Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5012.1

Experiment: Xylemvessel barcodes T0L1P3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5010.1 and Xcc-8004.5011.1 overlap by 6 nucleotidesXcc-8004.5011.1 and Xcc-8004.5012.1 are separated by 31 nucleotidesXcc-8004.5012.1 and Xcc-8004.5013.1 are separated by 482 nucleotides Xcc-8004.5010.1: Xcc-8004.5010.1 - tRNA dihydrouridine synthase A, at 4,748,126 to 4,749,226 Xcc-8004.5010.1 Xcc-8004.5011.1: Xcc-8004.5011.1 - hypothetical protein, at 4,749,221 to 4,749,538 Xcc-8004.5011.1 Xcc-8004.5012.1: Xcc-8004.5012.1 - FIG01211480: hypothetical protein, at 4,749,570 to 4,749,791 Xcc-8004.5012.1 Xcc-8004.5013.1: Xcc-8004.5013.1 - FOG: Ankyrin repeat, at 4,750,274 to 4,750,849 Xcc-8004.5013.1 Position (kb) 4749 4750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4748.679 kb on + strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.720 kb on - strand, within Xcc-8004.5010.1at 4748.856 kb on + strand, within Xcc-8004.5010.1at 4748.857 kb on - strand, within Xcc-8004.5010.1at 4749.009 kb on + strand, within Xcc-8004.5010.1at 4749.010 kb on - strand, within Xcc-8004.5010.1at 4749.108 kb on + strand, within Xcc-8004.5010.1at 4749.109 kb on - strand, within Xcc-8004.5010.1at 4749.187 kb on + strandat 4749.187 kb on + strandat 4749.187 kb on + strandat 4749.187 kb on + strandat 4749.187 kb on + strandat 4749.188 kb on - strandat 4749.279 kb on + strand, within Xcc-8004.5011.1at 4749.279 kb on + strand, within Xcc-8004.5011.1at 4749.279 kb on + strand, within Xcc-8004.5011.1at 4749.279 kb on + strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.293 kb on + strand, within Xcc-8004.5011.1at 4749.293 kb on + strand, within Xcc-8004.5011.1at 4749.317 kb on + strand, within Xcc-8004.5011.1at 4749.317 kb on + strand, within Xcc-8004.5011.1at 4749.318 kb on - strand, within Xcc-8004.5011.1at 4749.441 kb on + strand, within Xcc-8004.5011.1at 4749.442 kb on - strand, within Xcc-8004.5011.1at 4749.442 kb on - strand, within Xcc-8004.5011.1at 4749.442 kb on - strand, within Xcc-8004.5011.1at 4749.473 kb on + strand, within Xcc-8004.5011.1at 4749.473 kb on + strand, within Xcc-8004.5011.1at 4749.473 kb on + strand, within Xcc-8004.5011.1at 4749.474 kb on - strand, within Xcc-8004.5011.1at 4749.474 kb on - strand, within Xcc-8004.5011.1at 4749.474 kb on - strand, within Xcc-8004.5011.1at 4749.626 kb on - strand, within Xcc-8004.5012.1at 4749.626 kb on - strand, within Xcc-8004.5012.1at 4749.626 kb on - strand, within Xcc-8004.5012.1at 4749.667 kb on + strand, within Xcc-8004.5012.1at 4749.667 kb on + strand, within Xcc-8004.5012.1at 4749.668 kb on - strand, within Xcc-8004.5012.1at 4749.668 kb on - strand, within Xcc-8004.5012.1at 4749.668 kb on - strand, within Xcc-8004.5012.1at 4749.815 kb on + strandat 4749.905 kb on + strandat 4749.906 kb on - strandat 4749.906 kb on - strandat 4750.088 kb on + strandat 4750.088 kb on + strandat 4750.089 kb on - strandat 4750.410 kb on + strand, within Xcc-8004.5013.1at 4750.410 kb on + strand, within Xcc-8004.5013.1at 4750.410 kb on + strand, within Xcc-8004.5013.1at 4750.410 kb on + strand, within Xcc-8004.5013.1at 4750.411 kb on - strand, within Xcc-8004.5013.1at 4750.411 kb on - strand, within Xcc-8004.5013.1at 4750.411 kb on - strand, within Xcc-8004.5013.1at 4750.523 kb on - strand, within Xcc-8004.5013.1at 4750.599 kb on + strand, within Xcc-8004.5013.1at 4750.600 kb on - strand, within Xcc-8004.5013.1at 4750.642 kb on + strand, within Xcc-8004.5013.1at 4750.643 kb on - strand, within Xcc-8004.5013.1at 4750.643 kb on - strand, within Xcc-8004.5013.1at 4750.654 kb on - strand, within Xcc-8004.5013.1at 4750.654 kb on - strand, within Xcc-8004.5013.1at 4750.716 kb on + strand, within Xcc-8004.5013.1at 4750.717 kb on - strand, within Xcc-8004.5013.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P3
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4,748,679 + Xcc-8004.5010.1 0.50 -2.3
4,748,680 - Xcc-8004.5010.1 0.50 -0.9
4,748,680 - Xcc-8004.5010.1 0.50 +1.0
4,748,680 - Xcc-8004.5010.1 0.50 +0.4
4,748,680 - Xcc-8004.5010.1 0.50 -2.8
4,748,680 - Xcc-8004.5010.1 0.50 +2.7
4,748,680 - Xcc-8004.5010.1 0.50 -0.0
4,748,680 - Xcc-8004.5010.1 0.50 -2.5
4,748,720 - Xcc-8004.5010.1 0.54 +0.8
4,748,856 + Xcc-8004.5010.1 0.66 -0.8
4,748,857 - Xcc-8004.5010.1 0.66 +0.7
4,749,009 + Xcc-8004.5010.1 0.80 +1.8
4,749,010 - Xcc-8004.5010.1 0.80 -1.6
4,749,108 + Xcc-8004.5010.1 0.89 -1.2
4,749,109 - Xcc-8004.5010.1 0.89 +2.6
4,749,187 + +1.5
4,749,187 + -2.5
4,749,187 + -1.0
4,749,187 + -1.7
4,749,187 + +1.8
4,749,188 - +0.8
4,749,279 + Xcc-8004.5011.1 0.18 +1.2
4,749,279 + Xcc-8004.5011.1 0.18 +0.7
4,749,279 + Xcc-8004.5011.1 0.18 +1.2
4,749,279 + Xcc-8004.5011.1 0.18 +1.4
4,749,280 - Xcc-8004.5011.1 0.19 +1.2
4,749,280 - Xcc-8004.5011.1 0.19 +1.8
4,749,280 - Xcc-8004.5011.1 0.19 +0.5
4,749,280 - Xcc-8004.5011.1 0.19 +0.1
4,749,280 - Xcc-8004.5011.1 0.19 -0.7
4,749,280 - Xcc-8004.5011.1 0.19 -2.2
4,749,293 + Xcc-8004.5011.1 0.23 +0.7
4,749,293 + Xcc-8004.5011.1 0.23 -2.1
4,749,317 + Xcc-8004.5011.1 0.30 -0.6
4,749,317 + Xcc-8004.5011.1 0.30 +0.1
4,749,318 - Xcc-8004.5011.1 0.31 -1.8
4,749,441 + Xcc-8004.5011.1 0.69 +3.1
4,749,442 - Xcc-8004.5011.1 0.69 +0.5
4,749,442 - Xcc-8004.5011.1 0.69 -1.5
4,749,442 - Xcc-8004.5011.1 0.69 +1.0
4,749,473 + Xcc-8004.5011.1 0.79 +1.4
4,749,473 + Xcc-8004.5011.1 0.79 -2.3
4,749,473 + Xcc-8004.5011.1 0.79 +1.0
4,749,474 - Xcc-8004.5011.1 0.80 +0.5
4,749,474 - Xcc-8004.5011.1 0.80 +1.5
4,749,474 - Xcc-8004.5011.1 0.80 -3.4
4,749,626 - Xcc-8004.5012.1 0.25 -2.0
4,749,626 - Xcc-8004.5012.1 0.25 -2.1
4,749,626 - Xcc-8004.5012.1 0.25 -1.9
4,749,667 + Xcc-8004.5012.1 0.44 -2.2
4,749,667 + Xcc-8004.5012.1 0.44 -2.9
4,749,668 - Xcc-8004.5012.1 0.44 +0.5
4,749,668 - Xcc-8004.5012.1 0.44 -0.7
4,749,668 - Xcc-8004.5012.1 0.44 -0.1
4,749,815 + -0.5
4,749,905 + +0.6
4,749,906 - +0.9
4,749,906 - -1.2
4,750,088 + +1.8
4,750,088 + -1.5
4,750,089 - -0.0
4,750,410 + Xcc-8004.5013.1 0.24 -2.9
4,750,410 + Xcc-8004.5013.1 0.24 +1.3
4,750,410 + Xcc-8004.5013.1 0.24 -1.5
4,750,410 + Xcc-8004.5013.1 0.24 -0.0
4,750,411 - Xcc-8004.5013.1 0.24 +2.7
4,750,411 - Xcc-8004.5013.1 0.24 -0.0
4,750,411 - Xcc-8004.5013.1 0.24 -2.0
4,750,523 - Xcc-8004.5013.1 0.43 -0.4
4,750,599 + Xcc-8004.5013.1 0.56 +0.4
4,750,600 - Xcc-8004.5013.1 0.57 +0.1
4,750,642 + Xcc-8004.5013.1 0.64 -1.9
4,750,643 - Xcc-8004.5013.1 0.64 -0.2
4,750,643 - Xcc-8004.5013.1 0.64 +0.5
4,750,654 - Xcc-8004.5013.1 0.66 -1.5
4,750,654 - Xcc-8004.5013.1 0.66 +0.5
4,750,716 + Xcc-8004.5013.1 0.77 -2.2
4,750,717 - Xcc-8004.5013.1 0.77 +3.0

Or see this region's nucleotide sequence