Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3502

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3500 and Pf6N2E2_3501 are separated by 3 nucleotidesPf6N2E2_3501 and Pf6N2E2_3502 overlap by 4 nucleotidesPf6N2E2_3502 and Pf6N2E2_3503 are separated by 48 nucleotidesPf6N2E2_3503 and Pf6N2E2_3504 are separated by 235 nucleotides Pf6N2E2_3500 - DNA-damage-inducible protein F, at 4,080,058 to 4,081,407 _3500 Pf6N2E2_3501 - hypothetical protein, at 4,081,411 to 4,082,208 _3501 Pf6N2E2_3502 - VgrG protein, at 4,082,205 to 4,083,251 _3502 Pf6N2E2_3503 - hypothetical protein, at 4,083,300 to 4,083,650 _3503 Pf6N2E2_3504 - Biosynthetic arginine decarboxylase (EC 4.1.1.19), at 4,083,886 to 4,085,799 _3504 Position (kb) 4082 4083 4084Strain fitness (log2 ratio) -2 -1 0 1 2at 4081.302 kb on - strandat 4081.302 kb on - strandat 4081.405 kb on + strandat 4081.406 kb on - strandat 4081.552 kb on - strand, within Pf6N2E2_3501at 4081.598 kb on + strand, within Pf6N2E2_3501at 4081.598 kb on + strand, within Pf6N2E2_3501at 4081.598 kb on + strand, within Pf6N2E2_3501at 4081.599 kb on - strand, within Pf6N2E2_3501at 4081.599 kb on - strand, within Pf6N2E2_3501at 4081.599 kb on - strand, within Pf6N2E2_3501at 4081.602 kb on + strand, within Pf6N2E2_3501at 4081.602 kb on + strand, within Pf6N2E2_3501at 4081.602 kb on + strand, within Pf6N2E2_3501at 4081.602 kb on + strand, within Pf6N2E2_3501at 4081.602 kb on + strand, within Pf6N2E2_3501at 4081.602 kb on + strand, within Pf6N2E2_3501at 4081.603 kb on - strand, within Pf6N2E2_3501at 4081.603 kb on - strand, within Pf6N2E2_3501at 4081.850 kb on + strand, within Pf6N2E2_3501at 4081.851 kb on - strand, within Pf6N2E2_3501at 4081.851 kb on - strand, within Pf6N2E2_3501at 4081.851 kb on - strand, within Pf6N2E2_3501at 4081.862 kb on + strand, within Pf6N2E2_3501at 4081.862 kb on + strand, within Pf6N2E2_3501at 4081.863 kb on - strand, within Pf6N2E2_3501at 4081.871 kb on + strand, within Pf6N2E2_3501at 4081.871 kb on + strand, within Pf6N2E2_3501at 4081.871 kb on + strand, within Pf6N2E2_3501at 4081.872 kb on - strand, within Pf6N2E2_3501at 4081.872 kb on - strand, within Pf6N2E2_3501at 4081.872 kb on - strand, within Pf6N2E2_3501at 4081.872 kb on - strand, within Pf6N2E2_3501at 4081.872 kb on - strand, within Pf6N2E2_3501at 4081.874 kb on + strand, within Pf6N2E2_3501at 4081.874 kb on + strand, within Pf6N2E2_3501at 4081.874 kb on + strand, within Pf6N2E2_3501at 4081.875 kb on - strand, within Pf6N2E2_3501at 4081.875 kb on - strand, within Pf6N2E2_3501at 4081.875 kb on - strand, within Pf6N2E2_3501at 4081.875 kb on - strand, within Pf6N2E2_3501at 4081.875 kb on - strand, within Pf6N2E2_3501at 4081.875 kb on - strand, within Pf6N2E2_3501at 4081.875 kb on - strand, within Pf6N2E2_3501at 4081.875 kb on - strand, within Pf6N2E2_3501at 4082.155 kb on + strandat 4082.156 kb on - strandat 4082.403 kb on + strand, within Pf6N2E2_3502at 4082.403 kb on + strand, within Pf6N2E2_3502at 4082.403 kb on + strand, within Pf6N2E2_3502at 4082.404 kb on - strand, within Pf6N2E2_3502at 4082.404 kb on - strand, within Pf6N2E2_3502at 4082.463 kb on - strand, within Pf6N2E2_3502at 4082.573 kb on - strand, within Pf6N2E2_3502at 4082.573 kb on - strand, within Pf6N2E2_3502at 4082.573 kb on - strand, within Pf6N2E2_3502at 4082.735 kb on - strand, within Pf6N2E2_3502at 4082.936 kb on - strand, within Pf6N2E2_3502at 4082.973 kb on - strand, within Pf6N2E2_3502at 4083.042 kb on + strand, within Pf6N2E2_3502at 4083.346 kb on + strand, within Pf6N2E2_3503at 4083.346 kb on + strand, within Pf6N2E2_3503at 4083.400 kb on + strand, within Pf6N2E2_3503at 4083.400 kb on + strand, within Pf6N2E2_3503at 4083.400 kb on + strand, within Pf6N2E2_3503at 4083.401 kb on - strand, within Pf6N2E2_3503at 4083.401 kb on - strand, within Pf6N2E2_3503at 4083.401 kb on - strand, within Pf6N2E2_3503at 4083.401 kb on - strand, within Pf6N2E2_3503at 4083.472 kb on - strand, within Pf6N2E2_3503at 4083.524 kb on + strand, within Pf6N2E2_3503at 4083.569 kb on + strand, within Pf6N2E2_3503at 4083.570 kb on - strand, within Pf6N2E2_3503at 4083.570 kb on - strand, within Pf6N2E2_3503at 4083.582 kb on + strand, within Pf6N2E2_3503at 4083.582 kb on + strand, within Pf6N2E2_3503at 4083.583 kb on - strand, within Pf6N2E2_3503at 4083.583 kb on - strand, within Pf6N2E2_3503at 4083.583 kb on - strand, within Pf6N2E2_3503at 4083.583 kb on - strand, within Pf6N2E2_3503at 4083.589 kb on + strand, within Pf6N2E2_3503at 4083.590 kb on - strand, within Pf6N2E2_3503at 4083.590 kb on - strand, within Pf6N2E2_3503at 4083.602 kb on - strand, within Pf6N2E2_3503at 4083.610 kb on + strand, within Pf6N2E2_3503at 4083.611 kb on - strand, within Pf6N2E2_3503at 4083.611 kb on - strand, within Pf6N2E2_3503at 4083.627 kb on - strandat 4083.627 kb on - strandat 4083.640 kb on + strandat 4083.640 kb on + strandat 4083.640 kb on + strandat 4083.641 kb on - strandat 4083.648 kb on + strandat 4083.648 kb on + strandat 4083.663 kb on + strandat 4083.710 kb on + strandat 4083.710 kb on + strandat 4083.711 kb on - strandat 4083.740 kb on + strandat 4083.820 kb on + strandat 4084.025 kb on + strandat 4084.025 kb on + strandat 4084.073 kb on + strandat 4084.073 kb on + strandat 4084.097 kb on + strand, within Pf6N2E2_3504at 4084.097 kb on + strand, within Pf6N2E2_3504at 4084.097 kb on + strand, within Pf6N2E2_3504at 4084.097 kb on + strand, within Pf6N2E2_3504at 4084.187 kb on + strand, within Pf6N2E2_3504at 4084.187 kb on + strand, within Pf6N2E2_3504at 4084.187 kb on + strand, within Pf6N2E2_3504at 4084.188 kb on - strand, within Pf6N2E2_3504at 4084.250 kb on + strand, within Pf6N2E2_3504at 4084.250 kb on + strand, within Pf6N2E2_3504at 4084.251 kb on - strand, within Pf6N2E2_3504

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,081,302 - -1.5
4,081,302 - +0.4
4,081,405 + +0.4
4,081,406 - +0.2
4,081,552 - Pf6N2E2_3501 0.18 +0.7
4,081,598 + Pf6N2E2_3501 0.23 +0.7
4,081,598 + Pf6N2E2_3501 0.23 -0.1
4,081,598 + Pf6N2E2_3501 0.23 +0.9
4,081,599 - Pf6N2E2_3501 0.24 -0.1
4,081,599 - Pf6N2E2_3501 0.24 +0.4
4,081,599 - Pf6N2E2_3501 0.24 +0.1
4,081,602 + Pf6N2E2_3501 0.24 +0.2
4,081,602 + Pf6N2E2_3501 0.24 -0.4
4,081,602 + Pf6N2E2_3501 0.24 +0.1
4,081,602 + Pf6N2E2_3501 0.24 +0.5
4,081,602 + Pf6N2E2_3501 0.24 +0.5
4,081,602 + Pf6N2E2_3501 0.24 +1.9
4,081,603 - Pf6N2E2_3501 0.24 +0.3
4,081,603 - Pf6N2E2_3501 0.24 -1.8
4,081,850 + Pf6N2E2_3501 0.55 -0.0
4,081,851 - Pf6N2E2_3501 0.55 +0.7
4,081,851 - Pf6N2E2_3501 0.55 -0.3
4,081,851 - Pf6N2E2_3501 0.55 +0.8
4,081,862 + Pf6N2E2_3501 0.57 -0.6
4,081,862 + Pf6N2E2_3501 0.57 -0.8
4,081,863 - Pf6N2E2_3501 0.57 -0.4
4,081,871 + Pf6N2E2_3501 0.58 -0.4
4,081,871 + Pf6N2E2_3501 0.58 -0.4
4,081,871 + Pf6N2E2_3501 0.58 +0.9
4,081,872 - Pf6N2E2_3501 0.58 +0.2
4,081,872 - Pf6N2E2_3501 0.58 -0.9
4,081,872 - Pf6N2E2_3501 0.58 +0.9
4,081,872 - Pf6N2E2_3501 0.58 -0.5
4,081,872 - Pf6N2E2_3501 0.58 +0.4
4,081,874 + Pf6N2E2_3501 0.58 -0.2
4,081,874 + Pf6N2E2_3501 0.58 +1.0
4,081,874 + Pf6N2E2_3501 0.58 +1.7
4,081,875 - Pf6N2E2_3501 0.58 -1.3
4,081,875 - Pf6N2E2_3501 0.58 +0.4
4,081,875 - Pf6N2E2_3501 0.58 -0.2
4,081,875 - Pf6N2E2_3501 0.58 +0.3
4,081,875 - Pf6N2E2_3501 0.58 +0.6
4,081,875 - Pf6N2E2_3501 0.58 -0.8
4,081,875 - Pf6N2E2_3501 0.58 +1.3
4,081,875 - Pf6N2E2_3501 0.58 +1.2
4,082,155 + -1.4
4,082,156 - +0.5
4,082,403 + Pf6N2E2_3502 0.19 +0.3
4,082,403 + Pf6N2E2_3502 0.19 +0.5
4,082,403 + Pf6N2E2_3502 0.19 -0.5
4,082,404 - Pf6N2E2_3502 0.19 +1.0
4,082,404 - Pf6N2E2_3502 0.19 +0.7
4,082,463 - Pf6N2E2_3502 0.25 +0.7
4,082,573 - Pf6N2E2_3502 0.35 +0.5
4,082,573 - Pf6N2E2_3502 0.35 +0.3
4,082,573 - Pf6N2E2_3502 0.35 +1.5
4,082,735 - Pf6N2E2_3502 0.51 +0.2
4,082,936 - Pf6N2E2_3502 0.70 +1.0
4,082,973 - Pf6N2E2_3502 0.73 +1.0
4,083,042 + Pf6N2E2_3502 0.80 -2.1
4,083,346 + Pf6N2E2_3503 0.13 +0.0
4,083,346 + Pf6N2E2_3503 0.13 +1.3
4,083,400 + Pf6N2E2_3503 0.28 -0.9
4,083,400 + Pf6N2E2_3503 0.28 +0.2
4,083,400 + Pf6N2E2_3503 0.28 -0.2
4,083,401 - Pf6N2E2_3503 0.29 +1.1
4,083,401 - Pf6N2E2_3503 0.29 -0.4
4,083,401 - Pf6N2E2_3503 0.29 -0.3
4,083,401 - Pf6N2E2_3503 0.29 +0.6
4,083,472 - Pf6N2E2_3503 0.49 +0.3
4,083,524 + Pf6N2E2_3503 0.64 +0.5
4,083,569 + Pf6N2E2_3503 0.77 +0.2
4,083,570 - Pf6N2E2_3503 0.77 -0.0
4,083,570 - Pf6N2E2_3503 0.77 -0.1
4,083,582 + Pf6N2E2_3503 0.80 -0.7
4,083,582 + Pf6N2E2_3503 0.80 +0.5
4,083,583 - Pf6N2E2_3503 0.81 +0.8
4,083,583 - Pf6N2E2_3503 0.81 -0.2
4,083,583 - Pf6N2E2_3503 0.81 -0.3
4,083,583 - Pf6N2E2_3503 0.81 +0.9
4,083,589 + Pf6N2E2_3503 0.82 +0.3
4,083,590 - Pf6N2E2_3503 0.83 +0.9
4,083,590 - Pf6N2E2_3503 0.83 +1.0
4,083,602 - Pf6N2E2_3503 0.86 +0.6
4,083,610 + Pf6N2E2_3503 0.88 -1.2
4,083,611 - Pf6N2E2_3503 0.89 +0.6
4,083,611 - Pf6N2E2_3503 0.89 +0.7
4,083,627 - +1.3
4,083,627 - +1.3
4,083,640 + +0.4
4,083,640 + -1.5
4,083,640 + -0.7
4,083,641 - +0.7
4,083,648 + +0.3
4,083,648 + -0.2
4,083,663 + +0.2
4,083,710 + -0.6
4,083,710 + -0.0
4,083,711 - +0.4
4,083,740 + -0.0
4,083,820 + +0.1
4,084,025 + +0.1
4,084,025 + +1.0
4,084,073 + +0.8
4,084,073 + +0.5
4,084,097 + Pf6N2E2_3504 0.11 +0.6
4,084,097 + Pf6N2E2_3504 0.11 -0.6
4,084,097 + Pf6N2E2_3504 0.11 +0.3
4,084,097 + Pf6N2E2_3504 0.11 -1.0
4,084,187 + Pf6N2E2_3504 0.16 +0.9
4,084,187 + Pf6N2E2_3504 0.16 -0.7
4,084,187 + Pf6N2E2_3504 0.16 +0.1
4,084,188 - Pf6N2E2_3504 0.16 +0.1
4,084,250 + Pf6N2E2_3504 0.19 +1.0
4,084,250 + Pf6N2E2_3504 0.19 -0.1
4,084,251 - Pf6N2E2_3504 0.19 -1.4

Or see this region's nucleotide sequence