Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF623 and GFF624 are separated by 120 nucleotides GFF624 and GFF625 overlap by 1 nucleotides GFF625 and GFF626 overlap by 17 nucleotides
GFF623 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 363,877 to 366,429
GFF623
GFF624 - Type IV pilus biogenesis protein PilM, at 366,550 to 367,329
GFF624
GFF625 - Type IV pilus biogenesis protein PilN, at 367,329 to 367,868
GFF625
GFF626 - Type IV pilus biogenesis protein PilO, at 367,852 to 368,325
GFF626
Position (kb) 366
367
368 Strain fitness (log2 ratio) -1
0
1 at 365.612 kb on + strand, within GFF623 at 365.612 kb on + strand, within GFF623 at 365.613 kb on - strand, within GFF623 at 365.613 kb on - strand, within GFF623 at 365.613 kb on - strand, within GFF623 at 365.613 kb on - strand, within GFF623 at 365.642 kb on + strand, within GFF623 at 365.688 kb on + strand, within GFF623 at 365.689 kb on - strand, within GFF623 at 365.728 kb on - strand, within GFF623 at 365.728 kb on - strand, within GFF623 at 365.729 kb on + strand, within GFF623 at 365.741 kb on - strand, within GFF623 at 365.759 kb on - strand, within GFF623 at 365.803 kb on - strand, within GFF623 at 365.808 kb on + strand, within GFF623 at 365.856 kb on + strand, within GFF623 at 365.857 kb on - strand, within GFF623 at 365.857 kb on - strand, within GFF623 at 365.928 kb on - strand, within GFF623 at 365.934 kb on - strand, within GFF623 at 366.073 kb on - strand, within GFF623 at 366.073 kb on - strand, within GFF623 at 366.129 kb on + strand, within GFF623 at 366.159 kb on - strand, within GFF623 at 366.248 kb on + strand at 366.259 kb on - strand at 366.279 kb on - strand at 366.331 kb on + strand at 366.346 kb on - strand at 366.363 kb on - strand at 366.410 kb on - strand at 366.414 kb on - strand at 366.484 kb on + strand at 366.484 kb on + strand at 366.486 kb on + strand at 366.572 kb on + strand at 366.583 kb on - strand at 366.583 kb on - strand at 366.723 kb on - strand, within GFF624 at 366.723 kb on - strand, within GFF624 at 366.752 kb on + strand, within GFF624 at 366.766 kb on + strand, within GFF624 at 366.927 kb on - strand, within GFF624 at 367.041 kb on - strand, within GFF624 at 367.059 kb on + strand, within GFF624 at 367.062 kb on - strand, within GFF624 at 367.204 kb on - strand, within GFF624 at 367.322 kb on + strand at 367.322 kb on + strand at 367.323 kb on - strand at 367.371 kb on + strand at 367.372 kb on - strand at 367.376 kb on - strand at 367.534 kb on + strand, within GFF625 at 367.535 kb on - strand, within GFF625 at 367.619 kb on + strand, within GFF625 at 367.619 kb on + strand, within GFF625 at 367.620 kb on - strand, within GFF625 at 367.620 kb on - strand, within GFF625 at 367.677 kb on + strand, within GFF625 at 367.870 kb on - strand at 368.265 kb on + strand, within GFF626
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 365,612 + GFF623 0.68 +0.1 365,612 + GFF623 0.68 -0.2 365,613 - GFF623 0.68 +0.3 365,613 - GFF623 0.68 -0.2 365,613 - GFF623 0.68 -0.2 365,613 - GFF623 0.68 -0.4 365,642 + GFF623 0.69 +0.6 365,688 + GFF623 0.71 -0.4 365,689 - GFF623 0.71 +0.2 365,728 - GFF623 0.73 +0.5 365,728 - GFF623 0.73 +0.1 365,729 + GFF623 0.73 -0.3 365,741 - GFF623 0.73 -0.8 365,759 - GFF623 0.74 +0.1 365,803 - GFF623 0.75 -0.1 365,808 + GFF623 0.76 +0.1 365,856 + GFF623 0.78 +0.2 365,857 - GFF623 0.78 -0.3 365,857 - GFF623 0.78 -0.0 365,928 - GFF623 0.80 +0.1 365,934 - GFF623 0.81 -0.2 366,073 - GFF623 0.86 -0.0 366,073 - GFF623 0.86 +0.7 366,129 + GFF623 0.88 +0.4 366,159 - GFF623 0.89 +0.1 366,248 + -0.4 366,259 - -0.5 366,279 - -0.6 366,331 + +0.5 366,346 - +0.0 366,363 - -0.4 366,410 - +0.0 366,414 - +0.6 366,484 + -0.4 366,484 + -0.2 366,486 + -0.1 366,572 + +0.3 366,583 - +0.5 366,583 - +0.3 366,723 - GFF624 0.22 -0.4 366,723 - GFF624 0.22 -0.6 366,752 + GFF624 0.26 -0.7 366,766 + GFF624 0.28 +0.2 366,927 - GFF624 0.48 -0.1 367,041 - GFF624 0.63 -0.5 367,059 + GFF624 0.65 +0.0 367,062 - GFF624 0.66 +0.1 367,204 - GFF624 0.84 -0.2 367,322 + +0.9 367,322 + +0.0 367,323 - -0.2 367,371 + -0.0 367,372 - -0.2 367,376 - +0.1 367,534 + GFF625 0.38 +0.0 367,535 - GFF625 0.38 -0.1 367,619 + GFF625 0.54 +0.4 367,619 + GFF625 0.54 +0.2 367,620 - GFF625 0.54 +0.1 367,620 - GFF625 0.54 -0.1 367,677 + GFF625 0.64 -0.6 367,870 - +0.3 368,265 + GFF626 0.87 -0.3
Or see this region's nucleotide sequence