Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2956.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2954.1 and Xcc-8004.2955.1 are separated by 161 nucleotidesXcc-8004.2955.1 and Xcc-8004.2956.1 are separated by 68 nucleotidesXcc-8004.2956.1 and Xcc-8004.2957.1 overlap by 4 nucleotides Xcc-8004.2954.1: Xcc-8004.2954.1 - Threonine synthase (EC 4.2.3.1), at 2,877,529 to 2,878,836 Xcc-8004.2954.1 Xcc-8004.2955.1: Xcc-8004.2955.1 - FIG01209826: hypothetical protein, at 2,878,998 to 2,879,312 Xcc-8004.2955.1 Xcc-8004.2956.1: Xcc-8004.2956.1 - Homoserine kinase (EC 2.7.1.39), at 2,879,381 to 2,880,349 Xcc-8004.2956.1 Xcc-8004.2957.1: Xcc-8004.2957.1 - Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3), at 2,880,346 to 2,882,853 Xcc-8004.2957.1 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2878.565 kb on + strand, within Xcc-8004.2954.1at 2878.565 kb on + strand, within Xcc-8004.2954.1at 2878.566 kb on - strand, within Xcc-8004.2954.1at 2878.748 kb on + strandat 2878.748 kb on + strandat 2878.748 kb on + strandat 2878.748 kb on + strandat 2878.748 kb on + strandat 2878.748 kb on + strandat 2878.748 kb on + strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.749 kb on - strandat 2878.821 kb on + strandat 2878.821 kb on + strandat 2878.822 kb on - strandat 2878.965 kb on + strandat 2878.965 kb on + strandat 2878.965 kb on + strandat 2878.966 kb on - strandat 2878.966 kb on - strandat 2879.019 kb on + strandat 2879.019 kb on + strandat 2879.019 kb on + strandat 2879.019 kb on + strandat 2879.020 kb on - strandat 2879.055 kb on + strand, within Xcc-8004.2955.1at 2879.055 kb on + strand, within Xcc-8004.2955.1at 2879.056 kb on - strand, within Xcc-8004.2955.1at 2879.056 kb on - strand, within Xcc-8004.2955.1at 2879.056 kb on - strand, within Xcc-8004.2955.1at 2879.056 kb on - strand, within Xcc-8004.2955.1at 2879.056 kb on - strand, within Xcc-8004.2955.1at 2879.056 kb on - strand, within Xcc-8004.2955.1at 2879.056 kb on - strand, within Xcc-8004.2955.1at 2879.056 kb on - strand, within Xcc-8004.2955.1at 2879.058 kb on + strand, within Xcc-8004.2955.1at 2879.058 kb on + strand, within Xcc-8004.2955.1at 2879.058 kb on + strand, within Xcc-8004.2955.1at 2879.058 kb on + strand, within Xcc-8004.2955.1at 2879.058 kb on + strand, within Xcc-8004.2955.1at 2879.058 kb on + strand, within Xcc-8004.2955.1at 2879.058 kb on + strand, within Xcc-8004.2955.1at 2879.058 kb on + strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.059 kb on - strand, within Xcc-8004.2955.1at 2879.115 kb on + strand, within Xcc-8004.2955.1at 2879.115 kb on + strand, within Xcc-8004.2955.1at 2879.115 kb on + strand, within Xcc-8004.2955.1at 2879.115 kb on + strand, within Xcc-8004.2955.1at 2879.115 kb on + strand, within Xcc-8004.2955.1at 2879.115 kb on + strand, within Xcc-8004.2955.1at 2879.116 kb on - strand, within Xcc-8004.2955.1at 2879.116 kb on - strand, within Xcc-8004.2955.1at 2879.116 kb on - strand, within Xcc-8004.2955.1at 2879.116 kb on - strand, within Xcc-8004.2955.1at 2879.116 kb on - strand, within Xcc-8004.2955.1at 2879.166 kb on + strand, within Xcc-8004.2955.1at 2879.166 kb on + strand, within Xcc-8004.2955.1at 2879.166 kb on + strand, within Xcc-8004.2955.1at 2879.166 kb on + strand, within Xcc-8004.2955.1at 2879.167 kb on - strand, within Xcc-8004.2955.1at 2879.167 kb on - strand, within Xcc-8004.2955.1at 2879.167 kb on - strand, within Xcc-8004.2955.1at 2879.167 kb on - strand, within Xcc-8004.2955.1at 2879.167 kb on - strand, within Xcc-8004.2955.1at 2879.262 kb on + strand, within Xcc-8004.2955.1at 2879.262 kb on + strand, within Xcc-8004.2955.1at 2879.262 kb on + strand, within Xcc-8004.2955.1at 2879.263 kb on - strand, within Xcc-8004.2955.1at 2879.263 kb on - strand, within Xcc-8004.2955.1at 2879.263 kb on - strand, within Xcc-8004.2955.1at 2879.263 kb on - strand, within Xcc-8004.2955.1at 2879.263 kb on - strand, within Xcc-8004.2955.1at 2879.540 kb on - strand, within Xcc-8004.2956.1at 2879.540 kb on - strand, within Xcc-8004.2956.1at 2879.934 kb on + strand, within Xcc-8004.2956.1at 2880.458 kb on + strandat 2880.578 kb on + strandat 2880.578 kb on + strandat 2880.578 kb on + strandat 2880.579 kb on - strandat 2880.579 kb on - strandat 2880.579 kb on - strandat 2880.579 kb on - strandat 2880.815 kb on + strand, within Xcc-8004.2957.1at 2880.816 kb on - strand, within Xcc-8004.2957.1at 2880.816 kb on - strand, within Xcc-8004.2957.1at 2880.869 kb on + strand, within Xcc-8004.2957.1at 2880.869 kb on + strand, within Xcc-8004.2957.1at 2880.870 kb on - strand, within Xcc-8004.2957.1at 2880.873 kb on + strand, within Xcc-8004.2957.1at 2880.873 kb on + strand, within Xcc-8004.2957.1at 2880.874 kb on - strand, within Xcc-8004.2957.1at 2880.874 kb on - strand, within Xcc-8004.2957.1at 2881.043 kb on + strand, within Xcc-8004.2957.1at 2881.164 kb on + strand, within Xcc-8004.2957.1at 2881.164 kb on + strand, within Xcc-8004.2957.1at 2881.164 kb on + strand, within Xcc-8004.2957.1at 2881.165 kb on - strand, within Xcc-8004.2957.1at 2881.165 kb on - strand, within Xcc-8004.2957.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,878,565 + Xcc-8004.2954.1 0.79 -1.4
2,878,565 + Xcc-8004.2954.1 0.79 -1.1
2,878,566 - Xcc-8004.2954.1 0.79 -2.4
2,878,748 + -2.7
2,878,748 + -1.9
2,878,748 + -2.7
2,878,748 + -1.5
2,878,748 + -2.8
2,878,748 + -1.3
2,878,748 + -3.2
2,878,749 - -2.9
2,878,749 - -2.7
2,878,749 - -1.2
2,878,749 - -0.4
2,878,749 - -0.6
2,878,749 - -1.0
2,878,749 - -2.0
2,878,749 - -1.4
2,878,749 - -1.6
2,878,749 - -2.4
2,878,749 - -1.3
2,878,749 - -2.9
2,878,821 + -1.3
2,878,821 + -3.9
2,878,822 - -0.9
2,878,965 + -0.2
2,878,965 + -0.6
2,878,965 + +0.9
2,878,966 - +0.7
2,878,966 - -1.2
2,879,019 + +0.2
2,879,019 + -1.1
2,879,019 + +0.0
2,879,019 + +1.5
2,879,020 - +0.9
2,879,055 + Xcc-8004.2955.1 0.18 -0.6
2,879,055 + Xcc-8004.2955.1 0.18 -0.4
2,879,056 - Xcc-8004.2955.1 0.18 -0.2
2,879,056 - Xcc-8004.2955.1 0.18 -0.4
2,879,056 - Xcc-8004.2955.1 0.18 -2.8
2,879,056 - Xcc-8004.2955.1 0.18 +1.0
2,879,056 - Xcc-8004.2955.1 0.18 +0.4
2,879,056 - Xcc-8004.2955.1 0.18 +0.5
2,879,056 - Xcc-8004.2955.1 0.18 -1.4
2,879,056 - Xcc-8004.2955.1 0.18 -0.1
2,879,058 + Xcc-8004.2955.1 0.19 -1.5
2,879,058 + Xcc-8004.2955.1 0.19 -0.4
2,879,058 + Xcc-8004.2955.1 0.19 +0.7
2,879,058 + Xcc-8004.2955.1 0.19 +0.7
2,879,058 + Xcc-8004.2955.1 0.19 -0.4
2,879,058 + Xcc-8004.2955.1 0.19 +0.7
2,879,058 + Xcc-8004.2955.1 0.19 -1.9
2,879,058 + Xcc-8004.2955.1 0.19 -1.7
2,879,059 - Xcc-8004.2955.1 0.19 -0.1
2,879,059 - Xcc-8004.2955.1 0.19 -1.4
2,879,059 - Xcc-8004.2955.1 0.19 +0.1
2,879,059 - Xcc-8004.2955.1 0.19 +1.5
2,879,059 - Xcc-8004.2955.1 0.19 -0.3
2,879,059 - Xcc-8004.2955.1 0.19 -0.5
2,879,059 - Xcc-8004.2955.1 0.19 -0.8
2,879,059 - Xcc-8004.2955.1 0.19 -0.6
2,879,059 - Xcc-8004.2955.1 0.19 +0.4
2,879,115 + Xcc-8004.2955.1 0.37 +0.2
2,879,115 + Xcc-8004.2955.1 0.37 +0.2
2,879,115 + Xcc-8004.2955.1 0.37 -0.4
2,879,115 + Xcc-8004.2955.1 0.37 +0.7
2,879,115 + Xcc-8004.2955.1 0.37 +0.0
2,879,115 + Xcc-8004.2955.1 0.37 +0.2
2,879,116 - Xcc-8004.2955.1 0.37 +0.5
2,879,116 - Xcc-8004.2955.1 0.37 -0.8
2,879,116 - Xcc-8004.2955.1 0.37 +0.1
2,879,116 - Xcc-8004.2955.1 0.37 +0.3
2,879,116 - Xcc-8004.2955.1 0.37 -0.1
2,879,166 + Xcc-8004.2955.1 0.53 +0.5
2,879,166 + Xcc-8004.2955.1 0.53 -1.4
2,879,166 + Xcc-8004.2955.1 0.53 -2.4
2,879,166 + Xcc-8004.2955.1 0.53 -0.6
2,879,167 - Xcc-8004.2955.1 0.54 -0.8
2,879,167 - Xcc-8004.2955.1 0.54 -0.1
2,879,167 - Xcc-8004.2955.1 0.54 +0.3
2,879,167 - Xcc-8004.2955.1 0.54 -1.1
2,879,167 - Xcc-8004.2955.1 0.54 +0.6
2,879,262 + Xcc-8004.2955.1 0.84 +0.1
2,879,262 + Xcc-8004.2955.1 0.84 -0.5
2,879,262 + Xcc-8004.2955.1 0.84 -1.4
2,879,263 - Xcc-8004.2955.1 0.84 +0.4
2,879,263 - Xcc-8004.2955.1 0.84 -0.4
2,879,263 - Xcc-8004.2955.1 0.84 -0.5
2,879,263 - Xcc-8004.2955.1 0.84 -0.0
2,879,263 - Xcc-8004.2955.1 0.84 -0.8
2,879,540 - Xcc-8004.2956.1 0.16 -1.8
2,879,540 - Xcc-8004.2956.1 0.16 -2.2
2,879,934 + Xcc-8004.2956.1 0.57 -3.6
2,880,458 + +0.1
2,880,578 + +0.7
2,880,578 + +0.4
2,880,578 + -2.1
2,880,579 - -1.9
2,880,579 - -0.9
2,880,579 - +0.7
2,880,579 - -2.0
2,880,815 + Xcc-8004.2957.1 0.19 -2.3
2,880,816 - Xcc-8004.2957.1 0.19 -1.8
2,880,816 - Xcc-8004.2957.1 0.19 -2.4
2,880,869 + Xcc-8004.2957.1 0.21 -1.1
2,880,869 + Xcc-8004.2957.1 0.21 -1.7
2,880,870 - Xcc-8004.2957.1 0.21 -1.9
2,880,873 + Xcc-8004.2957.1 0.21 -2.3
2,880,873 + Xcc-8004.2957.1 0.21 -1.3
2,880,874 - Xcc-8004.2957.1 0.21 -0.7
2,880,874 - Xcc-8004.2957.1 0.21 -4.1
2,881,043 + Xcc-8004.2957.1 0.28 -3.0
2,881,164 + Xcc-8004.2957.1 0.33 -2.8
2,881,164 + Xcc-8004.2957.1 0.33 -2.8
2,881,164 + Xcc-8004.2957.1 0.33 -2.7
2,881,165 - Xcc-8004.2957.1 0.33 -0.9
2,881,165 - Xcc-8004.2957.1 0.33 -3.1

Or see this region's nucleotide sequence