Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5235.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5233.1 and Xcc-8004.5235.1 are separated by 51 nucleotidesXcc-8004.5235.1 and Xcc-8004.5236.1 are separated by 104 nucleotides Xcc-8004.5232.1: Xcc-8004.5232.1 - hypothetical protein, at 4,967,980 to 4,968,309 Xcc-8004.5232.1 Xcc-8004.5233.1: Xcc-8004.5233.1 - hypothetical protein, at 4,968,267 to 4,969,223 Xcc-8004.5233.1 Xcc-8004.5235.1: Xcc-8004.5235.1 - Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8), at 4,969,275 to 4,970,468 Xcc-8004.5235.1 Xcc-8004.5236.1: Xcc-8004.5236.1 - Beta-galactosidase (EC 3.2.1.23), at 4,970,573 to 4,973,464 Xcc-8004.5236.1 Position (kb) 4969 4970 4971Strain fitness (log2 ratio) -2 -1 0 1at 4968.288 kb on + strandat 4968.288 kb on + strandat 4968.288 kb on + strandat 4968.289 kb on - strandat 4968.289 kb on - strandat 4968.290 kb on + strandat 4968.291 kb on - strandat 4968.312 kb on + strandat 4968.312 kb on + strandat 4968.312 kb on + strandat 4968.313 kb on - strandat 4968.313 kb on - strandat 4968.313 kb on - strandat 4968.400 kb on + strand, within Xcc-8004.5233.1at 4968.400 kb on + strand, within Xcc-8004.5233.1at 4968.401 kb on - strand, within Xcc-8004.5233.1at 4968.410 kb on + strand, within Xcc-8004.5233.1at 4968.412 kb on + strand, within Xcc-8004.5233.1at 4968.412 kb on + strand, within Xcc-8004.5233.1at 4968.452 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.480 kb on + strand, within Xcc-8004.5233.1at 4968.481 kb on - strand, within Xcc-8004.5233.1at 4968.481 kb on - strand, within Xcc-8004.5233.1at 4968.582 kb on + strand, within Xcc-8004.5233.1at 4968.599 kb on + strand, within Xcc-8004.5233.1at 4968.600 kb on - strand, within Xcc-8004.5233.1at 4968.631 kb on + strand, within Xcc-8004.5233.1at 4968.631 kb on + strand, within Xcc-8004.5233.1at 4968.665 kb on + strand, within Xcc-8004.5233.1at 4968.666 kb on - strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.678 kb on + strand, within Xcc-8004.5233.1at 4968.679 kb on - strand, within Xcc-8004.5233.1at 4968.679 kb on - strand, within Xcc-8004.5233.1at 4968.679 kb on - strand, within Xcc-8004.5233.1at 4968.679 kb on - strand, within Xcc-8004.5233.1at 4968.731 kb on + strand, within Xcc-8004.5233.1at 4968.731 kb on + strand, within Xcc-8004.5233.1at 4968.735 kb on + strand, within Xcc-8004.5233.1at 4968.736 kb on - strand, within Xcc-8004.5233.1at 4968.741 kb on + strand, within Xcc-8004.5233.1at 4968.903 kb on + strand, within Xcc-8004.5233.1at 4968.980 kb on - strand, within Xcc-8004.5233.1at 4969.062 kb on + strand, within Xcc-8004.5233.1at 4969.135 kb on + strandat 4969.135 kb on + strandat 4969.135 kb on + strandat 4969.138 kb on + strandat 4969.138 kb on + strandat 4969.138 kb on + strandat 4969.221 kb on + strandat 4969.237 kb on + strandat 4969.261 kb on - strandat 4969.492 kb on + strand, within Xcc-8004.5235.1at 4969.503 kb on + strand, within Xcc-8004.5235.1at 4969.504 kb on - strand, within Xcc-8004.5235.1at 4969.504 kb on - strand, within Xcc-8004.5235.1at 4969.504 kb on - strand, within Xcc-8004.5235.1at 4969.681 kb on + strand, within Xcc-8004.5235.1at 4969.681 kb on + strand, within Xcc-8004.5235.1at 4969.682 kb on - strand, within Xcc-8004.5235.1at 4969.721 kb on - strand, within Xcc-8004.5235.1at 4969.844 kb on - strand, within Xcc-8004.5235.1at 4969.844 kb on - strand, within Xcc-8004.5235.1at 4969.844 kb on - strand, within Xcc-8004.5235.1at 4969.846 kb on + strand, within Xcc-8004.5235.1at 4969.846 kb on + strand, within Xcc-8004.5235.1at 4969.847 kb on - strand, within Xcc-8004.5235.1at 4969.847 kb on - strand, within Xcc-8004.5235.1at 4969.847 kb on - strand, within Xcc-8004.5235.1at 4969.868 kb on - strand, within Xcc-8004.5235.1at 4969.945 kb on + strand, within Xcc-8004.5235.1at 4970.006 kb on - strand, within Xcc-8004.5235.1at 4970.126 kb on + strand, within Xcc-8004.5235.1at 4970.126 kb on + strand, within Xcc-8004.5235.1at 4970.126 kb on + strand, within Xcc-8004.5235.1at 4970.127 kb on - strand, within Xcc-8004.5235.1at 4970.127 kb on - strand, within Xcc-8004.5235.1at 4970.312 kb on + strand, within Xcc-8004.5235.1at 4970.347 kb on + strand, within Xcc-8004.5235.1at 4970.348 kb on - strand, within Xcc-8004.5235.1at 4970.348 kb on - strand, within Xcc-8004.5235.1at 4970.540 kb on + strandat 4970.541 kb on - strandat 4970.988 kb on + strand, within Xcc-8004.5236.1at 4970.989 kb on - strand, within Xcc-8004.5236.1at 4971.186 kb on + strand, within Xcc-8004.5236.1at 4971.186 kb on + strand, within Xcc-8004.5236.1at 4971.187 kb on - strand, within Xcc-8004.5236.1at 4971.187 kb on - strand, within Xcc-8004.5236.1at 4971.187 kb on - strand, within Xcc-8004.5236.1at 4971.196 kb on - strand, within Xcc-8004.5236.1at 4971.238 kb on - strand, within Xcc-8004.5236.1at 4971.238 kb on - strand, within Xcc-8004.5236.1at 4971.238 kb on - strand, within Xcc-8004.5236.1at 4971.256 kb on - strand, within Xcc-8004.5236.1at 4971.256 kb on - strand, within Xcc-8004.5236.1at 4971.256 kb on - strand, within Xcc-8004.5236.1at 4971.259 kb on - strand, within Xcc-8004.5236.1at 4971.279 kb on + strand, within Xcc-8004.5236.1at 4971.280 kb on - strand, within Xcc-8004.5236.1at 4971.384 kb on + strand, within Xcc-8004.5236.1at 4971.384 kb on + strand, within Xcc-8004.5236.1at 4971.384 kb on + strand, within Xcc-8004.5236.1at 4971.385 kb on - strand, within Xcc-8004.5236.1at 4971.385 kb on - strand, within Xcc-8004.5236.1at 4971.385 kb on - strand, within Xcc-8004.5236.1at 4971.385 kb on - strand, within Xcc-8004.5236.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,968,288 + -1.6
4,968,288 + +0.5
4,968,288 + +0.6
4,968,289 - +0.4
4,968,289 - -1.7
4,968,290 + -1.5
4,968,291 - -0.4
4,968,312 + +1.1
4,968,312 + +0.1
4,968,312 + -0.0
4,968,313 - +0.6
4,968,313 - +0.1
4,968,313 - +0.8
4,968,400 + Xcc-8004.5233.1 0.14 +0.7
4,968,400 + Xcc-8004.5233.1 0.14 -0.5
4,968,401 - Xcc-8004.5233.1 0.14 +0.4
4,968,410 + Xcc-8004.5233.1 0.15 +0.3
4,968,412 + Xcc-8004.5233.1 0.15 +0.4
4,968,412 + Xcc-8004.5233.1 0.15 -1.3
4,968,452 + Xcc-8004.5233.1 0.19 -1.7
4,968,480 + Xcc-8004.5233.1 0.22 -0.3
4,968,480 + Xcc-8004.5233.1 0.22 -0.2
4,968,480 + Xcc-8004.5233.1 0.22 +1.1
4,968,480 + Xcc-8004.5233.1 0.22 +0.1
4,968,480 + Xcc-8004.5233.1 0.22 +0.5
4,968,481 - Xcc-8004.5233.1 0.22 +0.5
4,968,481 - Xcc-8004.5233.1 0.22 +0.2
4,968,582 + Xcc-8004.5233.1 0.33 +0.2
4,968,599 + Xcc-8004.5233.1 0.35 +0.6
4,968,600 - Xcc-8004.5233.1 0.35 -0.3
4,968,631 + Xcc-8004.5233.1 0.38 -0.2
4,968,631 + Xcc-8004.5233.1 0.38 +0.1
4,968,665 + Xcc-8004.5233.1 0.42 +0.7
4,968,666 - Xcc-8004.5233.1 0.42 +0.4
4,968,678 + Xcc-8004.5233.1 0.43 -1.2
4,968,678 + Xcc-8004.5233.1 0.43 +0.8
4,968,678 + Xcc-8004.5233.1 0.43 -2.3
4,968,678 + Xcc-8004.5233.1 0.43 -1.1
4,968,678 + Xcc-8004.5233.1 0.43 -0.9
4,968,678 + Xcc-8004.5233.1 0.43 +0.3
4,968,679 - Xcc-8004.5233.1 0.43 -0.2
4,968,679 - Xcc-8004.5233.1 0.43 +0.4
4,968,679 - Xcc-8004.5233.1 0.43 -1.2
4,968,679 - Xcc-8004.5233.1 0.43 -1.1
4,968,731 + Xcc-8004.5233.1 0.48 -1.3
4,968,731 + Xcc-8004.5233.1 0.48 -0.4
4,968,735 + Xcc-8004.5233.1 0.49 -0.6
4,968,736 - Xcc-8004.5233.1 0.49 -1.1
4,968,741 + Xcc-8004.5233.1 0.50 +0.4
4,968,903 + Xcc-8004.5233.1 0.66 +0.5
4,968,980 - Xcc-8004.5233.1 0.75 -0.9
4,969,062 + Xcc-8004.5233.1 0.83 -0.8
4,969,135 + -0.6
4,969,135 + -0.6
4,969,135 + -0.3
4,969,138 + -0.4
4,969,138 + +0.4
4,969,138 + -0.7
4,969,221 + -1.0
4,969,237 + -0.0
4,969,261 - -0.3
4,969,492 + Xcc-8004.5235.1 0.18 +0.0
4,969,503 + Xcc-8004.5235.1 0.19 +0.0
4,969,504 - Xcc-8004.5235.1 0.19 -1.0
4,969,504 - Xcc-8004.5235.1 0.19 +0.7
4,969,504 - Xcc-8004.5235.1 0.19 +0.7
4,969,681 + Xcc-8004.5235.1 0.34 -0.2
4,969,681 + Xcc-8004.5235.1 0.34 -1.0
4,969,682 - Xcc-8004.5235.1 0.34 -0.5
4,969,721 - Xcc-8004.5235.1 0.37 -0.3
4,969,844 - Xcc-8004.5235.1 0.48 +1.1
4,969,844 - Xcc-8004.5235.1 0.48 -0.1
4,969,844 - Xcc-8004.5235.1 0.48 -0.3
4,969,846 + Xcc-8004.5235.1 0.48 +0.5
4,969,846 + Xcc-8004.5235.1 0.48 +0.9
4,969,847 - Xcc-8004.5235.1 0.48 +0.4
4,969,847 - Xcc-8004.5235.1 0.48 -0.7
4,969,847 - Xcc-8004.5235.1 0.48 +0.8
4,969,868 - Xcc-8004.5235.1 0.50 +0.1
4,969,945 + Xcc-8004.5235.1 0.56 +0.1
4,970,006 - Xcc-8004.5235.1 0.61 +0.1
4,970,126 + Xcc-8004.5235.1 0.71 +0.1
4,970,126 + Xcc-8004.5235.1 0.71 -0.1
4,970,126 + Xcc-8004.5235.1 0.71 +0.1
4,970,127 - Xcc-8004.5235.1 0.71 +0.4
4,970,127 - Xcc-8004.5235.1 0.71 +0.7
4,970,312 + Xcc-8004.5235.1 0.87 -0.7
4,970,347 + Xcc-8004.5235.1 0.90 -1.2
4,970,348 - Xcc-8004.5235.1 0.90 -0.6
4,970,348 - Xcc-8004.5235.1 0.90 +0.6
4,970,540 + -0.1
4,970,541 - +0.8
4,970,988 + Xcc-8004.5236.1 0.14 +0.1
4,970,989 - Xcc-8004.5236.1 0.14 +0.0
4,971,186 + Xcc-8004.5236.1 0.21 -0.2
4,971,186 + Xcc-8004.5236.1 0.21 +1.1
4,971,187 - Xcc-8004.5236.1 0.21 +0.0
4,971,187 - Xcc-8004.5236.1 0.21 -1.3
4,971,187 - Xcc-8004.5236.1 0.21 -1.7
4,971,196 - Xcc-8004.5236.1 0.22 +0.3
4,971,238 - Xcc-8004.5236.1 0.23 -1.0
4,971,238 - Xcc-8004.5236.1 0.23 -0.2
4,971,238 - Xcc-8004.5236.1 0.23 -1.1
4,971,256 - Xcc-8004.5236.1 0.24 +0.4
4,971,256 - Xcc-8004.5236.1 0.24 -0.3
4,971,256 - Xcc-8004.5236.1 0.24 -0.1
4,971,259 - Xcc-8004.5236.1 0.24 -0.4
4,971,279 + Xcc-8004.5236.1 0.24 -0.2
4,971,280 - Xcc-8004.5236.1 0.24 -0.2
4,971,384 + Xcc-8004.5236.1 0.28 +0.2
4,971,384 + Xcc-8004.5236.1 0.28 -0.9
4,971,384 + Xcc-8004.5236.1 0.28 -1.0
4,971,385 - Xcc-8004.5236.1 0.28 -0.3
4,971,385 - Xcc-8004.5236.1 0.28 +1.3
4,971,385 - Xcc-8004.5236.1 0.28 +1.1
4,971,385 - Xcc-8004.5236.1 0.28 +0.5

Or see this region's nucleotide sequence