Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_185

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_184 and Pf6N2E2_185 are separated by 10 nucleotidesPf6N2E2_185 and Pf6N2E2_186 overlap by 4 nucleotidesPf6N2E2_186 and Pf6N2E2_187 are separated by 10 nucleotides Pf6N2E2_184 - Urea ABC transporter, permease protein UrtB, at 237,037 to 237,954 _184 Pf6N2E2_185 - Urea ABC transporter, permease protein UrtC, at 237,965 to 239,152 _185 Pf6N2E2_186 - Urea ABC transporter, ATPase protein UrtD, at 239,149 to 239,907 _186 Pf6N2E2_187 - Urea ABC transporter, ATPase protein UrtE, at 239,918 to 240,607 _187 Position (kb) 237 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 237.199 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.208 kb on + strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.209 kb on - strand, within Pf6N2E2_184at 237.257 kb on - strand, within Pf6N2E2_184at 237.260 kb on - strand, within Pf6N2E2_184at 237.260 kb on - strand, within Pf6N2E2_184at 237.343 kb on + strand, within Pf6N2E2_184at 237.390 kb on - strand, within Pf6N2E2_184at 237.563 kb on - strand, within Pf6N2E2_184at 237.745 kb on + strand, within Pf6N2E2_184at 237.745 kb on + strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.746 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.750 kb on - strand, within Pf6N2E2_184at 237.804 kb on + strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184at 237.805 kb on - strand, within Pf6N2E2_184at 237.953 kb on - strandat 237.953 kb on - strandat 238.091 kb on + strand, within Pf6N2E2_185at 238.092 kb on - strand, within Pf6N2E2_185at 238.100 kb on + strand, within Pf6N2E2_185at 238.100 kb on + strand, within Pf6N2E2_185at 238.100 kb on + strand, within Pf6N2E2_185at 238.101 kb on - strand, within Pf6N2E2_185at 238.101 kb on - strand, within Pf6N2E2_185at 238.366 kb on - strand, within Pf6N2E2_185at 238.421 kb on + strand, within Pf6N2E2_185at 238.421 kb on + strand, within Pf6N2E2_185at 238.422 kb on - strand, within Pf6N2E2_185at 238.422 kb on - strand, within Pf6N2E2_185at 238.877 kb on + strand, within Pf6N2E2_185at 238.877 kb on + strand, within Pf6N2E2_185at 238.898 kb on + strand, within Pf6N2E2_185at 238.899 kb on - strand, within Pf6N2E2_185at 238.910 kb on + strand, within Pf6N2E2_185at 238.911 kb on - strand, within Pf6N2E2_185at 238.911 kb on - strand, within Pf6N2E2_185at 238.944 kb on - strand, within Pf6N2E2_185at 238.979 kb on + strand, within Pf6N2E2_185at 238.980 kb on - strand, within Pf6N2E2_185at 239.248 kb on + strand, within Pf6N2E2_186at 239.248 kb on + strand, within Pf6N2E2_186at 239.248 kb on + strand, within Pf6N2E2_186at 239.249 kb on - strand, within Pf6N2E2_186at 239.249 kb on - strand, within Pf6N2E2_186at 239.249 kb on - strand, within Pf6N2E2_186at 239.393 kb on - strand, within Pf6N2E2_186at 239.393 kb on - strand, within Pf6N2E2_186at 239.717 kb on + strand, within Pf6N2E2_186at 239.808 kb on + strand, within Pf6N2E2_186at 239.893 kb on + strandat 239.893 kb on + strandat 239.894 kb on - strandat 239.897 kb on + strandat 239.928 kb on + strandat 239.928 kb on + strandat 239.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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237,199 + Pf6N2E2_184 0.18 +1.2
237,208 + Pf6N2E2_184 0.19 -0.5
237,208 + Pf6N2E2_184 0.19 +1.1
237,208 + Pf6N2E2_184 0.19 +0.5
237,208 + Pf6N2E2_184 0.19 -1.2
237,208 + Pf6N2E2_184 0.19 -1.8
237,208 + Pf6N2E2_184 0.19 +1.6
237,209 - Pf6N2E2_184 0.19 -1.2
237,209 - Pf6N2E2_184 0.19 +0.3
237,209 - Pf6N2E2_184 0.19 +0.8
237,209 - Pf6N2E2_184 0.19 +0.2
237,209 - Pf6N2E2_184 0.19 -1.1
237,209 - Pf6N2E2_184 0.19 +0.8
237,209 - Pf6N2E2_184 0.19 -0.1
237,209 - Pf6N2E2_184 0.19 +0.5
237,209 - Pf6N2E2_184 0.19 -0.2
237,209 - Pf6N2E2_184 0.19 -0.1
237,209 - Pf6N2E2_184 0.19 -0.3
237,209 - Pf6N2E2_184 0.19 +1.1
237,209 - Pf6N2E2_184 0.19 +0.3
237,209 - Pf6N2E2_184 0.19 -0.9
237,257 - Pf6N2E2_184 0.24 -1.2
237,260 - Pf6N2E2_184 0.24 +0.8
237,260 - Pf6N2E2_184 0.24 -0.1
237,343 + Pf6N2E2_184 0.33 -0.9
237,390 - Pf6N2E2_184 0.38 +1.0
237,563 - Pf6N2E2_184 0.57 -0.2
237,745 + Pf6N2E2_184 0.77 +0.3
237,745 + Pf6N2E2_184 0.77 +0.6
237,746 - Pf6N2E2_184 0.77 +1.8
237,746 - Pf6N2E2_184 0.77 -0.7
237,746 - Pf6N2E2_184 0.77 +0.6
237,746 - Pf6N2E2_184 0.77 -0.6
237,750 - Pf6N2E2_184 0.78 +0.2
237,750 - Pf6N2E2_184 0.78 -0.2
237,750 - Pf6N2E2_184 0.78 +0.9
237,750 - Pf6N2E2_184 0.78 -0.2
237,804 + Pf6N2E2_184 0.84 +0.9
237,805 - Pf6N2E2_184 0.84 -1.4
237,805 - Pf6N2E2_184 0.84 -0.7
237,805 - Pf6N2E2_184 0.84 -0.0
237,953 - -1.0
237,953 - +0.4
238,091 + Pf6N2E2_185 0.11 -0.1
238,092 - Pf6N2E2_185 0.11 +1.6
238,100 + Pf6N2E2_185 0.11 +0.5
238,100 + Pf6N2E2_185 0.11 +1.5
238,100 + Pf6N2E2_185 0.11 +0.0
238,101 - Pf6N2E2_185 0.11 +1.1
238,101 - Pf6N2E2_185 0.11 +0.0
238,366 - Pf6N2E2_185 0.34 +1.3
238,421 + Pf6N2E2_185 0.38 +0.8
238,421 + Pf6N2E2_185 0.38 +0.2
238,422 - Pf6N2E2_185 0.38 -0.2
238,422 - Pf6N2E2_185 0.38 +1.6
238,877 + Pf6N2E2_185 0.77 -0.2
238,877 + Pf6N2E2_185 0.77 -1.6
238,898 + Pf6N2E2_185 0.79 -1.7
238,899 - Pf6N2E2_185 0.79 -0.2
238,910 + Pf6N2E2_185 0.80 +0.8
238,911 - Pf6N2E2_185 0.80 +0.3
238,911 - Pf6N2E2_185 0.80 +1.8
238,944 - Pf6N2E2_185 0.82 +0.7
238,979 + Pf6N2E2_185 0.85 +0.7
238,980 - Pf6N2E2_185 0.85 -0.6
239,248 + Pf6N2E2_186 0.13 +0.6
239,248 + Pf6N2E2_186 0.13 -0.0
239,248 + Pf6N2E2_186 0.13 -0.6
239,249 - Pf6N2E2_186 0.13 -0.2
239,249 - Pf6N2E2_186 0.13 -0.4
239,249 - Pf6N2E2_186 0.13 +0.8
239,393 - Pf6N2E2_186 0.32 +1.3
239,393 - Pf6N2E2_186 0.32 +1.2
239,717 + Pf6N2E2_186 0.75 -1.2
239,808 + Pf6N2E2_186 0.87 -0.8
239,893 + +0.6
239,893 + -2.2
239,894 - +0.3
239,897 + +0.1
239,928 + +0.9
239,928 + -0.6
239,929 - +1.6

Or see this region's nucleotide sequence