Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5239.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,975,051	+				-0.6
4,975,051	+				-0.5
4,975,051	+				+0.2
4,975,051	+				-0.5
4,975,052	-				-0.3
4,975,052	-				+0.7
4,975,204	+		Xcc-8004.5238.1	0.19	-0.6
4,975,204	+		Xcc-8004.5238.1	0.19	+0.2
4,975,205	-		Xcc-8004.5238.1	0.19	+1.3
4,975,205	-		Xcc-8004.5238.1	0.19	+0.4
4,975,258	+		Xcc-8004.5238.1	0.24	+0.7
4,975,258	+		Xcc-8004.5238.1	0.24	-0.8
4,975,258	+		Xcc-8004.5238.1	0.24	-0.3
4,975,259	-		Xcc-8004.5238.1	0.24	+0.1
4,975,442	-		Xcc-8004.5238.1	0.43	-1.5
4,975,442	-		Xcc-8004.5238.1	0.43	+0.1
4,975,442	-		Xcc-8004.5238.1	0.43	+0.2
4,975,774	+		Xcc-8004.5238.1	0.76	-2.2
4,975,774	+		Xcc-8004.5238.1	0.76	-0.4
4,975,874	+		Xcc-8004.5238.1	0.86	-0.6
4,976,117	-				+0.1
4,976,149	+				-1.0
4,976,149	+				+1.1
4,976,149	+				+0.2
4,976,149	+				-0.2
4,976,150	-				-0.5
4,976,150	-				+0.3
4,976,150	-				-1.0
4,976,546	-		Xcc-8004.5239.1	0.35	+0.1
4,976,752	+		Xcc-8004.5239.1	0.48	-0.5
4,976,752	+		Xcc-8004.5239.1	0.48	-1.9
4,976,752	+		Xcc-8004.5239.1	0.48	-0.4
4,976,752	+		Xcc-8004.5239.1	0.48	+0.1
4,976,753	-		Xcc-8004.5239.1	0.48	-0.5
4,977,074	-		Xcc-8004.5239.1	0.69	+1.0
4,977,133	+		Xcc-8004.5239.1	0.73	+2.1
4,977,134	-		Xcc-8004.5239.1	0.73	-0.2
4,977,161	-		Xcc-8004.5239.1	0.75	-0.9
4,977,239	-		Xcc-8004.5239.1	0.80	+0.2
4,977,393	+				-1.8
4,977,393	+				-0.3
4,977,448	+				+0.2
4,977,449	-				-0.5
4,977,639	+				-0.2
4,977,639	+				+0.3
4,977,820	+				-0.9
4,977,820	+				-0.1
4,977,820	+				-0.3
4,977,821	-				+0.8
4,977,821	-				-0.8
4,977,828	+				+1.1
4,977,852	+				+0.2
4,978,421	-		Xcc-8004.5240.1	0.21	-0.5