Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4618.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4616.1 and Xcc-8004.4617.1 are separated by 29 nucleotidesXcc-8004.4617.1 and Xcc-8004.4618.1 overlap by 14 nucleotidesXcc-8004.4618.1 and Xcc-8004.4619.1 are separated by 98 nucleotidesXcc-8004.4619.1 and Xcc-8004.4620.1 are separated by 152 nucleotides Xcc-8004.4616.1: Xcc-8004.4616.1 - Sensor histidine kinase, at 4,401,143 to 4,403,251 Xcc-8004.4616.1 Xcc-8004.4617.1: Xcc-8004.4617.1 - FIG01209884: hypothetical protein, at 4,403,281 to 4,403,571 Xcc-8004.4617.1 Xcc-8004.4618.1: Xcc-8004.4618.1 - FIG01209774: hypothetical protein, at 4,403,558 to 4,404,052 Xcc-8004.4618.1 Xcc-8004.4619.1: Xcc-8004.4619.1 - FIG01212331: hypothetical protein, at 4,404,151 to 4,404,831 Xcc-8004.4619.1 Xcc-8004.4620.1: Xcc-8004.4620.1 - Alanine racemase (EC 5.1.1.1), at 4,404,984 to 4,406,066 Xcc-8004.4620.1 Position (kb) 4403 4404 4405Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4402.588 kb on + strand, within Xcc-8004.4616.1at 4402.600 kb on + strand, within Xcc-8004.4616.1at 4402.600 kb on + strand, within Xcc-8004.4616.1at 4402.601 kb on - strand, within Xcc-8004.4616.1at 4402.623 kb on + strand, within Xcc-8004.4616.1at 4402.624 kb on - strand, within Xcc-8004.4616.1at 4402.821 kb on + strand, within Xcc-8004.4616.1at 4402.875 kb on - strand, within Xcc-8004.4616.1at 4402.968 kb on + strand, within Xcc-8004.4616.1at 4402.969 kb on - strand, within Xcc-8004.4616.1at 4402.969 kb on - strand, within Xcc-8004.4616.1at 4403.004 kb on + strand, within Xcc-8004.4616.1at 4403.004 kb on + strand, within Xcc-8004.4616.1at 4403.004 kb on + strand, within Xcc-8004.4616.1at 4403.004 kb on + strand, within Xcc-8004.4616.1at 4403.004 kb on + strand, within Xcc-8004.4616.1at 4403.005 kb on - strand, within Xcc-8004.4616.1at 4403.005 kb on - strand, within Xcc-8004.4616.1at 4403.005 kb on - strand, within Xcc-8004.4616.1at 4403.005 kb on - strand, within Xcc-8004.4616.1at 4403.005 kb on - strand, within Xcc-8004.4616.1at 4403.005 kb on - strand, within Xcc-8004.4616.1at 4403.005 kb on - strand, within Xcc-8004.4616.1at 4403.082 kb on + strandat 4403.082 kb on + strandat 4403.082 kb on + strandat 4403.082 kb on + strandat 4403.083 kb on - strandat 4403.083 kb on - strandat 4403.083 kb on - strandat 4403.083 kb on - strandat 4403.083 kb on - strandat 4403.083 kb on - strandat 4403.083 kb on - strandat 4403.083 kb on - strandat 4403.282 kb on + strandat 4403.283 kb on - strandat 4403.283 kb on - strandat 4403.283 kb on - strandat 4403.429 kb on + strand, within Xcc-8004.4617.1at 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.571 kb on + strandat 4403.572 kb on - strandat 4403.572 kb on - strandat 4403.572 kb on - strandat 4403.572 kb on - strandat 4403.572 kb on - strandat 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.628 kb on + strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.629 kb on - strand, within Xcc-8004.4618.1at 4403.673 kb on + strand, within Xcc-8004.4618.1at 4403.673 kb on + strand, within Xcc-8004.4618.1at 4403.673 kb on + strand, within Xcc-8004.4618.1at 4403.673 kb on + strand, within Xcc-8004.4618.1at 4403.674 kb on - strand, within Xcc-8004.4618.1at 4403.674 kb on - strand, within Xcc-8004.4618.1at 4403.674 kb on - strand, within Xcc-8004.4618.1at 4403.742 kb on + strand, within Xcc-8004.4618.1at 4403.748 kb on + strand, within Xcc-8004.4618.1at 4403.748 kb on + strand, within Xcc-8004.4618.1at 4403.749 kb on - strand, within Xcc-8004.4618.1at 4403.749 kb on - strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.772 kb on + strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.773 kb on - strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.778 kb on + strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4403.779 kb on - strand, within Xcc-8004.4618.1at 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.042 kb on + strandat 4404.043 kb on - strandat 4404.043 kb on - strandat 4404.043 kb on - strandat 4404.133 kb on + strandat 4404.424 kb on + strand, within Xcc-8004.4619.1at 4404.424 kb on + strand, within Xcc-8004.4619.1at 4404.425 kb on - strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.481 kb on + strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.482 kb on - strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.565 kb on + strand, within Xcc-8004.4619.1at 4404.566 kb on - strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.619 kb on + strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.620 kb on - strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.643 kb on + strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.644 kb on - strand, within Xcc-8004.4619.1at 4404.816 kb on + strandat 4404.817 kb on - strandat 4404.940 kb on + strandat 4404.940 kb on + strandat 4404.969 kb on + strandat 4404.970 kb on - strandat 4405.006 kb on + strandat 4405.007 kb on - strandat 4405.007 kb on - strandat 4405.007 kb on - strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.045 kb on + strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strandat 4405.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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4,402,588 + Xcc-8004.4616.1 0.69 +1.7
4,402,600 + Xcc-8004.4616.1 0.69 +1.7
4,402,600 + Xcc-8004.4616.1 0.69 +1.8
4,402,601 - Xcc-8004.4616.1 0.69 +1.8
4,402,623 + Xcc-8004.4616.1 0.70 +0.6
4,402,624 - Xcc-8004.4616.1 0.70 +1.9
4,402,821 + Xcc-8004.4616.1 0.80 +1.9
4,402,875 - Xcc-8004.4616.1 0.82 +2.1
4,402,968 + Xcc-8004.4616.1 0.87 +2.6
4,402,969 - Xcc-8004.4616.1 0.87 +1.9
4,402,969 - Xcc-8004.4616.1 0.87 +2.1
4,403,004 + Xcc-8004.4616.1 0.88 +0.4
4,403,004 + Xcc-8004.4616.1 0.88 +1.8
4,403,004 + Xcc-8004.4616.1 0.88 +1.3
4,403,004 + Xcc-8004.4616.1 0.88 +3.3
4,403,004 + Xcc-8004.4616.1 0.88 +3.0
4,403,005 - Xcc-8004.4616.1 0.88 +2.1
4,403,005 - Xcc-8004.4616.1 0.88 +2.7
4,403,005 - Xcc-8004.4616.1 0.88 +1.6
4,403,005 - Xcc-8004.4616.1 0.88 +2.0
4,403,005 - Xcc-8004.4616.1 0.88 +1.9
4,403,005 - Xcc-8004.4616.1 0.88 +1.5
4,403,005 - Xcc-8004.4616.1 0.88 +1.7
4,403,082 + +1.6
4,403,082 + +1.9
4,403,082 + +2.7
4,403,082 + +3.0
4,403,083 - +2.2
4,403,083 - +2.2
4,403,083 - +1.5
4,403,083 - +1.8
4,403,083 - +3.4
4,403,083 - +0.5
4,403,083 - +2.2
4,403,083 - +1.9
4,403,282 + +0.8
4,403,283 - -0.5
4,403,283 - -1.1
4,403,283 - -0.1
4,403,429 + Xcc-8004.4617.1 0.51 +0.5
4,403,571 + -2.0
4,403,571 + -1.6
4,403,571 + -3.1
4,403,571 + -3.5
4,403,571 + -3.2
4,403,571 + -4.4
4,403,571 + -1.2
4,403,571 + -2.6
4,403,572 - -4.0
4,403,572 - -0.7
4,403,572 - -3.3
4,403,572 - -1.9
4,403,572 - -1.6
4,403,628 + Xcc-8004.4618.1 0.14 -1.9
4,403,628 + Xcc-8004.4618.1 0.14 -2.9
4,403,628 + Xcc-8004.4618.1 0.14 -1.3
4,403,628 + Xcc-8004.4618.1 0.14 -4.0
4,403,628 + Xcc-8004.4618.1 0.14 -0.9
4,403,628 + Xcc-8004.4618.1 0.14 -1.8
4,403,628 + Xcc-8004.4618.1 0.14 -2.9
4,403,628 + Xcc-8004.4618.1 0.14 -0.5
4,403,628 + Xcc-8004.4618.1 0.14 -2.2
4,403,629 - Xcc-8004.4618.1 0.14 -2.9
4,403,629 - Xcc-8004.4618.1 0.14 -3.5
4,403,629 - Xcc-8004.4618.1 0.14 -3.8
4,403,629 - Xcc-8004.4618.1 0.14 -2.9
4,403,629 - Xcc-8004.4618.1 0.14 -2.0
4,403,629 - Xcc-8004.4618.1 0.14 -2.5
4,403,629 - Xcc-8004.4618.1 0.14 -3.4
4,403,673 + Xcc-8004.4618.1 0.23 -1.5
4,403,673 + Xcc-8004.4618.1 0.23 -2.1
4,403,673 + Xcc-8004.4618.1 0.23 -2.4
4,403,673 + Xcc-8004.4618.1 0.23 -1.9
4,403,674 - Xcc-8004.4618.1 0.23 -1.6
4,403,674 - Xcc-8004.4618.1 0.23 -2.3
4,403,674 - Xcc-8004.4618.1 0.23 -1.8
4,403,742 + Xcc-8004.4618.1 0.37 -3.3
4,403,748 + Xcc-8004.4618.1 0.38 -2.6
4,403,748 + Xcc-8004.4618.1 0.38 -1.9
4,403,749 - Xcc-8004.4618.1 0.39 -1.9
4,403,749 - Xcc-8004.4618.1 0.39 -1.3
4,403,772 + Xcc-8004.4618.1 0.43 -0.5
4,403,772 + Xcc-8004.4618.1 0.43 -0.8
4,403,772 + Xcc-8004.4618.1 0.43 -4.2
4,403,772 + Xcc-8004.4618.1 0.43 -3.5
4,403,772 + Xcc-8004.4618.1 0.43 -2.7
4,403,773 - Xcc-8004.4618.1 0.43 -3.5
4,403,773 - Xcc-8004.4618.1 0.43 -2.6
4,403,773 - Xcc-8004.4618.1 0.43 -3.5
4,403,773 - Xcc-8004.4618.1 0.43 -3.0
4,403,773 - Xcc-8004.4618.1 0.43 -2.3
4,403,778 + Xcc-8004.4618.1 0.44 -0.6
4,403,778 + Xcc-8004.4618.1 0.44 -2.8
4,403,778 + Xcc-8004.4618.1 0.44 -2.4
4,403,778 + Xcc-8004.4618.1 0.44 -1.9
4,403,778 + Xcc-8004.4618.1 0.44 -1.6
4,403,779 - Xcc-8004.4618.1 0.45 -1.5
4,403,779 - Xcc-8004.4618.1 0.45 -3.3
4,403,779 - Xcc-8004.4618.1 0.45 -2.4
4,403,779 - Xcc-8004.4618.1 0.45 -2.9
4,403,779 - Xcc-8004.4618.1 0.45 -2.3
4,403,779 - Xcc-8004.4618.1 0.45 -2.6
4,404,042 + -2.6
4,404,042 + -1.2
4,404,042 + -2.2
4,404,042 + -3.4
4,404,042 + -2.1
4,404,042 + -0.5
4,404,042 + -4.0
4,404,042 + -0.9
4,404,043 - -2.4
4,404,043 - -2.5
4,404,043 - -2.1
4,404,133 + -0.8
4,404,424 + Xcc-8004.4619.1 0.40 +0.0
4,404,424 + Xcc-8004.4619.1 0.40 -0.8
4,404,425 - Xcc-8004.4619.1 0.40 +0.5
4,404,481 + Xcc-8004.4619.1 0.48 -0.7
4,404,481 + Xcc-8004.4619.1 0.48 -0.6
4,404,481 + Xcc-8004.4619.1 0.48 -0.1
4,404,481 + Xcc-8004.4619.1 0.48 -0.7
4,404,481 + Xcc-8004.4619.1 0.48 -0.3
4,404,482 - Xcc-8004.4619.1 0.49 +1.1
4,404,482 - Xcc-8004.4619.1 0.49 -1.8
4,404,482 - Xcc-8004.4619.1 0.49 -0.1
4,404,482 - Xcc-8004.4619.1 0.49 -2.1
4,404,482 - Xcc-8004.4619.1 0.49 +0.5
4,404,482 - Xcc-8004.4619.1 0.49 +0.0
4,404,565 + Xcc-8004.4619.1 0.61 +0.4
4,404,565 + Xcc-8004.4619.1 0.61 -1.3
4,404,565 + Xcc-8004.4619.1 0.61 -1.4
4,404,566 - Xcc-8004.4619.1 0.61 +0.1
4,404,619 + Xcc-8004.4619.1 0.69 +0.0
4,404,619 + Xcc-8004.4619.1 0.69 -0.2
4,404,619 + Xcc-8004.4619.1 0.69 -0.7
4,404,619 + Xcc-8004.4619.1 0.69 -0.5
4,404,620 - Xcc-8004.4619.1 0.69 -1.6
4,404,620 - Xcc-8004.4619.1 0.69 +0.7
4,404,620 - Xcc-8004.4619.1 0.69 +0.4
4,404,620 - Xcc-8004.4619.1 0.69 +0.9
4,404,620 - Xcc-8004.4619.1 0.69 -0.7
4,404,620 - Xcc-8004.4619.1 0.69 -0.1
4,404,620 - Xcc-8004.4619.1 0.69 +1.1
4,404,643 + Xcc-8004.4619.1 0.72 +0.8
4,404,643 + Xcc-8004.4619.1 0.72 -0.5
4,404,643 + Xcc-8004.4619.1 0.72 -0.7
4,404,643 + Xcc-8004.4619.1 0.72 -0.7
4,404,644 - Xcc-8004.4619.1 0.72 -0.3
4,404,644 - Xcc-8004.4619.1 0.72 -0.9
4,404,644 - Xcc-8004.4619.1 0.72 -0.6
4,404,816 + +0.1
4,404,817 - -0.9
4,404,940 + +0.9
4,404,940 + -0.9
4,404,969 + +0.1
4,404,970 - +0.1
4,405,006 + +0.1
4,405,007 - +0.4
4,405,007 - +1.2
4,405,007 - +0.5
4,405,045 + -3.7
4,405,045 + -0.7
4,405,045 + -2.9
4,405,045 + -2.8
4,405,046 - -2.6
4,405,046 - -1.3
4,405,046 - -2.8
4,405,046 - -3.8
4,405,046 - -2.4

Or see this region's nucleotide sequence