Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4065

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4064 and GFF4065 overlap by 4 nucleotidesGFF4065 and GFF4066 are separated by 4 nucleotides GFF4064 - Uncharacterized protein ImpJ/VasE, at 25,181 to 26,524 GFF4064 GFF4065 - Outer membrane protein ImpK/VasF, OmpA/MotB domain, at 26,521 to 27,825 GFF4065 GFF4066 - Putative inner membrane protein, at 27,830 to 28,603 GFF4066 Position (kb) 26 27 28Strain fitness (log2 ratio) -1 0 1 2at 25.611 kb on + strand, within GFF4064at 25.724 kb on - strand, within GFF4064at 25.753 kb on + strand, within GFF4064at 25.754 kb on - strand, within GFF4064at 25.780 kb on + strand, within GFF4064at 26.009 kb on + strand, within GFF4064at 26.009 kb on + strand, within GFF4064at 26.009 kb on + strand, within GFF4064at 26.010 kb on - strand, within GFF4064at 26.043 kb on - strand, within GFF4064at 26.052 kb on - strand, within GFF4064at 26.052 kb on - strand, within GFF4064at 26.165 kb on + strand, within GFF4064at 26.165 kb on + strand, within GFF4064at 26.399 kb on + strandat 26.399 kb on + strandat 26.400 kb on - strandat 26.400 kb on - strandat 26.402 kb on + strandat 26.469 kb on - strandat 26.589 kb on + strandat 26.831 kb on + strand, within GFF4065at 26.832 kb on - strand, within GFF4065at 26.873 kb on + strand, within GFF4065at 26.889 kb on + strand, within GFF4065at 27.051 kb on - strand, within GFF4065at 27.060 kb on + strand, within GFF4065at 27.065 kb on - strand, within GFF4065at 27.136 kb on - strand, within GFF4065at 27.307 kb on + strand, within GFF4065at 27.351 kb on + strand, within GFF4065at 27.352 kb on - strand, within GFF4065at 27.352 kb on - strand, within GFF4065at 27.478 kb on - strand, within GFF4065at 27.656 kb on + strand, within GFF4065at 27.874 kb on - strandat 27.914 kb on + strand, within GFF4066at 27.921 kb on + strand, within GFF4066at 27.922 kb on - strand, within GFF4066at 27.954 kb on + strand, within GFF4066at 27.955 kb on - strand, within GFF4066at 27.955 kb on - strand, within GFF4066at 27.955 kb on - strand, within GFF4066at 28.037 kb on - strand, within GFF4066at 28.037 kb on - strand, within GFF4066at 28.100 kb on + strand, within GFF4066at 28.100 kb on + strand, within GFF4066at 28.100 kb on + strand, within GFF4066at 28.101 kb on - strand, within GFF4066at 28.101 kb on - strand, within GFF4066at 28.101 kb on - strand, within GFF4066at 28.165 kb on + strand, within GFF4066at 28.166 kb on - strand, within GFF4066at 28.167 kb on + strand, within GFF4066at 28.168 kb on - strand, within GFF4066at 28.174 kb on - strand, within GFF4066at 28.240 kb on - strand, within GFF4066at 28.402 kb on + strand, within GFF4066at 28.421 kb on + strand, within GFF4066at 28.509 kb on - strand, within GFF4066at 28.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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25,611 + GFF4064 0.32 -0.0
25,724 - GFF4064 0.40 +0.0
25,753 + GFF4064 0.43 -0.4
25,754 - GFF4064 0.43 -0.2
25,780 + GFF4064 0.45 +0.5
26,009 + GFF4064 0.62 +0.1
26,009 + GFF4064 0.62 +1.1
26,009 + GFF4064 0.62 +0.7
26,010 - GFF4064 0.62 -1.5
26,043 - GFF4064 0.64 -0.8
26,052 - GFF4064 0.65 -0.2
26,052 - GFF4064 0.65 +0.3
26,165 + GFF4064 0.73 +0.1
26,165 + GFF4064 0.73 -0.1
26,399 + +0.2
26,399 + -0.1
26,400 - +0.3
26,400 - +0.3
26,402 + +0.1
26,469 - +0.4
26,589 + -0.0
26,831 + GFF4065 0.24 +1.8
26,832 - GFF4065 0.24 -0.1
26,873 + GFF4065 0.27 +0.4
26,889 + GFF4065 0.28 -0.5
27,051 - GFF4065 0.41 -0.4
27,060 + GFF4065 0.41 -0.2
27,065 - GFF4065 0.42 -0.1
27,136 - GFF4065 0.47 -1.2
27,307 + GFF4065 0.60 +0.6
27,351 + GFF4065 0.64 -0.1
27,352 - GFF4065 0.64 -0.0
27,352 - GFF4065 0.64 -0.3
27,478 - GFF4065 0.73 -0.2
27,656 + GFF4065 0.87 -1.1
27,874 - +0.1
27,914 + GFF4066 0.11 +0.7
27,921 + GFF4066 0.12 +0.1
27,922 - GFF4066 0.12 +0.5
27,954 + GFF4066 0.16 +0.1
27,955 - GFF4066 0.16 +0.2
27,955 - GFF4066 0.16 -0.1
27,955 - GFF4066 0.16 +0.0
28,037 - GFF4066 0.27 -0.4
28,037 - GFF4066 0.27 -0.0
28,100 + GFF4066 0.35 +0.2
28,100 + GFF4066 0.35 +0.3
28,100 + GFF4066 0.35 +0.4
28,101 - GFF4066 0.35 +0.5
28,101 - GFF4066 0.35 -0.2
28,101 - GFF4066 0.35 +1.8
28,165 + GFF4066 0.43 +0.0
28,166 - GFF4066 0.43 -0.4
28,167 + GFF4066 0.44 +0.2
28,168 - GFF4066 0.44 -0.1
28,174 - GFF4066 0.44 +1.6
28,240 - GFF4066 0.53 -0.4
28,402 + GFF4066 0.74 +0.7
28,421 + GFF4066 0.76 -0.8
28,509 - GFF4066 0.88 +0.3
28,654 - -0.0

Or see this region's nucleotide sequence