Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1748.1 and Xcc-8004.1749.1 are separated by 281 nucleotides Xcc-8004.1749.1 and Xcc-8004.1750.1 are separated by 127 nucleotides Xcc-8004.1750.1 and Xcc-8004.1751.1 are separated by 161 nucleotides
Xcc-8004.1748.1: Xcc-8004.1748.1 - hypothetical protein, at 1,680,183 to 1,680,278
Xcc-8004.1748.1
Xcc-8004.1749.1: Xcc-8004.1749.1 - FIG01212324: hypothetical protein, at 1,680,560 to 1,680,775
Xcc-8004.1749.1
Xcc-8004.1750.1: Xcc-8004.1750.1 - DUF819 domain-containing protein, at 1,680,903 to 1,682,291
Xcc-8004.1750.1
Xcc-8004.1751.1: Xcc-8004.1751.1 - phospholipase A1, at 1,682,453 to 1,683,649
Xcc-8004.1751.1
Position (kb) 1680
1681
1682
1683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1679.912 kb on + strand at 1679.913 kb on - strand at 1680.039 kb on - strand at 1680.039 kb on - strand at 1680.039 kb on - strand at 1680.057 kb on + strand at 1680.223 kb on + strand, within Xcc-8004.1748.1 at 1680.223 kb on + strand, within Xcc-8004.1748.1 at 1680.223 kb on + strand, within Xcc-8004.1748.1 at 1680.223 kb on + strand, within Xcc-8004.1748.1 at 1680.224 kb on - strand, within Xcc-8004.1748.1 at 1680.224 kb on - strand, within Xcc-8004.1748.1 at 1680.224 kb on - strand, within Xcc-8004.1748.1 at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.275 kb on - strand at 1680.275 kb on - strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.317 kb on + strand at 1680.317 kb on + strand at 1680.317 kb on + strand at 1680.318 kb on - strand at 1680.318 kb on - strand at 1680.344 kb on - strand at 1680.344 kb on - strand at 1680.459 kb on + strand at 1680.459 kb on + strand at 1680.459 kb on + strand at 1680.459 kb on + strand at 1680.460 kb on - strand at 1680.460 kb on - strand at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.587 kb on - strand, within Xcc-8004.1749.1 at 1680.587 kb on - strand, within Xcc-8004.1749.1 at 1680.587 kb on - strand, within Xcc-8004.1749.1 at 1680.645 kb on - strand, within Xcc-8004.1749.1 at 1680.768 kb on - strand at 1680.970 kb on + strand at 1681.161 kb on + strand, within Xcc-8004.1750.1 at 1681.161 kb on + strand, within Xcc-8004.1750.1 at 1681.161 kb on + strand, within Xcc-8004.1750.1 at 1681.162 kb on - strand, within Xcc-8004.1750.1 at 1681.162 kb on - strand, within Xcc-8004.1750.1 at 1681.191 kb on + strand, within Xcc-8004.1750.1 at 1681.191 kb on + strand, within Xcc-8004.1750.1 at 1681.192 kb on - strand, within Xcc-8004.1750.1 at 1681.192 kb on - strand, within Xcc-8004.1750.1 at 1681.192 kb on - strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.210 kb on - strand, within Xcc-8004.1750.1 at 1681.210 kb on - strand, within Xcc-8004.1750.1 at 1681.210 kb on - strand, within Xcc-8004.1750.1 at 1681.220 kb on - strand, within Xcc-8004.1750.1 at 1681.251 kb on + strand, within Xcc-8004.1750.1 at 1681.251 kb on + strand, within Xcc-8004.1750.1 at 1681.251 kb on + strand, within Xcc-8004.1750.1 at 1681.251 kb on + strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.359 kb on + strand, within Xcc-8004.1750.1 at 1681.359 kb on + strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.522 kb on + strand, within Xcc-8004.1750.1 at 1681.522 kb on + strand, within Xcc-8004.1750.1 at 1681.523 kb on - strand, within Xcc-8004.1750.1 at 1681.581 kb on + strand, within Xcc-8004.1750.1 at 1681.582 kb on - strand, within Xcc-8004.1750.1 at 1681.582 kb on - strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.739 kb on - strand, within Xcc-8004.1750.1 at 1681.739 kb on - strand, within Xcc-8004.1750.1 at 1681.739 kb on - strand, within Xcc-8004.1750.1 at 1681.894 kb on + strand, within Xcc-8004.1750.1 at 1681.895 kb on - strand, within Xcc-8004.1750.1 at 1681.895 kb on - strand, within Xcc-8004.1750.1 at 1681.963 kb on - strand, within Xcc-8004.1750.1 at 1681.963 kb on - strand, within Xcc-8004.1750.1 at 1681.963 kb on - strand, within Xcc-8004.1750.1 at 1682.109 kb on + strand, within Xcc-8004.1750.1 at 1682.109 kb on + strand, within Xcc-8004.1750.1 at 1682.109 kb on + strand, within Xcc-8004.1750.1 at 1682.223 kb on + strand at 1682.223 kb on + strand at 1682.224 kb on - strand at 1682.224 kb on - strand at 1682.238 kb on + strand at 1682.238 kb on + strand at 1682.239 kb on - strand at 1682.247 kb on + strand at 1682.247 kb on + strand at 1682.247 kb on + strand at 1682.247 kb on + strand at 1682.247 kb on + strand at 1682.261 kb on + strand at 1682.261 kb on + strand at 1682.262 kb on - strand at 1682.368 kb on + strand at 1682.368 kb on + strand at 1682.454 kb on + strand at 1682.454 kb on + strand at 1683.045 kb on + strand, within Xcc-8004.1751.1 at 1683.072 kb on + strand, within Xcc-8004.1751.1 at 1683.141 kb on + strand, within Xcc-8004.1751.1 at 1683.141 kb on + strand, within Xcc-8004.1751.1 at 1683.142 kb on - strand, within Xcc-8004.1751.1 at 1683.142 kb on - strand, within Xcc-8004.1751.1 at 1683.142 kb on - strand, within Xcc-8004.1751.1 at 1683.273 kb on + strand, within Xcc-8004.1751.1 at 1683.273 kb on + strand, within Xcc-8004.1751.1 at 1683.273 kb on + strand, within Xcc-8004.1751.1 at 1683.274 kb on - strand, within Xcc-8004.1751.1 at 1683.274 kb on - strand, within Xcc-8004.1751.1 at 1683.274 kb on - strand, within Xcc-8004.1751.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 1,679,912 + -0.3 1,679,913 - -0.1 1,680,039 - +0.7 1,680,039 - -1.1 1,680,039 - +0.9 1,680,057 + +0.4 1,680,223 + Xcc-8004.1748.1 0.42 -3.0 1,680,223 + Xcc-8004.1748.1 0.42 +0.2 1,680,223 + Xcc-8004.1748.1 0.42 -1.6 1,680,223 + Xcc-8004.1748.1 0.42 +1.5 1,680,224 - Xcc-8004.1748.1 0.43 -0.5 1,680,224 - Xcc-8004.1748.1 0.43 +0.1 1,680,224 - Xcc-8004.1748.1 0.43 +1.0 1,680,274 + -1.4 1,680,274 + -0.0 1,680,274 + -2.3 1,680,274 + -0.9 1,680,274 + +1.8 1,680,274 + +0.6 1,680,275 - -1.3 1,680,275 - -1.8 1,680,301 + -0.6 1,680,301 + -2.7 1,680,301 + -1.5 1,680,301 + +0.1 1,680,301 + +1.4 1,680,301 + -1.5 1,680,301 + -0.5 1,680,301 + -2.3 1,680,301 + -2.0 1,680,301 + -3.2 1,680,301 + -0.1 1,680,301 + -1.3 1,680,301 + -1.6 1,680,301 + -2.7 1,680,301 + +1.3 1,680,301 + +0.1 1,680,301 + -1.9 1,680,301 + -1.6 1,680,302 - +0.8 1,680,302 - -1.7 1,680,302 - -3.1 1,680,302 - -2.9 1,680,302 - +1.1 1,680,302 - -1.4 1,680,302 - -0.2 1,680,302 - +0.5 1,680,302 - -1.5 1,680,302 - -0.1 1,680,302 - +0.4 1,680,302 - -0.1 1,680,302 - -0.9 1,680,302 - -1.5 1,680,302 - +0.7 1,680,317 + -0.3 1,680,317 + -3.6 1,680,317 + -1.4 1,680,318 - -0.3 1,680,318 - -3.4 1,680,344 - +0.7 1,680,344 - -0.0 1,680,459 + +0.5 1,680,459 + -1.3 1,680,459 + -3.5 1,680,459 + -0.7 1,680,460 - +0.9 1,680,460 - -1.2 1,680,582 + Xcc-8004.1749.1 0.10 -2.6 1,680,582 + Xcc-8004.1749.1 0.10 +0.6 1,680,582 + Xcc-8004.1749.1 0.10 -1.0 1,680,582 + Xcc-8004.1749.1 0.10 +1.3 1,680,582 + Xcc-8004.1749.1 0.10 +1.6 1,680,582 + Xcc-8004.1749.1 0.10 +0.3 1,680,582 + Xcc-8004.1749.1 0.10 -0.3 1,680,582 + Xcc-8004.1749.1 0.10 +1.5 1,680,582 + Xcc-8004.1749.1 0.10 -1.3 1,680,582 + Xcc-8004.1749.1 0.10 +0.3 1,680,582 + Xcc-8004.1749.1 0.10 -0.3 1,680,583 - Xcc-8004.1749.1 0.11 +2.1 1,680,583 - Xcc-8004.1749.1 0.11 +3.0 1,680,583 - Xcc-8004.1749.1 0.11 -3.5 1,680,583 - Xcc-8004.1749.1 0.11 -2.7 1,680,583 - Xcc-8004.1749.1 0.11 -1.4 1,680,583 - Xcc-8004.1749.1 0.11 -0.8 1,680,587 - Xcc-8004.1749.1 0.12 -2.2 1,680,587 - Xcc-8004.1749.1 0.12 -0.1 1,680,587 - Xcc-8004.1749.1 0.12 +0.6 1,680,645 - Xcc-8004.1749.1 0.39 +1.9 1,680,768 - -2.1 1,680,970 + +1.8 1,681,161 + Xcc-8004.1750.1 0.19 -2.4 1,681,161 + Xcc-8004.1750.1 0.19 -2.9 1,681,161 + Xcc-8004.1750.1 0.19 +1.5 1,681,162 - Xcc-8004.1750.1 0.19 -1.2 1,681,162 - Xcc-8004.1750.1 0.19 +0.5 1,681,191 + Xcc-8004.1750.1 0.21 +1.7 1,681,191 + Xcc-8004.1750.1 0.21 +0.8 1,681,192 - Xcc-8004.1750.1 0.21 +0.7 1,681,192 - Xcc-8004.1750.1 0.21 -1.7 1,681,192 - Xcc-8004.1750.1 0.21 +0.1 1,681,209 + Xcc-8004.1750.1 0.22 -2.6 1,681,209 + Xcc-8004.1750.1 0.22 +1.6 1,681,209 + Xcc-8004.1750.1 0.22 -2.1 1,681,209 + Xcc-8004.1750.1 0.22 -2.6 1,681,209 + Xcc-8004.1750.1 0.22 -0.9 1,681,210 - Xcc-8004.1750.1 0.22 -0.3 1,681,210 - Xcc-8004.1750.1 0.22 +0.6 1,681,210 - Xcc-8004.1750.1 0.22 -2.6 1,681,220 - Xcc-8004.1750.1 0.23 +0.0 1,681,251 + Xcc-8004.1750.1 0.25 +1.3 1,681,251 + Xcc-8004.1750.1 0.25 -0.7 1,681,251 + Xcc-8004.1750.1 0.25 -0.9 1,681,251 + Xcc-8004.1750.1 0.25 -0.2 1,681,252 - Xcc-8004.1750.1 0.25 -1.5 1,681,252 - Xcc-8004.1750.1 0.25 +1.8 1,681,252 - Xcc-8004.1750.1 0.25 -1.6 1,681,252 - Xcc-8004.1750.1 0.25 -1.6 1,681,252 - Xcc-8004.1750.1 0.25 +0.8 1,681,252 - Xcc-8004.1750.1 0.25 -2.1 1,681,252 - Xcc-8004.1750.1 0.25 -0.9 1,681,359 + Xcc-8004.1750.1 0.33 -0.3 1,681,359 + Xcc-8004.1750.1 0.33 -2.5 1,681,360 - Xcc-8004.1750.1 0.33 +2.0 1,681,360 - Xcc-8004.1750.1 0.33 +2.3 1,681,360 - Xcc-8004.1750.1 0.33 +4.1 1,681,360 - Xcc-8004.1750.1 0.33 +1.3 1,681,360 - Xcc-8004.1750.1 0.33 +0.8 1,681,360 - Xcc-8004.1750.1 0.33 -1.0 1,681,522 + Xcc-8004.1750.1 0.45 -0.0 1,681,522 + Xcc-8004.1750.1 0.45 +0.9 1,681,523 - Xcc-8004.1750.1 0.45 +1.8 1,681,581 + Xcc-8004.1750.1 0.49 -0.5 1,681,582 - Xcc-8004.1750.1 0.49 +0.7 1,681,582 - Xcc-8004.1750.1 0.49 +1.2 1,681,738 + Xcc-8004.1750.1 0.60 +0.1 1,681,738 + Xcc-8004.1750.1 0.60 -2.1 1,681,738 + Xcc-8004.1750.1 0.60 -1.7 1,681,738 + Xcc-8004.1750.1 0.60 -1.1 1,681,738 + Xcc-8004.1750.1 0.60 -1.6 1,681,739 - Xcc-8004.1750.1 0.60 +0.1 1,681,739 - Xcc-8004.1750.1 0.60 +0.9 1,681,739 - Xcc-8004.1750.1 0.60 +1.1 1,681,894 + Xcc-8004.1750.1 0.71 -0.4 1,681,895 - Xcc-8004.1750.1 0.71 +0.3 1,681,895 - Xcc-8004.1750.1 0.71 -0.8 1,681,963 - Xcc-8004.1750.1 0.76 +0.2 1,681,963 - Xcc-8004.1750.1 0.76 +0.2 1,681,963 - Xcc-8004.1750.1 0.76 -2.2 1,682,109 + Xcc-8004.1750.1 0.87 -1.2 1,682,109 + Xcc-8004.1750.1 0.87 +0.4 1,682,109 + Xcc-8004.1750.1 0.87 +1.3 1,682,223 + -1.8 1,682,223 + +2.5 1,682,224 - +0.1 1,682,224 - -0.7 1,682,238 + +1.2 1,682,238 + -0.4 1,682,239 - +0.7 1,682,247 + +0.5 1,682,247 + -0.9 1,682,247 + +0.8 1,682,247 + -0.5 1,682,247 + +1.7 1,682,261 + +2.2 1,682,261 + -0.5 1,682,262 - -0.3 1,682,368 + +0.7 1,682,368 + +1.0 1,682,454 + +1.3 1,682,454 + +2.1 1,683,045 + Xcc-8004.1751.1 0.49 -1.4 1,683,072 + Xcc-8004.1751.1 0.52 +2.2 1,683,141 + Xcc-8004.1751.1 0.57 -0.7 1,683,141 + Xcc-8004.1751.1 0.57 -1.4 1,683,142 - Xcc-8004.1751.1 0.58 -2.3 1,683,142 - Xcc-8004.1751.1 0.58 +0.1 1,683,142 - Xcc-8004.1751.1 0.58 -0.1 1,683,273 + Xcc-8004.1751.1 0.69 +0.5 1,683,273 + Xcc-8004.1751.1 0.69 -0.5 1,683,273 + Xcc-8004.1751.1 0.69 -1.0 1,683,274 - Xcc-8004.1751.1 0.69 -0.7 1,683,274 - Xcc-8004.1751.1 0.69 +0.5 1,683,274 - Xcc-8004.1751.1 0.69 -3.3
Or see this region's nucleotide sequence