Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25915 and BWI76_RS25920 are separated by 59 nucleotides BWI76_RS25920 and BWI76_RS25925 are separated by 94 nucleotides BWI76_RS25925 and BWI76_RS25930 are separated by 11 nucleotides BWI76_RS25930 and BWI76_RS25935 overlap by 14 nucleotides BWI76_RS25935 and BWI76_RS25940 overlap by 80 nucleotides BWI76_RS25940 and BWI76_RS25945 are separated by 21 nucleotides
BWI76_RS25915: BWI76_RS25915 - protein SlyX, at 5,359,169 to 5,359,387
_RS25915
BWI76_RS25920: BWI76_RS25920 - peptidylprolyl isomerase, at 5,359,447 to 5,360,034
_RS25920
BWI76_RS25925: BWI76_RS25925 - hypothetical protein, at 5,360,129 to 5,360,329
_RS25925
BWI76_RS25930: BWI76_RS25930 - glutathione-regulated potassium-efflux system protein KefB, at 5,360,341 to 5,362,146
_RS25930
BWI76_RS25935: BWI76_RS25935 - glutathione-regulated potassium-efflux system ancillary protein KefG, at 5,362,133 to 5,362,693
_RS25935
BWI76_RS25940: BWI76_RS25940 - hypothetical protein, at 5,362,614 to 5,362,847
_RS25940
BWI76_RS25945: BWI76_RS25945 - ABC transporter ATP-binding protein, at 5,362,869 to 5,364,773
_RS25945
Position (kb) 5360
5361
5362
5363 Strain fitness (log2 ratio) -1
0
1 at 5359.521 kb on - strand, within BWI76_RS25920 at 5359.585 kb on + strand, within BWI76_RS25920 at 5359.835 kb on - strand, within BWI76_RS25920 at 5359.993 kb on - strand at 5360.185 kb on + strand, within BWI76_RS25925 at 5360.254 kb on - strand, within BWI76_RS25925 at 5360.278 kb on - strand, within BWI76_RS25925 at 5360.425 kb on - strand at 5360.450 kb on - strand at 5360.628 kb on + strand, within BWI76_RS25930 at 5360.703 kb on - strand, within BWI76_RS25930 at 5361.199 kb on + strand, within BWI76_RS25930 at 5361.259 kb on + strand, within BWI76_RS25930 at 5361.267 kb on - strand, within BWI76_RS25930 at 5361.389 kb on + strand, within BWI76_RS25930 at 5361.407 kb on - strand, within BWI76_RS25930 at 5361.478 kb on + strand, within BWI76_RS25930 at 5361.493 kb on + strand, within BWI76_RS25930 at 5361.542 kb on - strand, within BWI76_RS25930 at 5361.692 kb on + strand, within BWI76_RS25930 at 5361.706 kb on - strand, within BWI76_RS25930 at 5361.724 kb on + strand, within BWI76_RS25930 at 5361.741 kb on - strand, within BWI76_RS25930 at 5361.932 kb on - strand, within BWI76_RS25930 at 5362.003 kb on + strand at 5362.211 kb on + strand, within BWI76_RS25935 at 5362.438 kb on - strand, within BWI76_RS25935 at 5362.480 kb on - strand, within BWI76_RS25935 at 5362.480 kb on - strand, within BWI76_RS25935 at 5362.927 kb on - strand at 5362.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 5,359,521 - BWI76_RS25920 0.13 -0.4 5,359,585 + BWI76_RS25920 0.23 +0.6 5,359,835 - BWI76_RS25920 0.66 +0.1 5,359,993 - -0.4 5,360,185 + BWI76_RS25925 0.28 -0.3 5,360,254 - BWI76_RS25925 0.62 +0.1 5,360,278 - BWI76_RS25925 0.74 +0.0 5,360,425 - +1.0 5,360,450 - -0.2 5,360,628 + BWI76_RS25930 0.16 +0.1 5,360,703 - BWI76_RS25930 0.20 +0.1 5,361,199 + BWI76_RS25930 0.48 -0.0 5,361,259 + BWI76_RS25930 0.51 +0.2 5,361,267 - BWI76_RS25930 0.51 +0.3 5,361,389 + BWI76_RS25930 0.58 +0.3 5,361,407 - BWI76_RS25930 0.59 -0.1 5,361,478 + BWI76_RS25930 0.63 +1.5 5,361,493 + BWI76_RS25930 0.64 +0.9 5,361,542 - BWI76_RS25930 0.67 +1.4 5,361,692 + BWI76_RS25930 0.75 +0.2 5,361,706 - BWI76_RS25930 0.76 +0.0 5,361,724 + BWI76_RS25930 0.77 -0.0 5,361,741 - BWI76_RS25930 0.78 -0.2 5,361,932 - BWI76_RS25930 0.88 -0.1 5,362,003 + +0.7 5,362,211 + BWI76_RS25935 0.14 -0.4 5,362,438 - BWI76_RS25935 0.54 +0.5 5,362,480 - BWI76_RS25935 0.62 -0.3 5,362,480 - BWI76_RS25935 0.62 -0.6 5,362,927 - -0.7 5,362,937 + -1.5
Or see this region's nucleotide sequence