Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF926

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
101,992	+		GFF924	0.30	-0.0
102,064	+		GFF924	0.37	+0.0
102,065	-		GFF924	0.38	+0.1
102,123	-		GFF924	0.44	-0.3
102,165	-		GFF924	0.48	+1.5
102,337	-		GFF924	0.66	+0.6
102,368	+		GFF924	0.70	+0.6
102,369	-		GFF924	0.70	+0.2
102,372	-		GFF924	0.70	+0.0
102,380	-		GFF924	0.71	-0.3
102,380	-		GFF924	0.71	+0.3
102,458	+		GFF924	0.79	+0.0
102,750	-		GFF925	0.85	+0.2
102,764	-				-0.7
103,035	+				+0.5
103,040	-				-0.5
103,040	-				+0.3
103,243	-				+0.3
103,336	-		GFF926	0.12	-0.0
103,603	+		GFF926	0.22	+0.3
103,606	+		GFF926	0.22	+0.4
103,774	+		GFF926	0.28	+0.7
103,906	+		GFF926	0.33	+0.9
103,918	+		GFF926	0.34	+0.5
103,919	-		GFF926	0.34	+1.7
103,967	-		GFF926	0.35	+0.2
103,977	-		GFF926	0.36	+0.9
104,155	+		GFF926	0.42	+0.4
104,248	-		GFF926	0.46	+0.6
104,248	-		GFF926	0.46	-0.0
104,486	-		GFF926	0.54	+0.4
104,510	-		GFF926	0.55	+0.5
104,530	+		GFF926	0.56	+1.4
104,530	+		GFF926	0.56	+0.7
104,530	+		GFF926	0.56	-0.3
104,607	-		GFF926	0.59	+1.4
104,669	+		GFF926	0.61	+0.3
104,740	+		GFF926	0.63	+0.3
104,847	+		GFF926	0.67	+0.5
104,847	+		GFF926	0.67	+0.2
104,915	-		GFF926	0.70	+0.4
105,016	+		GFF926	0.73	-0.1
105,256	-		GFF926	0.82	-0.2
105,260	+		GFF926	0.82	+0.2
105,293	-		GFF926	0.83	-1.6
105,626	+				-0.2
105,657	-				-1.6
105,657	-				+0.1
105,657	-				+0.6
105,657	-				-0.4
105,690	-				+0.5
105,691	+				-0.9
105,691	+				+0.1
105,691	+				+0.3
105,692	-				+0.3
105,692	-				+0.0
105,692	-				+1.7
105,692	-				+0.3
105,900	-				+0.5
106,021	+		GFF927	0.35	-0.2
106,025	+		GFF927	0.36	-2.4
106,039	-		GFF927	0.39	+0.0
106,039	-		GFF927	0.39	+1.2
106,042	+		GFF927	0.40	-0.2
106,073	+		GFF927	0.47	-0.1
106,074	-		GFF927	0.47	-0.4
106,083	-		GFF927	0.49	-0.5
106,095	+		GFF927	0.52	+0.1
106,144	-		GFF927	0.63	-0.1
106,153	-		GFF927	0.65	+0.7
106,164	+		GFF927	0.67	-0.1
106,164	+		GFF927	0.67	+0.6
106,501	-		GFF928	0.30	-0.1
106,501	-		GFF928	0.30	-0.8
106,545	-		GFF928	0.41	-0.7
106,545	-		GFF928	0.41	+0.1
106,545	-		GFF928	0.41	-1.2
106,595	-		GFF928	0.54	+1.0
106,700	-		GFF928	0.81	+0.0
106,718	+		GFF928	0.86	+1.0
106,719	-		GFF928	0.86	-0.2
106,722	+		GFF928	0.87	+0.1
106,723	-		GFF928	0.87	+0.4
106,723	-		GFF928	0.87	-1.1