Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4809 and GFF4810 overlap by 4 nucleotides GFF4810 and GFF4811 overlap by 19 nucleotides GFF4811 and GFF4812 are separated by 10 nucleotides
GFF4809 - CRISPR-associated protein Cas1, at 108,503 to 109,423
GFF4809
GFF4810 - CRISPR-associated protein, Cse3 family, at 109,420 to 110,070
GFF4810
GFF4811 - CRISPR-associated protein, Cas5e family, at 110,052 to 110,798
GFF4811
GFF4812 - CRISPR-associated protein, Cse4 family, at 110,809 to 111,867
GFF4812
Position (kb) 110
111 Strain fitness (log2 ratio) -1
0
1 at 109.271 kb on - strand, within GFF4809 at 109.271 kb on - strand, within GFF4809 at 109.295 kb on - strand, within GFF4809 at 109.359 kb on + strand at 109.383 kb on - strand at 109.477 kb on - strand at 109.541 kb on + strand, within GFF4810 at 109.723 kb on - strand, within GFF4810 at 110.269 kb on + strand, within GFF4811 at 110.270 kb on - strand, within GFF4811 at 110.356 kb on + strand, within GFF4811 at 110.379 kb on + strand, within GFF4811 at 110.380 kb on - strand, within GFF4811 at 110.458 kb on + strand, within GFF4811 at 110.537 kb on + strand, within GFF4811 at 110.542 kb on - strand, within GFF4811 at 110.542 kb on - strand, within GFF4811 at 110.679 kb on + strand, within GFF4811 at 110.679 kb on + strand, within GFF4811 at 110.679 kb on + strand, within GFF4811 at 110.680 kb on - strand, within GFF4811 at 110.680 kb on - strand, within GFF4811 at 110.710 kb on - strand, within GFF4811 at 110.902 kb on - strand at 110.913 kb on + strand at 110.913 kb on + strand at 110.914 kb on - strand at 110.925 kb on + strand, within GFF4812 at 110.925 kb on + strand, within GFF4812 at 110.925 kb on + strand, within GFF4812 at 110.926 kb on - strand, within GFF4812 at 111.039 kb on - strand, within GFF4812 at 111.179 kb on + strand, within GFF4812 at 111.180 kb on - strand, within GFF4812 at 111.180 kb on - strand, within GFF4812 at 111.180 kb on - strand, within GFF4812 at 111.413 kb on - strand, within GFF4812 at 111.555 kb on + strand, within GFF4812 at 111.600 kb on - strand, within GFF4812 at 111.684 kb on + strand, within GFF4812 at 111.695 kb on - strand, within GFF4812 at 111.710 kb on - strand, within GFF4812 at 111.720 kb on + strand, within GFF4812 at 111.721 kb on - strand, within GFF4812
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 109,271 - GFF4809 0.83 +0.2 109,271 - GFF4809 0.83 -0.1 109,295 - GFF4809 0.86 +0.0 109,359 + +0.7 109,383 - -0.2 109,477 - +0.5 109,541 + GFF4810 0.19 -0.5 109,723 - GFF4810 0.47 +0.3 110,269 + GFF4811 0.29 +0.6 110,270 - GFF4811 0.29 +0.1 110,356 + GFF4811 0.41 +0.5 110,379 + GFF4811 0.44 +0.3 110,380 - GFF4811 0.44 +0.3 110,458 + GFF4811 0.54 +1.2 110,537 + GFF4811 0.65 +0.0 110,542 - GFF4811 0.66 -0.1 110,542 - GFF4811 0.66 +0.0 110,679 + GFF4811 0.84 +0.3 110,679 + GFF4811 0.84 -0.6 110,679 + GFF4811 0.84 +0.4 110,680 - GFF4811 0.84 +0.9 110,680 - GFF4811 0.84 +0.7 110,710 - GFF4811 0.88 +0.2 110,902 - -1.3 110,913 + -0.8 110,913 + -0.6 110,914 - -0.7 110,925 + GFF4812 0.11 +0.5 110,925 + GFF4812 0.11 +0.1 110,925 + GFF4812 0.11 -0.2 110,926 - GFF4812 0.11 -0.4 111,039 - GFF4812 0.22 -0.2 111,179 + GFF4812 0.35 -0.1 111,180 - GFF4812 0.35 -0.1 111,180 - GFF4812 0.35 +0.4 111,180 - GFF4812 0.35 -0.5 111,413 - GFF4812 0.57 +0.1 111,555 + GFF4812 0.70 -0.9 111,600 - GFF4812 0.75 +0.1 111,684 + GFF4812 0.83 +0.1 111,695 - GFF4812 0.84 -1.0 111,710 - GFF4812 0.85 -0.5 111,720 + GFF4812 0.86 -0.2 111,721 - GFF4812 0.86 +0.3
Or see this region's nucleotide sequence