Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1649.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1648.1 and Xcc-8004.1649.1 are separated by 179 nucleotidesXcc-8004.1649.1 and Xcc-8004.1650.1 are separated by 223 nucleotides Xcc-8004.1648.1: Xcc-8004.1648.1 - hypothetical protein, at 1,585,686 to 1,586,486 Xcc-8004.1648.1 Xcc-8004.1649.1: Xcc-8004.1649.1 - Pectate lyase precursor (EC 4.2.2.2), at 1,586,666 to 1,587,727 Xcc-8004.1649.1 Xcc-8004.1650.1: Xcc-8004.1650.1 - amino acid transporter, at 1,587,951 to 1,589,543 Xcc-8004.1650.1 Position (kb) 1586 1587 1588Strain fitness (log2 ratio) -2 -1 0 1 2at 1585.687 kb on + strandat 1585.687 kb on + strandat 1585.687 kb on + strandat 1585.688 kb on - strandat 1585.688 kb on - strandat 1585.688 kb on - strandat 1585.688 kb on - strandat 1585.688 kb on - strandat 1585.688 kb on - strandat 1585.691 kb on + strandat 1585.692 kb on - strandat 1585.692 kb on - strandat 1585.692 kb on - strandat 1585.692 kb on - strandat 1585.692 kb on - strandat 1585.796 kb on + strand, within Xcc-8004.1648.1at 1585.796 kb on + strand, within Xcc-8004.1648.1at 1585.796 kb on + strand, within Xcc-8004.1648.1at 1585.797 kb on - strand, within Xcc-8004.1648.1at 1585.797 kb on - strand, within Xcc-8004.1648.1at 1585.797 kb on - strand, within Xcc-8004.1648.1at 1585.897 kb on + strand, within Xcc-8004.1648.1at 1585.897 kb on + strand, within Xcc-8004.1648.1at 1585.897 kb on + strand, within Xcc-8004.1648.1at 1585.897 kb on + strand, within Xcc-8004.1648.1at 1585.897 kb on + strand, within Xcc-8004.1648.1at 1585.898 kb on - strand, within Xcc-8004.1648.1at 1585.898 kb on - strand, within Xcc-8004.1648.1at 1585.925 kb on + strand, within Xcc-8004.1648.1at 1585.925 kb on + strand, within Xcc-8004.1648.1at 1585.926 kb on - strand, within Xcc-8004.1648.1at 1585.938 kb on + strand, within Xcc-8004.1648.1at 1585.938 kb on + strand, within Xcc-8004.1648.1at 1585.939 kb on - strand, within Xcc-8004.1648.1at 1585.958 kb on + strand, within Xcc-8004.1648.1at 1585.965 kb on - strand, within Xcc-8004.1648.1at 1586.204 kb on + strand, within Xcc-8004.1648.1at 1586.250 kb on + strand, within Xcc-8004.1648.1at 1586.250 kb on + strand, within Xcc-8004.1648.1at 1586.250 kb on + strand, within Xcc-8004.1648.1at 1586.777 kb on - strand, within Xcc-8004.1649.1at 1586.831 kb on + strand, within Xcc-8004.1649.1at 1586.861 kb on + strand, within Xcc-8004.1649.1at 1586.862 kb on - strand, within Xcc-8004.1649.1at 1587.141 kb on + strand, within Xcc-8004.1649.1at 1587.206 kb on + strand, within Xcc-8004.1649.1at 1587.236 kb on + strand, within Xcc-8004.1649.1at 1587.236 kb on + strand, within Xcc-8004.1649.1at 1587.242 kb on + strand, within Xcc-8004.1649.1at 1587.242 kb on + strand, within Xcc-8004.1649.1at 1587.242 kb on + strand, within Xcc-8004.1649.1at 1587.243 kb on - strand, within Xcc-8004.1649.1at 1587.243 kb on - strand, within Xcc-8004.1649.1at 1587.243 kb on - strand, within Xcc-8004.1649.1at 1587.243 kb on - strand, within Xcc-8004.1649.1at 1587.243 kb on - strand, within Xcc-8004.1649.1at 1587.248 kb on + strand, within Xcc-8004.1649.1at 1587.255 kb on - strand, within Xcc-8004.1649.1at 1587.278 kb on + strand, within Xcc-8004.1649.1at 1587.320 kb on + strand, within Xcc-8004.1649.1at 1587.321 kb on - strand, within Xcc-8004.1649.1at 1587.321 kb on - strand, within Xcc-8004.1649.1at 1587.389 kb on + strand, within Xcc-8004.1649.1at 1587.390 kb on - strand, within Xcc-8004.1649.1at 1587.398 kb on + strand, within Xcc-8004.1649.1at 1587.398 kb on + strand, within Xcc-8004.1649.1at 1587.399 kb on - strand, within Xcc-8004.1649.1at 1587.399 kb on - strand, within Xcc-8004.1649.1at 1587.399 kb on - strand, within Xcc-8004.1649.1at 1587.432 kb on + strand, within Xcc-8004.1649.1at 1587.432 kb on + strand, within Xcc-8004.1649.1at 1587.432 kb on + strand, within Xcc-8004.1649.1at 1587.432 kb on + strand, within Xcc-8004.1649.1at 1587.433 kb on - strand, within Xcc-8004.1649.1at 1587.433 kb on - strand, within Xcc-8004.1649.1at 1587.542 kb on + strand, within Xcc-8004.1649.1at 1587.542 kb on + strand, within Xcc-8004.1649.1at 1587.542 kb on + strand, within Xcc-8004.1649.1at 1587.543 kb on - strand, within Xcc-8004.1649.1at 1587.543 kb on - strand, within Xcc-8004.1649.1at 1587.543 kb on - strand, within Xcc-8004.1649.1at 1587.543 kb on - strand, within Xcc-8004.1649.1at 1587.644 kb on + strandat 1587.645 kb on - strandat 1587.645 kb on - strandat 1587.651 kb on - strandat 1587.746 kb on + strandat 1587.746 kb on + strandat 1587.747 kb on - strandat 1587.747 kb on - strandat 1587.747 kb on - strandat 1587.836 kb on + strandat 1587.836 kb on + strandat 1587.836 kb on + strandat 1588.054 kb on + strandat 1588.335 kb on + strand, within Xcc-8004.1650.1at 1588.336 kb on - strand, within Xcc-8004.1650.1at 1588.425 kb on + strand, within Xcc-8004.1650.1at 1588.474 kb on + strand, within Xcc-8004.1650.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,585,687 + -0.8
1,585,687 + -0.4
1,585,687 + -0.3
1,585,688 - +0.1
1,585,688 - -0.8
1,585,688 - +1.5
1,585,688 - -1.2
1,585,688 - -0.4
1,585,688 - -0.3
1,585,691 + +1.4
1,585,692 - -1.1
1,585,692 - -0.9
1,585,692 - -0.4
1,585,692 - -0.2
1,585,692 - +0.6
1,585,796 + Xcc-8004.1648.1 0.14 -1.6
1,585,796 + Xcc-8004.1648.1 0.14 +2.1
1,585,796 + Xcc-8004.1648.1 0.14 +1.2
1,585,797 - Xcc-8004.1648.1 0.14 -0.6
1,585,797 - Xcc-8004.1648.1 0.14 +1.2
1,585,797 - Xcc-8004.1648.1 0.14 +0.8
1,585,897 + Xcc-8004.1648.1 0.26 -0.7
1,585,897 + Xcc-8004.1648.1 0.26 +0.0
1,585,897 + Xcc-8004.1648.1 0.26 -0.6
1,585,897 + Xcc-8004.1648.1 0.26 -0.2
1,585,897 + Xcc-8004.1648.1 0.26 -0.0
1,585,898 - Xcc-8004.1648.1 0.26 +0.5
1,585,898 - Xcc-8004.1648.1 0.26 +0.5
1,585,925 + Xcc-8004.1648.1 0.30 -0.9
1,585,925 + Xcc-8004.1648.1 0.30 +0.1
1,585,926 - Xcc-8004.1648.1 0.30 -1.4
1,585,938 + Xcc-8004.1648.1 0.31 +1.3
1,585,938 + Xcc-8004.1648.1 0.31 -0.4
1,585,939 - Xcc-8004.1648.1 0.32 -1.0
1,585,958 + Xcc-8004.1648.1 0.34 +0.6
1,585,965 - Xcc-8004.1648.1 0.35 -0.3
1,586,204 + Xcc-8004.1648.1 0.65 -0.1
1,586,250 + Xcc-8004.1648.1 0.70 +1.4
1,586,250 + Xcc-8004.1648.1 0.70 +0.4
1,586,250 + Xcc-8004.1648.1 0.70 +0.2
1,586,777 - Xcc-8004.1649.1 0.10 -0.2
1,586,831 + Xcc-8004.1649.1 0.16 -0.9
1,586,861 + Xcc-8004.1649.1 0.18 -0.0
1,586,862 - Xcc-8004.1649.1 0.18 -0.0
1,587,141 + Xcc-8004.1649.1 0.45 +0.3
1,587,206 + Xcc-8004.1649.1 0.51 +1.8
1,587,236 + Xcc-8004.1649.1 0.54 -0.2
1,587,236 + Xcc-8004.1649.1 0.54 -0.2
1,587,242 + Xcc-8004.1649.1 0.54 -1.5
1,587,242 + Xcc-8004.1649.1 0.54 -2.6
1,587,242 + Xcc-8004.1649.1 0.54 +0.1
1,587,243 - Xcc-8004.1649.1 0.54 +0.4
1,587,243 - Xcc-8004.1649.1 0.54 -0.8
1,587,243 - Xcc-8004.1649.1 0.54 -0.8
1,587,243 - Xcc-8004.1649.1 0.54 +0.7
1,587,243 - Xcc-8004.1649.1 0.54 +1.2
1,587,248 + Xcc-8004.1649.1 0.55 +1.2
1,587,255 - Xcc-8004.1649.1 0.55 -0.2
1,587,278 + Xcc-8004.1649.1 0.58 -2.1
1,587,320 + Xcc-8004.1649.1 0.62 +0.5
1,587,321 - Xcc-8004.1649.1 0.62 -0.3
1,587,321 - Xcc-8004.1649.1 0.62 -0.2
1,587,389 + Xcc-8004.1649.1 0.68 +0.5
1,587,390 - Xcc-8004.1649.1 0.68 +0.8
1,587,398 + Xcc-8004.1649.1 0.69 -0.7
1,587,398 + Xcc-8004.1649.1 0.69 -1.2
1,587,399 - Xcc-8004.1649.1 0.69 -0.0
1,587,399 - Xcc-8004.1649.1 0.69 -0.2
1,587,399 - Xcc-8004.1649.1 0.69 -0.6
1,587,432 + Xcc-8004.1649.1 0.72 -2.5
1,587,432 + Xcc-8004.1649.1 0.72 +1.4
1,587,432 + Xcc-8004.1649.1 0.72 +0.4
1,587,432 + Xcc-8004.1649.1 0.72 -0.4
1,587,433 - Xcc-8004.1649.1 0.72 -0.6
1,587,433 - Xcc-8004.1649.1 0.72 -0.0
1,587,542 + Xcc-8004.1649.1 0.82 +0.3
1,587,542 + Xcc-8004.1649.1 0.82 +0.9
1,587,542 + Xcc-8004.1649.1 0.82 +0.9
1,587,543 - Xcc-8004.1649.1 0.83 -0.2
1,587,543 - Xcc-8004.1649.1 0.83 -0.9
1,587,543 - Xcc-8004.1649.1 0.83 +0.9
1,587,543 - Xcc-8004.1649.1 0.83 -0.5
1,587,644 + -0.9
1,587,645 - +0.8
1,587,645 - -0.6
1,587,651 - -0.2
1,587,746 + -0.5
1,587,746 + +0.2
1,587,747 - +0.0
1,587,747 - -0.8
1,587,747 - +0.9
1,587,836 + -0.8
1,587,836 + +1.4
1,587,836 + +0.9
1,588,054 + -0.5
1,588,335 + Xcc-8004.1650.1 0.24 -0.3
1,588,336 - Xcc-8004.1650.1 0.24 +0.9
1,588,425 + Xcc-8004.1650.1 0.30 -2.1
1,588,474 + Xcc-8004.1650.1 0.33 -1.0

Or see this region's nucleotide sequence