Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2322.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2320.1 and Xcc-8004.2321.1 are separated by 5 nucleotidesXcc-8004.2321.1 and Xcc-8004.2322.1 overlap by 4 nucleotidesXcc-8004.2322.1 and Xcc-8004.2323.1 are separated by 75 nucleotides Xcc-8004.2320.1: Xcc-8004.2320.1 - Acetylglutamate kinase (EC 2.7.2.8), at 2,267,246 to 2,268,589 Xcc-8004.2320.1 Xcc-8004.2321.1: Xcc-8004.2321.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 2,268,595 to 2,269,206 Xcc-8004.2321.1 Xcc-8004.2322.1: Xcc-8004.2322.1 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 2,269,203 to 2,270,153 Xcc-8004.2322.1 Xcc-8004.2323.1: Xcc-8004.2323.1 - Argininosuccinate lyase (EC 4.3.2.1), at 2,270,229 to 2,271,524 Xcc-8004.2323.1 Position (kb) 2269 2270 2271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2268.225 kb on - strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.255 kb on - strand, within Xcc-8004.2320.1at 2268.255 kb on - strand, within Xcc-8004.2320.1at 2268.269 kb on + strand, within Xcc-8004.2320.1at 2268.326 kb on + strand, within Xcc-8004.2320.1at 2268.327 kb on - strand, within Xcc-8004.2320.1at 2268.327 kb on - strand, within Xcc-8004.2320.1at 2268.458 kb on + strandat 2268.458 kb on + strandat 2268.459 kb on - strandat 2268.461 kb on + strandat 2268.736 kb on + strand, within Xcc-8004.2321.1at 2268.772 kb on + strand, within Xcc-8004.2321.1at 2268.772 kb on + strand, within Xcc-8004.2321.1at 2268.773 kb on - strand, within Xcc-8004.2321.1at 2268.866 kb on - strand, within Xcc-8004.2321.1at 2268.866 kb on - strand, within Xcc-8004.2321.1at 2268.868 kb on + strand, within Xcc-8004.2321.1at 2268.868 kb on + strand, within Xcc-8004.2321.1at 2268.868 kb on + strand, within Xcc-8004.2321.1at 2268.869 kb on - strand, within Xcc-8004.2321.1at 2269.359 kb on + strand, within Xcc-8004.2322.1at 2269.360 kb on - strand, within Xcc-8004.2322.1at 2269.360 kb on - strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.543 kb on - strand, within Xcc-8004.2322.1at 2269.543 kb on - strand, within Xcc-8004.2322.1at 2269.545 kb on + strand, within Xcc-8004.2322.1at 2269.545 kb on + strand, within Xcc-8004.2322.1at 2269.546 kb on - strand, within Xcc-8004.2322.1at 2269.546 kb on - strand, within Xcc-8004.2322.1at 2269.611 kb on + strand, within Xcc-8004.2322.1at 2269.611 kb on + strand, within Xcc-8004.2322.1at 2269.761 kb on + strand, within Xcc-8004.2322.1at 2269.932 kb on + strand, within Xcc-8004.2322.1at 2270.210 kb on + strandat 2270.331 kb on + strandat 2270.331 kb on + strandat 2270.331 kb on + strandat 2270.331 kb on + strandat 2270.331 kb on + strandat 2270.332 kb on - strandat 2270.332 kb on - strandat 2270.590 kb on + strand, within Xcc-8004.2323.1at 2270.590 kb on + strand, within Xcc-8004.2323.1at 2270.681 kb on - strand, within Xcc-8004.2323.1at 2270.695 kb on - strand, within Xcc-8004.2323.1at 2270.803 kb on + strand, within Xcc-8004.2323.1at 2270.804 kb on - strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2271.054 kb on + strand, within Xcc-8004.2323.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,268,225 - Xcc-8004.2320.1 0.73 -2.0
2,268,254 + Xcc-8004.2320.1 0.75 -2.4
2,268,254 + Xcc-8004.2320.1 0.75 -2.6
2,268,254 + Xcc-8004.2320.1 0.75 -2.8
2,268,254 + Xcc-8004.2320.1 0.75 -1.0
2,268,254 + Xcc-8004.2320.1 0.75 -2.4
2,268,255 - Xcc-8004.2320.1 0.75 -3.2
2,268,255 - Xcc-8004.2320.1 0.75 -1.7
2,268,269 + Xcc-8004.2320.1 0.76 -2.5
2,268,326 + Xcc-8004.2320.1 0.80 -2.0
2,268,327 - Xcc-8004.2320.1 0.80 -0.6
2,268,327 - Xcc-8004.2320.1 0.80 -2.7
2,268,458 + -1.3
2,268,458 + -1.9
2,268,459 - -1.7
2,268,461 + -0.6
2,268,736 + Xcc-8004.2321.1 0.23 +1.1
2,268,772 + Xcc-8004.2321.1 0.29 +1.3
2,268,772 + Xcc-8004.2321.1 0.29 -0.1
2,268,773 - Xcc-8004.2321.1 0.29 +0.1
2,268,866 - Xcc-8004.2321.1 0.44 -2.2
2,268,866 - Xcc-8004.2321.1 0.44 -1.4
2,268,868 + Xcc-8004.2321.1 0.45 +0.3
2,268,868 + Xcc-8004.2321.1 0.45 +0.1
2,268,868 + Xcc-8004.2321.1 0.45 -0.5
2,268,869 - Xcc-8004.2321.1 0.45 -0.1
2,269,359 + Xcc-8004.2322.1 0.16 -0.3
2,269,360 - Xcc-8004.2322.1 0.17 -1.6
2,269,360 - Xcc-8004.2322.1 0.17 -2.2
2,269,542 + Xcc-8004.2322.1 0.36 -3.0
2,269,542 + Xcc-8004.2322.1 0.36 -3.2
2,269,542 + Xcc-8004.2322.1 0.36 -2.4
2,269,543 - Xcc-8004.2322.1 0.36 -1.4
2,269,543 - Xcc-8004.2322.1 0.36 -4.2
2,269,545 + Xcc-8004.2322.1 0.36 -1.5
2,269,545 + Xcc-8004.2322.1 0.36 -1.6
2,269,546 - Xcc-8004.2322.1 0.36 -2.2
2,269,546 - Xcc-8004.2322.1 0.36 -1.7
2,269,611 + Xcc-8004.2322.1 0.43 -2.6
2,269,611 + Xcc-8004.2322.1 0.43 -2.2
2,269,761 + Xcc-8004.2322.1 0.59 -1.0
2,269,932 + Xcc-8004.2322.1 0.77 -2.3
2,270,210 + -0.5
2,270,331 + -2.2
2,270,331 + -2.0
2,270,331 + -1.4
2,270,331 + -2.1
2,270,331 + -1.2
2,270,332 - -2.8
2,270,332 - -2.9
2,270,590 + Xcc-8004.2323.1 0.28 -0.3
2,270,590 + Xcc-8004.2323.1 0.28 -1.6
2,270,681 - Xcc-8004.2323.1 0.35 -3.6
2,270,695 - Xcc-8004.2323.1 0.36 -1.4
2,270,803 + Xcc-8004.2323.1 0.44 +0.7
2,270,804 - Xcc-8004.2323.1 0.44 -2.2
2,270,913 + Xcc-8004.2323.1 0.53 -2.8
2,270,913 + Xcc-8004.2323.1 0.53 -3.7
2,270,913 + Xcc-8004.2323.1 0.53 -2.8
2,270,913 + Xcc-8004.2323.1 0.53 -1.1
2,270,913 + Xcc-8004.2323.1 0.53 -0.8
2,270,913 + Xcc-8004.2323.1 0.53 -1.8
2,270,914 - Xcc-8004.2323.1 0.53 -1.9
2,270,914 - Xcc-8004.2323.1 0.53 -3.6
2,270,914 - Xcc-8004.2323.1 0.53 -1.5
2,270,914 - Xcc-8004.2323.1 0.53 -2.3
2,271,054 + Xcc-8004.2323.1 0.64 -0.6

Or see this region's nucleotide sequence