Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.202.1

Experiment: Xylemvessel barcodes T0L2P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.201.1 and Xcc-8004.202.1 are separated by 10 nucleotidesXcc-8004.202.1 and Xcc-8004.203.1 overlap by 1 nucleotides Xcc-8004.201.1: Xcc-8004.201.1 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 193,971 to 194,969 Xcc-8004.201.1 Xcc-8004.202.1: Xcc-8004.202.1 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 194,980 to 195,501 Xcc-8004.202.1 Xcc-8004.203.1: Xcc-8004.203.1 - TRAP-type C4-dicarboxylate transport system, large permease component, at 195,501 to 196,784 Xcc-8004.203.1 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 194.103 kb on + strand, within Xcc-8004.201.1at 194.104 kb on - strand, within Xcc-8004.201.1at 194.181 kb on + strand, within Xcc-8004.201.1at 194.181 kb on + strand, within Xcc-8004.201.1at 194.182 kb on - strand, within Xcc-8004.201.1at 194.260 kb on - strand, within Xcc-8004.201.1at 194.260 kb on - strand, within Xcc-8004.201.1at 194.260 kb on - strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.442 kb on + strand, within Xcc-8004.201.1at 194.442 kb on + strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.689 kb on - strand, within Xcc-8004.201.1at 194.913 kb on + strandat 194.967 kb on + strandat 194.967 kb on + strandat 194.968 kb on - strandat 195.121 kb on + strand, within Xcc-8004.202.1at 195.121 kb on + strand, within Xcc-8004.202.1at 195.122 kb on - strand, within Xcc-8004.202.1at 195.122 kb on - strand, within Xcc-8004.202.1at 195.122 kb on - strand, within Xcc-8004.202.1at 195.213 kb on + strand, within Xcc-8004.202.1at 195.213 kb on + strand, within Xcc-8004.202.1at 195.213 kb on + strand, within Xcc-8004.202.1at 195.213 kb on + strand, within Xcc-8004.202.1at 195.213 kb on + strand, within Xcc-8004.202.1at 195.214 kb on - strand, within Xcc-8004.202.1at 195.214 kb on - strand, within Xcc-8004.202.1at 195.235 kb on + strand, within Xcc-8004.202.1at 195.235 kb on + strand, within Xcc-8004.202.1at 195.235 kb on + strand, within Xcc-8004.202.1at 195.235 kb on + strand, within Xcc-8004.202.1at 195.236 kb on - strand, within Xcc-8004.202.1at 195.236 kb on - strand, within Xcc-8004.202.1at 195.236 kb on - strand, within Xcc-8004.202.1at 195.403 kb on + strand, within Xcc-8004.202.1at 195.403 kb on + strand, within Xcc-8004.202.1at 195.403 kb on + strand, within Xcc-8004.202.1at 195.403 kb on + strand, within Xcc-8004.202.1at 195.404 kb on - strand, within Xcc-8004.202.1at 195.404 kb on - strand, within Xcc-8004.202.1at 195.404 kb on - strand, within Xcc-8004.202.1at 195.451 kb on + strandat 195.451 kb on + strandat 195.451 kb on + strandat 195.451 kb on + strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.452 kb on - strandat 195.564 kb on + strandat 195.564 kb on + strandat 195.564 kb on + strandat 195.600 kb on + strandat 195.600 kb on + strandat 195.600 kb on + strandat 195.600 kb on + strandat 195.601 kb on - strandat 195.683 kb on + strand, within Xcc-8004.203.1at 195.683 kb on + strand, within Xcc-8004.203.1at 195.684 kb on - strand, within Xcc-8004.203.1at 195.900 kb on + strand, within Xcc-8004.203.1at 195.900 kb on + strand, within Xcc-8004.203.1at 196.242 kb on + strand, within Xcc-8004.203.1at 196.242 kb on + strand, within Xcc-8004.203.1at 196.242 kb on + strand, within Xcc-8004.203.1at 196.242 kb on + strand, within Xcc-8004.203.1at 196.242 kb on + strand, within Xcc-8004.203.1at 196.242 kb on + strand, within Xcc-8004.203.1at 196.242 kb on + strand, within Xcc-8004.203.1at 196.242 kb on + strand, within Xcc-8004.203.1at 196.243 kb on - strand, within Xcc-8004.203.1at 196.243 kb on - strand, within Xcc-8004.203.1at 196.243 kb on - strand, within Xcc-8004.203.1at 196.243 kb on - strand, within Xcc-8004.203.1at 196.383 kb on + strand, within Xcc-8004.203.1at 196.383 kb on + strand, within Xcc-8004.203.1at 196.383 kb on + strand, within Xcc-8004.203.1at 196.384 kb on - strand, within Xcc-8004.203.1at 196.384 kb on - strand, within Xcc-8004.203.1at 196.384 kb on - strand, within Xcc-8004.203.1at 196.384 kb on - strand, within Xcc-8004.203.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4
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194,103 + Xcc-8004.201.1 0.13 -1.8
194,104 - Xcc-8004.201.1 0.13 -0.2
194,181 + Xcc-8004.201.1 0.21 -3.0
194,181 + Xcc-8004.201.1 0.21 +1.0
194,182 - Xcc-8004.201.1 0.21 -0.6
194,260 - Xcc-8004.201.1 0.29 -0.7
194,260 - Xcc-8004.201.1 0.29 +1.7
194,260 - Xcc-8004.201.1 0.29 +0.5
194,313 + Xcc-8004.201.1 0.34 +0.2
194,313 + Xcc-8004.201.1 0.34 +2.4
194,313 + Xcc-8004.201.1 0.34 +0.6
194,313 + Xcc-8004.201.1 0.34 -1.4
194,313 + Xcc-8004.201.1 0.34 -0.7
194,313 + Xcc-8004.201.1 0.34 -2.2
194,313 + Xcc-8004.201.1 0.34 -0.2
194,314 - Xcc-8004.201.1 0.34 -2.2
194,314 - Xcc-8004.201.1 0.34 +0.3
194,314 - Xcc-8004.201.1 0.34 +0.7
194,314 - Xcc-8004.201.1 0.34 +0.3
194,314 - Xcc-8004.201.1 0.34 +0.3
194,314 - Xcc-8004.201.1 0.34 +0.3
194,418 + Xcc-8004.201.1 0.45 -1.7
194,418 + Xcc-8004.201.1 0.45 -2.8
194,418 + Xcc-8004.201.1 0.45 -0.3
194,418 + Xcc-8004.201.1 0.45 -2.3
194,418 + Xcc-8004.201.1 0.45 -0.5
194,418 + Xcc-8004.201.1 0.45 +0.1
194,418 + Xcc-8004.201.1 0.45 -1.2
194,418 + Xcc-8004.201.1 0.45 +0.3
194,419 - Xcc-8004.201.1 0.45 -2.3
194,419 - Xcc-8004.201.1 0.45 -2.5
194,419 - Xcc-8004.201.1 0.45 -0.5
194,419 - Xcc-8004.201.1 0.45 -1.3
194,419 - Xcc-8004.201.1 0.45 -0.7
194,442 + Xcc-8004.201.1 0.47 +1.4
194,442 + Xcc-8004.201.1 0.47 +0.5
194,443 - Xcc-8004.201.1 0.47 -1.4
194,443 - Xcc-8004.201.1 0.47 +0.2
194,443 - Xcc-8004.201.1 0.47 +2.8
194,443 - Xcc-8004.201.1 0.47 -2.0
194,443 - Xcc-8004.201.1 0.47 +0.8
194,443 - Xcc-8004.201.1 0.47 +1.8
194,443 - Xcc-8004.201.1 0.47 -3.3
194,443 - Xcc-8004.201.1 0.47 +0.2
194,443 - Xcc-8004.201.1 0.47 -1.3
194,689 - Xcc-8004.201.1 0.72 +1.5
194,913 + -1.5
194,967 + -0.3
194,967 + -0.3
194,968 - -1.6
195,121 + Xcc-8004.202.1 0.27 -2.3
195,121 + Xcc-8004.202.1 0.27 -0.6
195,122 - Xcc-8004.202.1 0.27 +0.4
195,122 - Xcc-8004.202.1 0.27 +0.1
195,122 - Xcc-8004.202.1 0.27 -0.0
195,213 + Xcc-8004.202.1 0.45 -3.0
195,213 + Xcc-8004.202.1 0.45 +0.3
195,213 + Xcc-8004.202.1 0.45 -0.9
195,213 + Xcc-8004.202.1 0.45 +0.3
195,213 + Xcc-8004.202.1 0.45 -0.7
195,214 - Xcc-8004.202.1 0.45 +1.3
195,214 - Xcc-8004.202.1 0.45 +0.9
195,235 + Xcc-8004.202.1 0.49 -0.1
195,235 + Xcc-8004.202.1 0.49 -2.3
195,235 + Xcc-8004.202.1 0.49 +0.1
195,235 + Xcc-8004.202.1 0.49 -0.0
195,236 - Xcc-8004.202.1 0.49 -1.0
195,236 - Xcc-8004.202.1 0.49 +0.1
195,236 - Xcc-8004.202.1 0.49 -0.4
195,403 + Xcc-8004.202.1 0.81 -1.9
195,403 + Xcc-8004.202.1 0.81 +0.2
195,403 + Xcc-8004.202.1 0.81 +0.4
195,403 + Xcc-8004.202.1 0.81 +1.3
195,404 - Xcc-8004.202.1 0.81 -1.0
195,404 - Xcc-8004.202.1 0.81 +1.4
195,404 - Xcc-8004.202.1 0.81 -1.3
195,451 + -1.0
195,451 + -0.8
195,451 + +0.0
195,451 + +0.2
195,452 - +1.6
195,452 - +1.8
195,452 - -2.8
195,452 - +0.3
195,452 - +1.1
195,452 - +0.8
195,452 - -0.9
195,452 - +1.3
195,452 - -1.2
195,452 - +0.5
195,452 - +2.1
195,564 + -0.0
195,564 + -0.2
195,564 + -2.3
195,600 + +0.3
195,600 + -1.7
195,600 + -0.0
195,600 + +0.3
195,601 - -0.7
195,683 + Xcc-8004.203.1 0.14 -0.2
195,683 + Xcc-8004.203.1 0.14 +0.7
195,684 - Xcc-8004.203.1 0.14 -2.0
195,900 + Xcc-8004.203.1 0.31 -2.3
195,900 + Xcc-8004.203.1 0.31 +4.4
196,242 + Xcc-8004.203.1 0.58 -0.9
196,242 + Xcc-8004.203.1 0.58 -2.2
196,242 + Xcc-8004.203.1 0.58 -0.6
196,242 + Xcc-8004.203.1 0.58 -0.2
196,242 + Xcc-8004.203.1 0.58 -1.5
196,242 + Xcc-8004.203.1 0.58 +2.1
196,242 + Xcc-8004.203.1 0.58 +1.3
196,242 + Xcc-8004.203.1 0.58 +2.3
196,243 - Xcc-8004.203.1 0.58 -0.2
196,243 - Xcc-8004.203.1 0.58 -1.4
196,243 - Xcc-8004.203.1 0.58 -2.4
196,243 - Xcc-8004.203.1 0.58 -0.0
196,383 + Xcc-8004.203.1 0.69 -0.3
196,383 + Xcc-8004.203.1 0.69 -0.9
196,383 + Xcc-8004.203.1 0.69 +0.6
196,384 - Xcc-8004.203.1 0.69 -0.4
196,384 - Xcc-8004.203.1 0.69 -0.4
196,384 - Xcc-8004.203.1 0.69 -0.1
196,384 - Xcc-8004.203.1 0.69 -0.5

Or see this region's nucleotide sequence