Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3274.1 and Xcc-8004.3276.1 are separated by 345 nucleotides Xcc-8004.3276.1 and Xcc-8004.3277.1 are separated by 292 nucleotides
Xcc-8004.3274.1: Xcc-8004.3274.1 - phage-related integrase, at 3,175,451 to 3,176,917
Xcc-8004.3274.1
Xcc-8004.3276.1: Xcc-8004.3276.1 - Transcriptional regulator, LysR family, at 3,177,263 to 3,178,267
Xcc-8004.3276.1
Xcc-8004.3277.1: Xcc-8004.3277.1 - Seryl-tRNA synthetase (EC 6.1.1.11), at 3,178,560 to 3,179,840
Xcc-8004.3277.1
Position (kb) 3177
3178
3179 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3176.355 kb on + strand, within Xcc-8004.3274.1 at 3176.355 kb on + strand, within Xcc-8004.3274.1 at 3176.355 kb on + strand, within Xcc-8004.3274.1 at 3176.355 kb on + strand, within Xcc-8004.3274.1 at 3176.355 kb on + strand, within Xcc-8004.3274.1 at 3176.355 kb on + strand, within Xcc-8004.3274.1 at 3176.355 kb on + strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.356 kb on - strand, within Xcc-8004.3274.1 at 3176.452 kb on + strand, within Xcc-8004.3274.1 at 3176.452 kb on + strand, within Xcc-8004.3274.1 at 3176.452 kb on + strand, within Xcc-8004.3274.1 at 3176.452 kb on + strand, within Xcc-8004.3274.1 at 3176.452 kb on + strand, within Xcc-8004.3274.1 at 3176.453 kb on - strand, within Xcc-8004.3274.1 at 3176.453 kb on - strand, within Xcc-8004.3274.1 at 3176.453 kb on - strand, within Xcc-8004.3274.1 at 3176.453 kb on - strand, within Xcc-8004.3274.1 at 3176.453 kb on - strand, within Xcc-8004.3274.1 at 3176.453 kb on - strand, within Xcc-8004.3274.1 at 3176.453 kb on - strand, within Xcc-8004.3274.1 at 3176.453 kb on - strand, within Xcc-8004.3274.1 at 3176.560 kb on - strand, within Xcc-8004.3274.1 at 3176.560 kb on - strand, within Xcc-8004.3274.1 at 3176.560 kb on - strand, within Xcc-8004.3274.1 at 3176.560 kb on - strand, within Xcc-8004.3274.1 at 3176.560 kb on - strand, within Xcc-8004.3274.1 at 3176.748 kb on + strand, within Xcc-8004.3274.1 at 3176.748 kb on + strand, within Xcc-8004.3274.1 at 3176.749 kb on - strand, within Xcc-8004.3274.1 at 3176.959 kb on - strand at 3177.550 kb on + strand, within Xcc-8004.3276.1 at 3177.550 kb on + strand, within Xcc-8004.3276.1 at 3177.550 kb on + strand, within Xcc-8004.3276.1 at 3177.551 kb on - strand, within Xcc-8004.3276.1 at 3177.551 kb on - strand, within Xcc-8004.3276.1 at 3177.551 kb on - strand, within Xcc-8004.3276.1 at 3177.551 kb on - strand, within Xcc-8004.3276.1 at 3177.551 kb on - strand, within Xcc-8004.3276.1 at 3177.750 kb on + strand, within Xcc-8004.3276.1 at 3177.750 kb on + strand, within Xcc-8004.3276.1 at 3177.750 kb on + strand, within Xcc-8004.3276.1 at 3177.750 kb on + strand, within Xcc-8004.3276.1 at 3177.750 kb on + strand, within Xcc-8004.3276.1 at 3177.750 kb on + strand, within Xcc-8004.3276.1 at 3177.750 kb on + strand, within Xcc-8004.3276.1 at 3177.751 kb on - strand, within Xcc-8004.3276.1 at 3177.751 kb on - strand, within Xcc-8004.3276.1 at 3177.751 kb on - strand, within Xcc-8004.3276.1 at 3177.852 kb on + strand, within Xcc-8004.3276.1 at 3177.852 kb on + strand, within Xcc-8004.3276.1 at 3177.852 kb on + strand, within Xcc-8004.3276.1 at 3177.852 kb on + strand, within Xcc-8004.3276.1 at 3177.853 kb on - strand, within Xcc-8004.3276.1 at 3177.853 kb on - strand, within Xcc-8004.3276.1 at 3177.853 kb on - strand, within Xcc-8004.3276.1 at 3177.853 kb on - strand, within Xcc-8004.3276.1 at 3177.916 kb on - strand, within Xcc-8004.3276.1 at 3177.919 kb on + strand, within Xcc-8004.3276.1 at 3177.919 kb on + strand, within Xcc-8004.3276.1 at 3177.919 kb on + strand, within Xcc-8004.3276.1 at 3177.920 kb on - strand, within Xcc-8004.3276.1 at 3177.920 kb on - strand, within Xcc-8004.3276.1 at 3177.920 kb on - strand, within Xcc-8004.3276.1 at 3177.920 kb on - strand, within Xcc-8004.3276.1 at 3177.980 kb on - strand, within Xcc-8004.3276.1 at 3178.022 kb on + strand, within Xcc-8004.3276.1 at 3178.022 kb on + strand, within Xcc-8004.3276.1 at 3178.022 kb on + strand, within Xcc-8004.3276.1 at 3178.022 kb on + strand, within Xcc-8004.3276.1 at 3178.022 kb on + strand, within Xcc-8004.3276.1 at 3178.023 kb on - strand, within Xcc-8004.3276.1 at 3178.023 kb on - strand, within Xcc-8004.3276.1 at 3178.023 kb on - strand, within Xcc-8004.3276.1 at 3178.242 kb on + strand at 3178.242 kb on + strand at 3178.242 kb on + strand at 3178.242 kb on + strand at 3178.242 kb on + strand at 3178.242 kb on + strand at 3178.243 kb on - strand at 3178.243 kb on - strand at 3178.243 kb on - strand at 3178.243 kb on - strand at 3178.243 kb on - strand at 3178.245 kb on + strand at 3178.245 kb on + strand at 3178.245 kb on + strand at 3178.245 kb on + strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.246 kb on - strand at 3178.404 kb on + strand at 3178.404 kb on + strand at 3178.497 kb on + strand at 3178.497 kb on + strand at 3178.498 kb on - strand at 3178.498 kb on - strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.504 kb on + strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.505 kb on - strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.508 kb on + strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand at 3178.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 3,176,355 + Xcc-8004.3274.1 0.62 +0.3 3,176,355 + Xcc-8004.3274.1 0.62 +0.6 3,176,355 + Xcc-8004.3274.1 0.62 -0.6 3,176,355 + Xcc-8004.3274.1 0.62 -1.3 3,176,355 + Xcc-8004.3274.1 0.62 -0.4 3,176,355 + Xcc-8004.3274.1 0.62 +3.3 3,176,355 + Xcc-8004.3274.1 0.62 -1.1 3,176,356 - Xcc-8004.3274.1 0.62 +0.2 3,176,356 - Xcc-8004.3274.1 0.62 +0.1 3,176,356 - Xcc-8004.3274.1 0.62 +2.3 3,176,356 - Xcc-8004.3274.1 0.62 +2.4 3,176,356 - Xcc-8004.3274.1 0.62 +0.6 3,176,356 - Xcc-8004.3274.1 0.62 -0.4 3,176,356 - Xcc-8004.3274.1 0.62 +0.5 3,176,356 - Xcc-8004.3274.1 0.62 +0.3 3,176,356 - Xcc-8004.3274.1 0.62 -0.7 3,176,356 - Xcc-8004.3274.1 0.62 +0.0 3,176,356 - Xcc-8004.3274.1 0.62 -0.4 3,176,356 - Xcc-8004.3274.1 0.62 +0.9 3,176,356 - Xcc-8004.3274.1 0.62 +1.3 3,176,356 - Xcc-8004.3274.1 0.62 -0.3 3,176,452 + Xcc-8004.3274.1 0.68 +0.7 3,176,452 + Xcc-8004.3274.1 0.68 +0.4 3,176,452 + Xcc-8004.3274.1 0.68 -0.1 3,176,452 + Xcc-8004.3274.1 0.68 -0.6 3,176,452 + Xcc-8004.3274.1 0.68 -1.2 3,176,453 - Xcc-8004.3274.1 0.68 -0.7 3,176,453 - Xcc-8004.3274.1 0.68 -0.2 3,176,453 - Xcc-8004.3274.1 0.68 -0.4 3,176,453 - Xcc-8004.3274.1 0.68 -0.1 3,176,453 - Xcc-8004.3274.1 0.68 -0.2 3,176,453 - Xcc-8004.3274.1 0.68 -0.1 3,176,453 - Xcc-8004.3274.1 0.68 +0.6 3,176,453 - Xcc-8004.3274.1 0.68 +0.7 3,176,560 - Xcc-8004.3274.1 0.76 -2.0 3,176,560 - Xcc-8004.3274.1 0.76 -1.8 3,176,560 - Xcc-8004.3274.1 0.76 -0.3 3,176,560 - Xcc-8004.3274.1 0.76 +1.3 3,176,560 - Xcc-8004.3274.1 0.76 -0.4 3,176,748 + Xcc-8004.3274.1 0.88 +0.7 3,176,748 + Xcc-8004.3274.1 0.88 +0.7 3,176,749 - Xcc-8004.3274.1 0.88 -0.3 3,176,959 - +0.4 3,177,550 + Xcc-8004.3276.1 0.29 -1.1 3,177,550 + Xcc-8004.3276.1 0.29 -0.3 3,177,550 + Xcc-8004.3276.1 0.29 -1.4 3,177,551 - Xcc-8004.3276.1 0.29 -1.3 3,177,551 - Xcc-8004.3276.1 0.29 -2.6 3,177,551 - Xcc-8004.3276.1 0.29 -2.1 3,177,551 - Xcc-8004.3276.1 0.29 -1.2 3,177,551 - Xcc-8004.3276.1 0.29 -0.7 3,177,750 + Xcc-8004.3276.1 0.48 -0.8 3,177,750 + Xcc-8004.3276.1 0.48 -2.0 3,177,750 + Xcc-8004.3276.1 0.48 -0.7 3,177,750 + Xcc-8004.3276.1 0.48 -2.2 3,177,750 + Xcc-8004.3276.1 0.48 -2.4 3,177,750 + Xcc-8004.3276.1 0.48 +0.4 3,177,750 + Xcc-8004.3276.1 0.48 -0.7 3,177,751 - Xcc-8004.3276.1 0.49 -0.3 3,177,751 - Xcc-8004.3276.1 0.49 -3.2 3,177,751 - Xcc-8004.3276.1 0.49 -1.2 3,177,852 + Xcc-8004.3276.1 0.59 +0.6 3,177,852 + Xcc-8004.3276.1 0.59 -0.1 3,177,852 + Xcc-8004.3276.1 0.59 -0.6 3,177,852 + Xcc-8004.3276.1 0.59 -1.8 3,177,853 - Xcc-8004.3276.1 0.59 -0.1 3,177,853 - Xcc-8004.3276.1 0.59 -2.7 3,177,853 - Xcc-8004.3276.1 0.59 -2.9 3,177,853 - Xcc-8004.3276.1 0.59 -2.4 3,177,916 - Xcc-8004.3276.1 0.65 +0.3 3,177,919 + Xcc-8004.3276.1 0.65 -1.7 3,177,919 + Xcc-8004.3276.1 0.65 -1.4 3,177,919 + Xcc-8004.3276.1 0.65 -2.2 3,177,920 - Xcc-8004.3276.1 0.65 -1.1 3,177,920 - Xcc-8004.3276.1 0.65 -3.1 3,177,920 - Xcc-8004.3276.1 0.65 -1.2 3,177,920 - Xcc-8004.3276.1 0.65 -1.6 3,177,980 - Xcc-8004.3276.1 0.71 -1.5 3,178,022 + Xcc-8004.3276.1 0.76 -1.1 3,178,022 + Xcc-8004.3276.1 0.76 -1.0 3,178,022 + Xcc-8004.3276.1 0.76 -1.5 3,178,022 + Xcc-8004.3276.1 0.76 -0.8 3,178,022 + Xcc-8004.3276.1 0.76 -1.7 3,178,023 - Xcc-8004.3276.1 0.76 -1.4 3,178,023 - Xcc-8004.3276.1 0.76 -3.8 3,178,023 - Xcc-8004.3276.1 0.76 -2.3 3,178,242 + -2.7 3,178,242 + -1.2 3,178,242 + -3.1 3,178,242 + -2.0 3,178,242 + -2.8 3,178,242 + -0.3 3,178,243 - -2.8 3,178,243 - -0.6 3,178,243 - -1.3 3,178,243 - +0.7 3,178,243 - -3.3 3,178,245 + -0.8 3,178,245 + -2.7 3,178,245 + -2.3 3,178,245 + +0.3 3,178,246 - +0.2 3,178,246 - -0.7 3,178,246 - +0.2 3,178,246 - -1.3 3,178,246 - -0.5 3,178,246 - -1.1 3,178,246 - -3.4 3,178,246 - -0.1 3,178,246 - -2.7 3,178,246 - -2.0 3,178,404 + -0.4 3,178,404 + -0.5 3,178,497 + -0.3 3,178,497 + -1.3 3,178,498 - -0.8 3,178,498 - +0.7 3,178,504 + -0.3 3,178,504 + -0.9 3,178,504 + -0.5 3,178,504 + +0.5 3,178,504 + -0.1 3,178,504 + -0.5 3,178,504 + -0.0 3,178,504 + -0.4 3,178,504 + +0.2 3,178,504 + -0.4 3,178,504 + +1.2 3,178,504 + +0.2 3,178,504 + -0.2 3,178,504 + +0.2 3,178,504 + +0.2 3,178,505 - +0.3 3,178,505 - +0.1 3,178,505 - -0.3 3,178,505 - -0.1 3,178,505 - -0.2 3,178,505 - +0.3 3,178,505 - +1.2 3,178,505 - +0.0 3,178,505 - -2.3 3,178,505 - -1.2 3,178,505 - -1.2 3,178,505 - +0.5 3,178,508 + -0.9 3,178,508 + +0.0 3,178,508 + +0.0 3,178,508 + +0.2 3,178,508 + +0.2 3,178,508 + -1.6 3,178,508 + +0.7 3,178,508 + +0.7 3,178,508 + +0.3 3,178,508 + -0.1 3,178,508 + -0.4 3,178,508 + +0.4 3,178,508 + -1.9 3,178,508 + +0.7 3,178,508 + -0.6 3,178,508 + +0.3 3,178,508 + -0.2 3,178,508 + -0.1 3,178,508 + -0.4 3,178,508 + -0.5 3,178,508 + -0.0 3,178,508 + +0.3 3,178,508 + +0.1 3,178,508 + -0.5 3,178,508 + -0.8 3,178,509 - +0.2 3,178,509 - -0.2 3,178,509 - -0.0 3,178,509 - -1.5 3,178,509 - -0.4 3,178,509 - +1.1 3,178,509 - +0.6 3,178,509 - -0.4 3,178,509 - -0.4 3,178,509 - -0.8 3,178,509 - -1.2 3,178,509 - +0.5 3,178,509 - +0.6 3,178,509 - +0.6 3,178,509 - +0.2 3,178,509 - +0.7 3,178,509 - -0.6 3,178,509 - -0.0 3,178,509 - +0.4 3,178,509 - +1.0 3,178,509 - +0.7 3,178,509 - -0.3 3,178,509 - +0.6 3,178,509 - -0.0 3,178,509 - +0.6 3,178,509 - -0.2 3,178,509 - -0.2
Or see this region's nucleotide sequence