Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.723.1 and Xcc-8004.724.1 are separated by 82 nucleotides Xcc-8004.724.1 and Xcc-8004.726.1 are separated by 563 nucleotides
Xcc-8004.723.1: Xcc-8004.723.1 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 672,362 to 675,175
Xcc-8004.723.1
Xcc-8004.724.1: Xcc-8004.724.1 - putative; ORF located using Glimmer/Genemark, at 675,258 to 676,799
Xcc-8004.724.1
Xcc-8004.726.1: Xcc-8004.726.1 - Putative preQ0 transporter, at 677,363 to 677,920
Xcc-8004.726.1
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1
2 at 674.432 kb on + strand, within Xcc-8004.723.1 at 674.634 kb on - strand, within Xcc-8004.723.1 at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.290 kb on - strand at 675.326 kb on - strand at 675.330 kb on + strand at 675.396 kb on - strand at 675.396 kb on - strand at 675.396 kb on - strand at 675.421 kb on + strand, within Xcc-8004.724.1 at 675.422 kb on - strand, within Xcc-8004.724.1 at 675.424 kb on - strand, within Xcc-8004.724.1 at 675.453 kb on + strand, within Xcc-8004.724.1 at 675.454 kb on - strand, within Xcc-8004.724.1 at 675.614 kb on + strand, within Xcc-8004.724.1 at 675.615 kb on - strand, within Xcc-8004.724.1 at 675.875 kb on - strand, within Xcc-8004.724.1 at 675.953 kb on + strand, within Xcc-8004.724.1 at 675.953 kb on + strand, within Xcc-8004.724.1 at 676.067 kb on + strand, within Xcc-8004.724.1 at 676.067 kb on + strand, within Xcc-8004.724.1 at 676.068 kb on - strand, within Xcc-8004.724.1 at 676.068 kb on - strand, within Xcc-8004.724.1 at 676.146 kb on - strand, within Xcc-8004.724.1 at 676.176 kb on - strand, within Xcc-8004.724.1 at 676.520 kb on - strand, within Xcc-8004.724.1 at 676.520 kb on - strand, within Xcc-8004.724.1 at 676.601 kb on + strand, within Xcc-8004.724.1 at 676.811 kb on + strand at 676.811 kb on + strand at 676.864 kb on + strand at 676.877 kb on - strand at 676.890 kb on + strand at 676.891 kb on - strand at 676.891 kb on - strand at 676.891 kb on - strand at 676.894 kb on + strand at 676.894 kb on + strand at 676.895 kb on - strand at 676.895 kb on - strand at 676.895 kb on - strand at 676.897 kb on + strand at 676.915 kb on - strand at 677.046 kb on + strand at 677.080 kb on - strand at 677.153 kb on - strand at 677.153 kb on - strand at 677.163 kb on + strand at 677.163 kb on + strand at 677.256 kb on + strand at 677.328 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 674,432 + Xcc-8004.723.1 0.74 +0.2 674,634 - Xcc-8004.723.1 0.81 -0.3 675,289 + -0.3 675,289 + +0.9 675,289 + -1.9 675,289 + +0.6 675,289 + +0.3 675,290 - +0.7 675,326 - -0.0 675,330 + +0.3 675,396 - -0.4 675,396 - -0.1 675,396 - -0.0 675,421 + Xcc-8004.724.1 0.11 +0.1 675,422 - Xcc-8004.724.1 0.11 +0.5 675,424 - Xcc-8004.724.1 0.11 +0.7 675,453 + Xcc-8004.724.1 0.13 -0.4 675,454 - Xcc-8004.724.1 0.13 +1.0 675,614 + Xcc-8004.724.1 0.23 -0.6 675,615 - Xcc-8004.724.1 0.23 +1.1 675,875 - Xcc-8004.724.1 0.40 +0.5 675,953 + Xcc-8004.724.1 0.45 +0.3 675,953 + Xcc-8004.724.1 0.45 -0.6 676,067 + Xcc-8004.724.1 0.52 +0.1 676,067 + Xcc-8004.724.1 0.52 +0.3 676,068 - Xcc-8004.724.1 0.53 +0.4 676,068 - Xcc-8004.724.1 0.53 -1.6 676,146 - Xcc-8004.724.1 0.58 -0.3 676,176 - Xcc-8004.724.1 0.60 +2.2 676,520 - Xcc-8004.724.1 0.82 +0.7 676,520 - Xcc-8004.724.1 0.82 +0.2 676,601 + Xcc-8004.724.1 0.87 +0.2 676,811 + +0.6 676,811 + +0.2 676,864 + -1.7 676,877 - -0.2 676,890 + -0.6 676,891 - +0.8 676,891 - +0.2 676,891 - -0.2 676,894 + -0.9 676,894 + -0.4 676,895 - +0.8 676,895 - -0.4 676,895 - +0.9 676,897 + +0.1 676,915 - +0.1 677,046 + +0.3 677,080 - +0.5 677,153 - +1.7 677,153 - -0.0 677,163 + +0.4 677,163 + -0.2 677,256 + +1.1 677,328 + +1.5
Or see this region's nucleotide sequence