Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4062 and GFF4063 are separated by 111 nucleotides GFF4063 and GFF4064 are separated by 3 nucleotides GFF4064 and GFF4065 overlap by 4 nucleotides
GFF4062 - Putative cytoplasmic protein USSDB7A, at 24,089 to 24,574
GFF4062
GFF4063 - Type VI secretion lipoprotein/VasD, at 24,686 to 25,177
GFF4063
GFF4064 - Uncharacterized protein ImpJ/VasE, at 25,181 to 26,524
GFF4064
GFF4065 - Outer membrane protein ImpK/VasF, OmpA/MotB domain, at 26,521 to 27,825
GFF4065
Position (kb) 25
26
27 Strain fitness (log2 ratio) -1
0
1 at 24.269 kb on + strand, within GFF4062 at 24.270 kb on - strand, within GFF4062 at 24.270 kb on - strand, within GFF4062 at 24.302 kb on + strand, within GFF4062 at 24.829 kb on - strand, within GFF4063 at 25.156 kb on - strand at 25.322 kb on + strand, within GFF4064 at 25.327 kb on + strand, within GFF4064 at 25.611 kb on + strand, within GFF4064 at 25.724 kb on - strand, within GFF4064 at 25.753 kb on + strand, within GFF4064 at 25.754 kb on - strand, within GFF4064 at 25.780 kb on + strand, within GFF4064 at 26.009 kb on + strand, within GFF4064 at 26.009 kb on + strand, within GFF4064 at 26.009 kb on + strand, within GFF4064 at 26.010 kb on - strand, within GFF4064 at 26.043 kb on - strand, within GFF4064 at 26.052 kb on - strand, within GFF4064 at 26.052 kb on - strand, within GFF4064 at 26.165 kb on + strand, within GFF4064 at 26.165 kb on + strand, within GFF4064 at 26.399 kb on + strand at 26.399 kb on + strand at 26.400 kb on - strand at 26.400 kb on - strand at 26.402 kb on + strand at 26.469 kb on - strand at 26.589 kb on + strand at 26.831 kb on + strand, within GFF4065 at 26.832 kb on - strand, within GFF4065 at 26.873 kb on + strand, within GFF4065 at 26.889 kb on + strand, within GFF4065 at 27.051 kb on - strand, within GFF4065 at 27.060 kb on + strand, within GFF4065 at 27.065 kb on - strand, within GFF4065 at 27.136 kb on - strand, within GFF4065 at 27.307 kb on + strand, within GFF4065 at 27.351 kb on + strand, within GFF4065 at 27.352 kb on - strand, within GFF4065 at 27.352 kb on - strand, within GFF4065 at 27.478 kb on - strand, within GFF4065
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 24,269 + GFF4062 0.37 +1.3 24,270 - GFF4062 0.37 -0.4 24,270 - GFF4062 0.37 +0.2 24,302 + GFF4062 0.44 +0.2 24,829 - GFF4063 0.29 +1.2 25,156 - +0.8 25,322 + GFF4064 0.10 +0.2 25,327 + GFF4064 0.11 -0.1 25,611 + GFF4064 0.32 -0.3 25,724 - GFF4064 0.40 +0.2 25,753 + GFF4064 0.43 +0.3 25,754 - GFF4064 0.43 -0.4 25,780 + GFF4064 0.45 +0.7 26,009 + GFF4064 0.62 +0.1 26,009 + GFF4064 0.62 +0.3 26,009 + GFF4064 0.62 +1.6 26,010 - GFF4064 0.62 -0.2 26,043 - GFF4064 0.64 -1.6 26,052 - GFF4064 0.65 +0.0 26,052 - GFF4064 0.65 +0.3 26,165 + GFF4064 0.73 -0.1 26,165 + GFF4064 0.73 +0.2 26,399 + +0.2 26,399 + -0.3 26,400 - -0.5 26,400 - +0.1 26,402 + -0.5 26,469 - -0.1 26,589 + -0.2 26,831 + GFF4065 0.24 -1.0 26,832 - GFF4065 0.24 +0.5 26,873 + GFF4065 0.27 -0.1 26,889 + GFF4065 0.28 +0.2 27,051 - GFF4065 0.41 -0.1 27,060 + GFF4065 0.41 +0.1 27,065 - GFF4065 0.42 -0.0 27,136 - GFF4065 0.47 -0.5 27,307 + GFF4065 0.60 +0.4 27,351 + GFF4065 0.64 -0.1 27,352 - GFF4065 0.64 -0.1 27,352 - GFF4065 0.64 +0.3 27,478 - GFF4065 0.73 -0.2
Or see this region's nucleotide sequence