Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.156.1 and Xcc-8004.157.1 are separated by 155 nucleotides Xcc-8004.157.1 and Xcc-8004.158.1 are separated by 286 nucleotides
Xcc-8004.156.1: Xcc-8004.156.1 - putative secreted protein, at 144,223 to 145,476
Xcc-8004.156.1
Xcc-8004.157.1: Xcc-8004.157.1 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 145,632 to 146,654
Xcc-8004.157.1
Xcc-8004.158.1: Xcc-8004.158.1 - N-acetylglucosamine-regulated TonB-dependent outer membrane receptor, at 146,941 to 149,709
Xcc-8004.158.1
Position (kb) 145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 144.704 kb on + strand, within Xcc-8004.156.1 at 144.704 kb on + strand, within Xcc-8004.156.1 at 145.250 kb on - strand, within Xcc-8004.156.1 at 145.250 kb on - strand, within Xcc-8004.156.1 at 145.406 kb on + strand at 145.406 kb on + strand at 145.407 kb on - strand at 145.407 kb on - strand at 145.407 kb on - strand at 145.407 kb on - strand at 145.423 kb on + strand at 145.424 kb on - strand at 145.424 kb on - strand at 145.424 kb on - strand at 145.424 kb on - strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.512 kb on + strand at 145.512 kb on + strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.543 kb on + strand at 145.543 kb on + strand at 145.543 kb on + strand at 145.544 kb on - strand at 145.722 kb on + strand at 145.723 kb on - strand at 145.723 kb on - strand at 145.835 kb on + strand, within Xcc-8004.157.1 at 145.835 kb on + strand, within Xcc-8004.157.1 at 145.836 kb on - strand, within Xcc-8004.157.1 at 145.919 kb on + strand, within Xcc-8004.157.1 at 146.146 kb on + strand, within Xcc-8004.157.1 at 146.146 kb on + strand, within Xcc-8004.157.1 at 146.147 kb on - strand, within Xcc-8004.157.1 at 146.147 kb on - strand, within Xcc-8004.157.1 at 146.293 kb on + strand, within Xcc-8004.157.1 at 146.293 kb on + strand, within Xcc-8004.157.1 at 146.294 kb on - strand, within Xcc-8004.157.1 at 146.338 kb on + strand, within Xcc-8004.157.1 at 146.338 kb on + strand, within Xcc-8004.157.1 at 146.338 kb on + strand, within Xcc-8004.157.1 at 146.339 kb on - strand, within Xcc-8004.157.1 at 146.339 kb on - strand, within Xcc-8004.157.1 at 146.339 kb on - strand, within Xcc-8004.157.1 at 146.339 kb on - strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.466 kb on + strand, within Xcc-8004.157.1 at 146.654 kb on + strand at 146.655 kb on - strand at 146.663 kb on + strand at 146.663 kb on + strand at 146.663 kb on + strand at 146.664 kb on - strand at 146.664 kb on - strand at 146.664 kb on - strand at 146.664 kb on - strand at 146.664 kb on - strand at 146.860 kb on - strand at 146.860 kb on - strand at 147.499 kb on + strand, within Xcc-8004.158.1 at 147.499 kb on + strand, within Xcc-8004.158.1 at 147.499 kb on + strand, within Xcc-8004.158.1 at 147.500 kb on - strand, within Xcc-8004.158.1 at 147.500 kb on - strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.635 kb on - strand, within Xcc-8004.158.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 144,704 + Xcc-8004.156.1 0.38 -0.7 144,704 + Xcc-8004.156.1 0.38 +0.2 145,250 - Xcc-8004.156.1 0.82 +0.6 145,250 - Xcc-8004.156.1 0.82 -0.4 145,406 + -2.0 145,406 + -0.6 145,407 - +0.4 145,407 - -0.9 145,407 - -1.4 145,407 - +0.2 145,423 + -0.6 145,424 - -0.5 145,424 - -0.0 145,424 - +0.2 145,424 - -0.8 145,508 + +0.3 145,508 + -0.8 145,508 + -1.8 145,508 + -0.1 145,508 + -0.3 145,508 + -0.0 145,508 + +0.6 145,508 + -0.7 145,508 + -0.1 145,508 + -0.0 145,508 + -0.7 145,508 + -0.0 145,508 + -0.0 145,508 + +0.0 145,509 - +0.4 145,509 - -0.6 145,509 - -0.4 145,509 - -0.9 145,509 - -0.3 145,509 - -0.6 145,509 - -0.8 145,509 - +0.5 145,509 - -2.1 145,509 - -1.2 145,509 - +0.9 145,509 - -1.5 145,509 - +0.1 145,509 - -0.7 145,509 - -0.6 145,512 + +0.7 145,512 + -1.8 145,513 - -0.4 145,513 - +0.8 145,513 - -0.9 145,513 - +0.4 145,513 - +0.4 145,513 - -0.3 145,513 - -1.0 145,513 - +0.1 145,543 + -1.5 145,543 + +0.6 145,543 + +0.7 145,544 - -0.4 145,722 + -1.6 145,723 - -1.0 145,723 - -2.9 145,835 + Xcc-8004.157.1 0.20 -1.2 145,835 + Xcc-8004.157.1 0.20 -0.6 145,836 - Xcc-8004.157.1 0.20 -4.1 145,919 + Xcc-8004.157.1 0.28 -2.6 146,146 + Xcc-8004.157.1 0.50 -1.5 146,146 + Xcc-8004.157.1 0.50 -1.1 146,147 - Xcc-8004.157.1 0.50 -2.4 146,147 - Xcc-8004.157.1 0.50 -1.6 146,293 + Xcc-8004.157.1 0.65 -1.1 146,293 + Xcc-8004.157.1 0.65 -2.1 146,294 - Xcc-8004.157.1 0.65 -3.1 146,338 + Xcc-8004.157.1 0.69 -1.3 146,338 + Xcc-8004.157.1 0.69 +0.4 146,338 + Xcc-8004.157.1 0.69 -2.2 146,339 - Xcc-8004.157.1 0.69 -0.7 146,339 - Xcc-8004.157.1 0.69 -3.1 146,339 - Xcc-8004.157.1 0.69 -1.6 146,339 - Xcc-8004.157.1 0.69 -2.6 146,383 + Xcc-8004.157.1 0.73 -1.6 146,383 + Xcc-8004.157.1 0.73 -0.6 146,383 + Xcc-8004.157.1 0.73 -3.3 146,383 + Xcc-8004.157.1 0.73 -2.8 146,383 + Xcc-8004.157.1 0.73 -2.1 146,383 + Xcc-8004.157.1 0.73 -1.1 146,383 + Xcc-8004.157.1 0.73 -2.3 146,383 + Xcc-8004.157.1 0.73 -2.8 146,383 + Xcc-8004.157.1 0.73 -3.5 146,383 + Xcc-8004.157.1 0.73 -3.1 146,383 + Xcc-8004.157.1 0.73 -1.0 146,383 + Xcc-8004.157.1 0.73 -1.2 146,384 - Xcc-8004.157.1 0.74 -2.7 146,384 - Xcc-8004.157.1 0.74 -3.4 146,384 - Xcc-8004.157.1 0.74 -0.6 146,384 - Xcc-8004.157.1 0.74 -3.9 146,384 - Xcc-8004.157.1 0.74 -2.2 146,384 - Xcc-8004.157.1 0.74 -1.9 146,466 + Xcc-8004.157.1 0.82 -2.2 146,654 + -2.3 146,655 - -1.0 146,663 + -3.4 146,663 + -2.2 146,663 + -3.7 146,664 - +0.4 146,664 - -3.0 146,664 - +0.5 146,664 - +0.9 146,664 - -1.7 146,860 - +1.7 146,860 - -1.2 147,499 + Xcc-8004.158.1 0.20 -0.5 147,499 + Xcc-8004.158.1 0.20 +0.1 147,499 + Xcc-8004.158.1 0.20 +0.4 147,500 - Xcc-8004.158.1 0.20 -0.1 147,500 - Xcc-8004.158.1 0.20 -0.3 147,634 + Xcc-8004.158.1 0.25 +1.0 147,634 + Xcc-8004.158.1 0.25 -0.2 147,634 + Xcc-8004.158.1 0.25 +0.3 147,634 + Xcc-8004.158.1 0.25 +0.3 147,634 + Xcc-8004.158.1 0.25 +0.0 147,635 - Xcc-8004.158.1 0.25 +0.1
Or see this region's nucleotide sequence