Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2949 and GFF2950 overlap by 4 nucleotides GFF2950 and GFF2951 are separated by 248 nucleotides GFF2951 and GFF2952 are separated by 74 nucleotides GFF2952 and GFF2953 overlap by 4 nucleotides
GFF2949 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 28,284 to 29,138
GFF2949
GFF2950 - Phosphocarrier protein, nitrogen regulation associated, at 29,135 to 29,407
GFF2950
GFF2951 - Putative uncharacterized protein YrbL, at 29,656 to 30,288
GFF2951
GFF2952 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 30,363 to 31,091
GFF2952
GFF2953 - Sigma cross-reacting protein 27A, at 31,088 to 31,741
GFF2953
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1 at 28.771 kb on + strand, within GFF2949 at 28.966 kb on + strand, within GFF2949 at 29.002 kb on - strand, within GFF2949 at 29.002 kb on - strand, within GFF2949 at 29.049 kb on + strand, within GFF2949 at 29.552 kb on + strand at 29.704 kb on - strand at 29.711 kb on - strand at 29.712 kb on + strand at 29.712 kb on + strand at 29.742 kb on - strand, within GFF2951 at 29.752 kb on + strand, within GFF2951 at 29.800 kb on + strand, within GFF2951 at 29.800 kb on + strand, within GFF2951 at 29.804 kb on - strand, within GFF2951 at 29.931 kb on + strand, within GFF2951 at 30.013 kb on + strand, within GFF2951 at 30.030 kb on + strand, within GFF2951 at 30.031 kb on - strand, within GFF2951 at 30.126 kb on + strand, within GFF2951 at 30.301 kb on - strand at 30.368 kb on + strand at 30.369 kb on - strand at 30.369 kb on - strand at 30.386 kb on + strand at 30.423 kb on - strand at 30.449 kb on - strand, within GFF2952 at 30.543 kb on - strand, within GFF2952 at 30.543 kb on - strand, within GFF2952 at 31.042 kb on - strand at 31.048 kb on - strand at 31.119 kb on - strand at 31.165 kb on + strand, within GFF2953 at 31.167 kb on + strand, within GFF2953 at 31.211 kb on - strand, within GFF2953 at 31.230 kb on - strand, within GFF2953 at 31.230 kb on - strand, within GFF2953 at 31.283 kb on + strand, within GFF2953
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 28,771 + GFF2949 0.57 +0.5 28,966 + GFF2949 0.80 -0.4 29,002 - GFF2949 0.84 +0.2 29,002 - GFF2949 0.84 -0.8 29,049 + GFF2949 0.89 +0.2 29,552 + +0.2 29,704 - +0.2 29,711 - -0.1 29,712 + +0.2 29,712 + +0.3 29,742 - GFF2951 0.14 +0.1 29,752 + GFF2951 0.15 -0.2 29,800 + GFF2951 0.23 +0.4 29,800 + GFF2951 0.23 +0.2 29,804 - GFF2951 0.23 +0.5 29,931 + GFF2951 0.43 +0.6 30,013 + GFF2951 0.56 +0.1 30,030 + GFF2951 0.59 +0.6 30,031 - GFF2951 0.59 +0.4 30,126 + GFF2951 0.74 +0.2 30,301 - -0.1 30,368 + +0.2 30,369 - +0.0 30,369 - -0.0 30,386 + -0.4 30,423 - -0.3 30,449 - GFF2952 0.12 -0.0 30,543 - GFF2952 0.25 +0.7 30,543 - GFF2952 0.25 +0.1 31,042 - -0.1 31,048 - +0.4 31,119 - +0.4 31,165 + GFF2953 0.12 -0.6 31,167 + GFF2953 0.12 -0.9 31,211 - GFF2953 0.19 -0.1 31,230 - GFF2953 0.22 +0.1 31,230 - GFF2953 0.22 +0.5 31,283 + GFF2953 0.30 +0.1
Or see this region's nucleotide sequence