical protein, at 1,832,042 to 1,832,353 _1732 HP15_1733: HP15_1733 - conserved hypothetical protein, at 1,832,443 to 1,832,985 _1733 HP15_1734: HP15_1734 - ABC-type multidrug transport system, ATPase component, at 1,833,037 to 1,833,957 _1734 Position (kb) 1831 1832 1833Strain fitness (log2 ratio) -1 0 1at 1830.468 kb on + strand, within HP15_1730at 1830.539 kb on + strand, within HP15_1730at 1830.612 kb on - strand, within HP15_1730at 1830.807 kb on - strand, within HP15_1730at 1830.909 kb on + strand, within HP15_1730at 1830.909 kb on + strand, within HP15_1730at 1830.917 kb on - strand, within HP15_1730at 1830.917 kb on - strand, within HP15_1730at 1830.917 kb on - strand, within HP15_1730at 1830.920 kb on + strand, within HP15_1730at 1830.928 kb on - strand, within HP15_1730at 1830.961 kb on + strand, within HP15_1730at 1831.148 kb on + strand, within HP15_1730at 1831.317 kb on - strandat 1831.390 kb on - strandat 1831.840 kb on - strand, within HP15_1731at 1831.924 kb on - strand, within HP15_1731at 1831.975 kb on - strand, within HP15_1731at 1832.106 kb on + strand, within HP15_1732at 1832.183 kb on + strand, within HP15_1732at 1832.191 kb on - strand, within HP15_1732at 1832.242 kb on + strand, within HP15_1732at 1832.404 kb on + strandat 1832.495 kb on + strandat 1832.782 kb on + strand, within HP15_1733at 1832.795 kb on - strand, within HP15_1733at 1832.929 kb on - strand, within HP15_1733at 1832.963 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
1,830,468 + HP15_1730 0.43 +0.6
1,830,539 + HP15_1730 0.48 -0.9
1,830,612 - HP15_1730 0.52 +0.6
1,830,807 - HP15_1730 0.66 -0.5
1,830,909 + HP15_1730 0.73 -0.7
1,830,909 + HP15_1730 0.73 +0.8
1,830,917 - HP15_1730 0.73 +0.2
1,830,917 - HP15_1730 0.73 +0.4
1,830,917 - HP15_1730 0.73 +0.4
1,830,920 + HP15_1730 0.73 +0.2
1,830,928 - HP15_1730 0.74 +0.3
1,830,961 + HP15_1730 0.76 -0.2
1,831,148 + HP15_1730 0.89 +0.0
1,831,317 - +1.5
1,831,390 - +0.8
1,831,840 - HP15_1731 0.65 -0.2
1,831,924 - HP15_1731 0.79 -0.0
1,831,975 - HP15_1731 0.88 +1.3
1,832,106 + HP15_1732 0.21 -0.5
1,832,183 + HP15_1732 0.45 -0.0
1,832,191 - HP15_1732 0.48 +0.6
1,832,242 + HP15_1732 0.64 +0.2
1,832,404 + -1.4
1,832,495 + -0.7
1,832,782 + HP15_1733 0.62 -0.2
1,832,795 - HP15_1733 0.65 -0.7
1,832,929 - HP15_1733 0.90 +0.1
1,832,963 - -0.2

Or see this region's nucleotide sequence