Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4453.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,268,887	-				-0.8
4,268,894	-				-0.9
4,268,956	+				-0.3
4,268,956	+				+0.1
4,268,956	+				-0.4
4,268,956	+				+0.9
4,268,956	+				-0.2
4,268,957	-				-0.3
4,268,976	-				-0.0
4,269,023	-		Xcc-8004.4452.1	0.31	-0.5
4,269,458	+				-0.2
4,269,458	+				+0.0
4,269,458	+				+0.5
4,269,458	+				-1.8
4,269,459	-				-0.8
4,269,459	-				-0.4
4,269,462	+				-0.8
4,269,462	+				-0.0
4,269,462	+				-0.7
4,269,462	+				+0.3
4,269,463	-				-0.2
4,269,464	+				-0.1
4,269,543	-		Xcc-8004.4453.1	0.13	+0.3
4,269,543	-		Xcc-8004.4453.1	0.13	-0.8
4,269,558	-		Xcc-8004.4453.1	0.15	+1.1
4,269,666	-		Xcc-8004.4453.1	0.24	-0.9
4,269,672	+		Xcc-8004.4453.1	0.25	-0.2
4,269,696	-		Xcc-8004.4453.1	0.27	+0.9
4,269,704	+		Xcc-8004.4453.1	0.27	-0.6
4,269,878	+		Xcc-8004.4453.1	0.43	+0.4
4,269,878	+		Xcc-8004.4453.1	0.43	+0.7
4,269,878	+		Xcc-8004.4453.1	0.43	+0.1
4,269,878	+		Xcc-8004.4453.1	0.43	-0.6
4,269,879	-		Xcc-8004.4453.1	0.43	-0.2
4,269,879	-		Xcc-8004.4453.1	0.43	-1.0
4,270,031	+		Xcc-8004.4453.1	0.56	-0.8
4,270,248	-		Xcc-8004.4453.1	0.75	+0.1
4,270,358	+		Xcc-8004.4453.1	0.85	-0.4
4,270,358	+		Xcc-8004.4453.1	0.85	+0.2
4,270,359	-		Xcc-8004.4453.1	0.85	-0.4
4,270,359	-		Xcc-8004.4453.1	0.85	-0.4
4,270,359	-		Xcc-8004.4453.1	0.85	-0.4
4,270,359	-		Xcc-8004.4453.1	0.85	+2.7
4,270,666	+				-0.6
4,270,666	+				+1.7
4,270,667	-				-1.0
4,270,667	-				-0.6
4,270,667	-				+0.8
4,270,675	+				-0.4
4,270,716	+				+1.0
4,270,716	+				-1.7
4,270,772	+				+0.6
4,270,772	+				-0.9
4,270,773	-				-0.8
4,270,838	+				+0.4
4,270,838	+				+0.3
4,270,838	+				-1.1
4,270,839	-				+0.6
4,270,839	-				+0.0
4,270,839	-				+0.8
4,270,839	-				-0.0
4,270,839	-				+1.5
4,270,839	-				-0.2
4,270,839	-				+1.0
4,270,839	-				-0.2
4,270,839	-				+0.4
4,270,839	-				+0.1
4,270,842	+				-0.8
4,270,842	+				-0.6
4,270,843	-				+0.7
4,270,843	-				+0.2
4,270,869	+				+0.5
4,270,938	-		Xcc-8004.4454.1	0.15	+1.5
4,271,045	+		Xcc-8004.4454.1	0.24	-0.5
4,271,046	-		Xcc-8004.4454.1	0.24	+0.7
4,271,052	+		Xcc-8004.4454.1	0.25	+0.3
4,271,052	+		Xcc-8004.4454.1	0.25	-1.0
4,271,053	-		Xcc-8004.4454.1	0.25	-0.4
4,271,053	-		Xcc-8004.4454.1	0.25	+0.6
4,271,075	+		Xcc-8004.4454.1	0.27	+0.1
4,271,075	+		Xcc-8004.4454.1	0.27	+1.1
4,271,075	+		Xcc-8004.4454.1	0.27	+2.0
4,271,076	-		Xcc-8004.4454.1	0.27	+1.7
4,271,076	-		Xcc-8004.4454.1	0.27	-0.3
4,271,084	+		Xcc-8004.4454.1	0.28	-0.6
4,271,085	-		Xcc-8004.4454.1	0.28	+0.1
4,271,085	-		Xcc-8004.4454.1	0.28	+0.4
4,271,085	-		Xcc-8004.4454.1	0.28	-1.5
4,271,258	+		Xcc-8004.4454.1	0.43	-0.0
4,271,259	-		Xcc-8004.4454.1	0.43	-1.3
4,271,259	-		Xcc-8004.4454.1	0.43	-0.4
4,271,522	+		Xcc-8004.4454.1	0.66	-0.6
4,271,522	+		Xcc-8004.4454.1	0.66	+0.3
4,271,522	+		Xcc-8004.4454.1	0.66	+0.7
4,271,523	-		Xcc-8004.4454.1	0.66	+0.5
4,271,529	-		Xcc-8004.4454.1	0.67	+0.2
4,271,529	-		Xcc-8004.4454.1	0.67	+0.1