Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.541.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.540.1 and Xcc-8004.541.1 overlap by 4 nucleotidesXcc-8004.541.1 and Xcc-8004.542.1 overlap by 4 nucleotides Xcc-8004.540.1: Xcc-8004.540.1 - Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141), at 497,991 to 499,748 Xcc-8004.540.1 Xcc-8004.541.1: Xcc-8004.541.1 - 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25), at 499,745 to 501,676 Xcc-8004.541.1 Xcc-8004.542.1: Xcc-8004.542.1 - Malto-oligosyltrehalose synthase (EC 5.4.99.15), at 501,673 to 504,291 Xcc-8004.542.1 Position (kb) 499 500 501 502Strain fitness (log2 ratio) -2 -1 0 1at 498.803 kb on + strand, within Xcc-8004.540.1at 498.803 kb on + strand, within Xcc-8004.540.1at 498.904 kb on - strand, within Xcc-8004.540.1at 498.972 kb on + strand, within Xcc-8004.540.1at 498.972 kb on + strand, within Xcc-8004.540.1at 498.972 kb on + strand, within Xcc-8004.540.1at 498.972 kb on + strand, within Xcc-8004.540.1at 498.973 kb on - strand, within Xcc-8004.540.1at 498.973 kb on - strand, within Xcc-8004.540.1at 498.973 kb on - strand, within Xcc-8004.540.1at 498.975 kb on + strand, within Xcc-8004.540.1at 498.975 kb on + strand, within Xcc-8004.540.1at 498.975 kb on + strand, within Xcc-8004.540.1at 498.975 kb on + strand, within Xcc-8004.540.1at 498.975 kb on + strand, within Xcc-8004.540.1at 498.975 kb on + strand, within Xcc-8004.540.1at 498.975 kb on + strand, within Xcc-8004.540.1at 498.976 kb on - strand, within Xcc-8004.540.1at 498.976 kb on - strand, within Xcc-8004.540.1at 498.976 kb on - strand, within Xcc-8004.540.1at 499.038 kb on + strand, within Xcc-8004.540.1at 499.103 kb on + strand, within Xcc-8004.540.1at 499.103 kb on + strand, within Xcc-8004.540.1at 499.104 kb on - strand, within Xcc-8004.540.1at 499.104 kb on - strand, within Xcc-8004.540.1at 499.104 kb on - strand, within Xcc-8004.540.1at 499.104 kb on - strand, within Xcc-8004.540.1at 499.611 kb on - strandat 499.611 kb on - strandat 499.611 kb on - strandat 499.686 kb on - strandat 499.731 kb on + strandat 499.732 kb on - strandat 499.750 kb on + strandat 499.750 kb on + strandat 499.751 kb on - strandat 499.751 kb on - strandat 499.751 kb on - strandat 499.751 kb on - strandat 500.088 kb on - strand, within Xcc-8004.541.1at 500.210 kb on + strand, within Xcc-8004.541.1at 500.210 kb on + strand, within Xcc-8004.541.1at 500.210 kb on + strand, within Xcc-8004.541.1at 500.211 kb on - strand, within Xcc-8004.541.1at 500.211 kb on - strand, within Xcc-8004.541.1at 500.348 kb on + strand, within Xcc-8004.541.1at 500.349 kb on - strand, within Xcc-8004.541.1at 500.814 kb on + strand, within Xcc-8004.541.1at 500.814 kb on + strand, within Xcc-8004.541.1at 500.815 kb on - strand, within Xcc-8004.541.1at 500.815 kb on - strand, within Xcc-8004.541.1at 500.888 kb on + strand, within Xcc-8004.541.1at 500.889 kb on - strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.927 kb on + strand, within Xcc-8004.541.1at 500.928 kb on - strand, within Xcc-8004.541.1at 500.928 kb on - strand, within Xcc-8004.541.1at 500.928 kb on - strand, within Xcc-8004.541.1at 500.928 kb on - strand, within Xcc-8004.541.1at 500.929 kb on + strand, within Xcc-8004.541.1at 500.929 kb on + strand, within Xcc-8004.541.1at 500.930 kb on - strand, within Xcc-8004.541.1at 500.930 kb on - strand, within Xcc-8004.541.1at 500.930 kb on - strand, within Xcc-8004.541.1at 501.044 kb on + strand, within Xcc-8004.541.1at 501.044 kb on + strand, within Xcc-8004.541.1at 501.751 kb on + strandat 501.752 kb on - strandat 501.752 kb on - strandat 501.752 kb on - strandat 501.754 kb on + strandat 501.754 kb on + strandat 501.754 kb on + strandat 501.754 kb on + strandat 501.781 kb on + strandat 501.781 kb on + strandat 501.781 kb on + strandat 501.782 kb on - strandat 501.782 kb on - strandat 501.782 kb on - strandat 501.782 kb on - strandat 501.782 kb on - strandat 501.816 kb on + strandat 501.816 kb on + strandat 501.816 kb on + strandat 501.816 kb on + strandat 501.817 kb on - strandat 501.817 kb on - strandat 501.817 kb on - strandat 501.817 kb on - strandat 502.091 kb on - strand, within Xcc-8004.542.1at 502.091 kb on - strand, within Xcc-8004.542.1at 502.162 kb on + strand, within Xcc-8004.542.1at 502.162 kb on + strand, within Xcc-8004.542.1at 502.163 kb on - strand, within Xcc-8004.542.1at 502.163 kb on - strand, within Xcc-8004.542.1at 502.163 kb on - strand, within Xcc-8004.542.1at 502.163 kb on - strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.240 kb on + strand, within Xcc-8004.542.1at 502.241 kb on - strand, within Xcc-8004.542.1at 502.241 kb on - strand, within Xcc-8004.542.1at 502.300 kb on + strand, within Xcc-8004.542.1at 502.501 kb on + strand, within Xcc-8004.542.1at 502.576 kb on + strand, within Xcc-8004.542.1at 502.576 kb on + strand, within Xcc-8004.542.1at 502.577 kb on - strand, within Xcc-8004.542.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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498,803 + Xcc-8004.540.1 0.46 +0.3
498,803 + Xcc-8004.540.1 0.46 -0.9
498,904 - Xcc-8004.540.1 0.52 +0.5
498,972 + Xcc-8004.540.1 0.56 +0.2
498,972 + Xcc-8004.540.1 0.56 +0.9
498,972 + Xcc-8004.540.1 0.56 +0.8
498,972 + Xcc-8004.540.1 0.56 +0.7
498,973 - Xcc-8004.540.1 0.56 +0.2
498,973 - Xcc-8004.540.1 0.56 -0.2
498,973 - Xcc-8004.540.1 0.56 -0.8
498,975 + Xcc-8004.540.1 0.56 +0.1
498,975 + Xcc-8004.540.1 0.56 +0.1
498,975 + Xcc-8004.540.1 0.56 -0.2
498,975 + Xcc-8004.540.1 0.56 +0.4
498,975 + Xcc-8004.540.1 0.56 -0.5
498,975 + Xcc-8004.540.1 0.56 +1.1
498,975 + Xcc-8004.540.1 0.56 +0.1
498,976 - Xcc-8004.540.1 0.56 -0.7
498,976 - Xcc-8004.540.1 0.56 -1.1
498,976 - Xcc-8004.540.1 0.56 -0.0
499,038 + Xcc-8004.540.1 0.60 -0.2
499,103 + Xcc-8004.540.1 0.63 +0.0
499,103 + Xcc-8004.540.1 0.63 -2.5
499,104 - Xcc-8004.540.1 0.63 +0.2
499,104 - Xcc-8004.540.1 0.63 -1.3
499,104 - Xcc-8004.540.1 0.63 +0.5
499,104 - Xcc-8004.540.1 0.63 -0.7
499,611 - +0.9
499,611 - -1.0
499,611 - -1.7
499,686 - +0.8
499,731 + +0.3
499,732 - -0.4
499,750 + +1.0
499,750 + +0.7
499,751 - -1.0
499,751 - -0.4
499,751 - +0.4
499,751 - -2.0
500,088 - Xcc-8004.541.1 0.18 +0.9
500,210 + Xcc-8004.541.1 0.24 +0.4
500,210 + Xcc-8004.541.1 0.24 +1.0
500,210 + Xcc-8004.541.1 0.24 -0.5
500,211 - Xcc-8004.541.1 0.24 +0.3
500,211 - Xcc-8004.541.1 0.24 -0.3
500,348 + Xcc-8004.541.1 0.31 +0.5
500,349 - Xcc-8004.541.1 0.31 -0.3
500,814 + Xcc-8004.541.1 0.55 +1.0
500,814 + Xcc-8004.541.1 0.55 +0.4
500,815 - Xcc-8004.541.1 0.55 -0.1
500,815 - Xcc-8004.541.1 0.55 +0.1
500,888 + Xcc-8004.541.1 0.59 +0.1
500,889 - Xcc-8004.541.1 0.59 +0.2
500,927 + Xcc-8004.541.1 0.61 +0.9
500,927 + Xcc-8004.541.1 0.61 -0.7
500,927 + Xcc-8004.541.1 0.61 +0.2
500,927 + Xcc-8004.541.1 0.61 +0.3
500,927 + Xcc-8004.541.1 0.61 -1.2
500,927 + Xcc-8004.541.1 0.61 +1.1
500,928 - Xcc-8004.541.1 0.61 -0.3
500,928 - Xcc-8004.541.1 0.61 +0.1
500,928 - Xcc-8004.541.1 0.61 +0.4
500,928 - Xcc-8004.541.1 0.61 +0.6
500,929 + Xcc-8004.541.1 0.61 -1.0
500,929 + Xcc-8004.541.1 0.61 +1.2
500,930 - Xcc-8004.541.1 0.61 -0.1
500,930 - Xcc-8004.541.1 0.61 +0.7
500,930 - Xcc-8004.541.1 0.61 +0.0
501,044 + Xcc-8004.541.1 0.67 +0.8
501,044 + Xcc-8004.541.1 0.67 +0.9
501,751 + +0.0
501,752 - -0.8
501,752 - +0.0
501,752 - -1.8
501,754 + +0.4
501,754 + +0.0
501,754 + -0.5
501,754 + -1.1
501,781 + -1.7
501,781 + -0.5
501,781 + -0.1
501,782 - -1.0
501,782 - -1.2
501,782 - -0.2
501,782 - +1.4
501,782 - -0.3
501,816 + +0.1
501,816 + -0.4
501,816 + -1.5
501,816 + -0.5
501,817 - -0.2
501,817 - -2.5
501,817 - +0.3
501,817 - -1.5
502,091 - Xcc-8004.542.1 0.16 -2.1
502,091 - Xcc-8004.542.1 0.16 +0.0
502,162 + Xcc-8004.542.1 0.19 -1.2
502,162 + Xcc-8004.542.1 0.19 -0.5
502,163 - Xcc-8004.542.1 0.19 -1.2
502,163 - Xcc-8004.542.1 0.19 -0.4
502,163 - Xcc-8004.542.1 0.19 +0.3
502,163 - Xcc-8004.542.1 0.19 -0.9
502,240 + Xcc-8004.542.1 0.22 -0.0
502,240 + Xcc-8004.542.1 0.22 -0.0
502,240 + Xcc-8004.542.1 0.22 +0.2
502,240 + Xcc-8004.542.1 0.22 -0.9
502,240 + Xcc-8004.542.1 0.22 -0.1
502,241 - Xcc-8004.542.1 0.22 +0.6
502,241 - Xcc-8004.542.1 0.22 +0.5
502,300 + Xcc-8004.542.1 0.24 -0.3
502,501 + Xcc-8004.542.1 0.32 -0.9
502,576 + Xcc-8004.542.1 0.34 +0.4
502,576 + Xcc-8004.542.1 0.34 +0.8
502,577 - Xcc-8004.542.1 0.35 +0.2

Or see this region's nucleotide sequence