Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1211.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,145,880	+		Xcc-8004.1210.1	0.48	+1.7
1,145,881	-		Xcc-8004.1210.1	0.48	+0.6
1,145,910	+		Xcc-8004.1210.1	0.50	-0.1
1,145,910	+		Xcc-8004.1210.1	0.50	+1.4
1,145,911	-		Xcc-8004.1210.1	0.50	+0.7
1,145,911	-		Xcc-8004.1210.1	0.50	+0.3
1,145,911	-		Xcc-8004.1210.1	0.50	-0.0
1,145,911	-		Xcc-8004.1210.1	0.50	+0.5
1,145,948	+		Xcc-8004.1210.1	0.52	-0.2
1,146,350	+		Xcc-8004.1210.1	0.78	-0.1
1,146,351	-		Xcc-8004.1210.1	0.78	-0.2
1,146,368	+		Xcc-8004.1210.1	0.79	+0.4
1,146,369	-		Xcc-8004.1210.1	0.79	+0.6
1,146,369	-		Xcc-8004.1210.1	0.79	+0.4
1,146,369	-		Xcc-8004.1210.1	0.79	-0.1
1,146,369	-		Xcc-8004.1210.1	0.79	-0.4
1,146,595	+				-0.2
1,146,595	+				+0.8
1,146,596	-				+0.0
1,146,596	-				-0.1
1,146,596	-				+0.5
1,146,768	+				-0.3
1,146,768	+				+0.7
1,146,768	+				+0.7
1,146,769	-				-0.3
1,146,773	-				-0.1
1,146,830	+		Xcc-8004.1211.1	0.14	-1.8
1,146,861	-		Xcc-8004.1211.1	0.18	-0.8
1,146,891	-		Xcc-8004.1211.1	0.21	+0.5
1,146,926	+		Xcc-8004.1211.1	0.25	+1.2
1,146,926	+		Xcc-8004.1211.1	0.25	+0.1
1,146,927	-		Xcc-8004.1211.1	0.25	+0.9
1,146,927	-		Xcc-8004.1211.1	0.25	-0.6
1,146,927	-		Xcc-8004.1211.1	0.25	+0.3
1,146,927	-		Xcc-8004.1211.1	0.25	-0.8
1,146,975	-		Xcc-8004.1211.1	0.30	-1.2
1,146,975	-		Xcc-8004.1211.1	0.30	+0.2
1,146,975	-		Xcc-8004.1211.1	0.30	+0.1
1,146,975	-		Xcc-8004.1211.1	0.30	+0.2
1,146,999	-		Xcc-8004.1211.1	0.33	-0.4
1,147,041	-		Xcc-8004.1211.1	0.37	-2.5
1,147,041	-		Xcc-8004.1211.1	0.37	+0.0
1,147,068	-		Xcc-8004.1211.1	0.40	+0.1
1,147,068	-		Xcc-8004.1211.1	0.40	-0.8
1,147,071	+		Xcc-8004.1211.1	0.40	+0.0
1,147,071	+		Xcc-8004.1211.1	0.40	-0.2
1,147,071	+		Xcc-8004.1211.1	0.40	-1.9
1,147,072	-		Xcc-8004.1211.1	0.41	-0.2
1,147,072	-		Xcc-8004.1211.1	0.41	-0.7
1,147,072	-		Xcc-8004.1211.1	0.41	+0.2
1,147,087	+		Xcc-8004.1211.1	0.42	+0.9
1,147,087	+		Xcc-8004.1211.1	0.42	+1.6
1,147,088	-		Xcc-8004.1211.1	0.42	+0.2
1,147,088	-		Xcc-8004.1211.1	0.42	-0.0
1,147,109	+		Xcc-8004.1211.1	0.45	+0.7
1,147,109	+		Xcc-8004.1211.1	0.45	-0.5
1,147,110	-		Xcc-8004.1211.1	0.45	-0.3
1,147,110	-		Xcc-8004.1211.1	0.45	+0.3
1,147,265	+		Xcc-8004.1211.1	0.62	+0.4
1,147,604	+				-1.1
1,147,604	+				+0.2
1,147,604	+				+0.3
1,147,604	+				-0.9
1,147,604	+				-0.1
1,147,604	+				-0.1
1,147,605	-				-0.6
1,147,605	-				+0.6
1,147,605	-				+1.4
1,147,605	-				-0.7
1,147,605	-				-0.1
1,147,605	-				-0.5
1,147,605	-				+0.2
1,147,605	-				-0.3
1,147,605	-				-1.6
1,147,605	-				-0.1
1,147,632	+				-1.0
1,147,633	-				-0.8
1,147,653	+				+0.7
1,147,653	+				-0.3
1,147,653	+				-0.7
1,147,653	+				+0.2
1,147,653	+				+0.1
1,147,653	+				-0.4
1,147,653	+				+1.2
1,147,653	+				-0.2
1,147,654	-				-0.3
1,147,654	-				+0.6
1,147,654	-				+0.2
1,147,654	-				+0.2
1,147,654	-				-0.5
1,147,654	-				-0.6
1,147,691	+				-0.8
1,147,691	+				+1.5
1,147,705	+				-0.7
1,147,735	+				+0.1
1,147,735	+				-0.1
1,147,735	+				-0.1
1,147,735	+				-0.4
1,147,736	-				-0.2
1,147,736	-				-0.7
1,147,759	+				-0.3
1,147,760	-				+0.5
1,147,760	-				+0.3
1,147,760	-				+0.3
1,147,782	+				-0.6
1,147,783	-				+0.1
1,147,783	-				-0.7
1,147,783	-				+0.4
1,147,783	-				-0.7
1,147,783	-				+0.2
1,147,786	+				-0.5
1,147,786	+				-0.2
1,147,786	+				-0.6
1,147,787	-				-0.8
1,147,787	-				-1.6
1,147,787	-				-0.0
1,147,790	+				+1.4
1,147,790	+				+0.3
1,147,790	+				-0.8
1,147,790	+				+0.6
1,147,791	-				+1.1
1,147,791	-				-0.1
1,147,791	-				-0.3
1,147,907	+				+0.3
1,147,908	-				-1.4
1,148,012	+		Xcc-8004.1212.1	0.11	-0.7
1,148,174	+		Xcc-8004.1212.1	0.30	+0.5
1,148,175	-		Xcc-8004.1212.1	0.30	-0.6
1,148,224	-		Xcc-8004.1212.1	0.36	-1.8
1,148,350	+		Xcc-8004.1212.1	0.50	+0.2
1,148,350	+		Xcc-8004.1212.1	0.50	+0.1
1,148,353	+		Xcc-8004.1212.1	0.50	-0.3
1,148,353	+		Xcc-8004.1212.1	0.50	-0.9
1,148,353	+		Xcc-8004.1212.1	0.50	-0.5
1,148,353	+		Xcc-8004.1212.1	0.50	-0.7
1,148,353	+		Xcc-8004.1212.1	0.50	-0.6
1,148,353	+		Xcc-8004.1212.1	0.50	+0.8
1,148,353	+		Xcc-8004.1212.1	0.50	-1.1
1,148,354	-		Xcc-8004.1212.1	0.51	-1.3
1,148,354	-		Xcc-8004.1212.1	0.51	-0.3
1,148,354	-		Xcc-8004.1212.1	0.51	+0.4
1,148,354	-		Xcc-8004.1212.1	0.51	-1.2
1,148,354	-		Xcc-8004.1212.1	0.51	+0.0
1,148,354	-		Xcc-8004.1212.1	0.51	-0.4
1,148,354	-		Xcc-8004.1212.1	0.51	+0.6
1,148,496	+		Xcc-8004.1212.1	0.67	+0.0
1,148,496	+		Xcc-8004.1212.1	0.67	+0.6
1,148,497	-		Xcc-8004.1212.1	0.67	+0.3
1,148,523	+		Xcc-8004.1212.1	0.70	+0.7
1,148,524	-		Xcc-8004.1212.1	0.70	+0.2
1,148,542	+		Xcc-8004.1212.1	0.72	-0.7
1,148,581	-		Xcc-8004.1212.1	0.77	-1.1