Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2349.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2348.1 and Xcc-8004.2349.1 are separated by 147 nucleotidesXcc-8004.2349.1 and Xcc-8004.2350.1 are separated by 263 nucleotides Xcc-8004.2348.1: Xcc-8004.2348.1 - hypothetical protein, at 2,294,310 to 2,295,458 Xcc-8004.2348.1 Xcc-8004.2349.1: Xcc-8004.2349.1 - Aliphatic amidase AmiE (EC 3.5.1.4), at 2,295,606 to 2,296,406 Xcc-8004.2349.1 Xcc-8004.2350.1: Xcc-8004.2350.1 - Glutamine cyclotransferase, at 2,296,670 to 2,297,473 Xcc-8004.2350.1 Position (kb) 2295 2296 2297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2294.667 kb on + strand, within Xcc-8004.2348.1at 2294.676 kb on + strand, within Xcc-8004.2348.1at 2294.676 kb on + strand, within Xcc-8004.2348.1at 2294.907 kb on + strand, within Xcc-8004.2348.1at 2294.907 kb on + strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.034 kb on - strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.177 kb on + strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.178 kb on - strand, within Xcc-8004.2348.1at 2295.252 kb on + strand, within Xcc-8004.2348.1at 2295.252 kb on + strand, within Xcc-8004.2348.1at 2295.252 kb on + strand, within Xcc-8004.2348.1at 2295.253 kb on - strand, within Xcc-8004.2348.1at 2295.253 kb on - strand, within Xcc-8004.2348.1at 2295.270 kb on + strand, within Xcc-8004.2348.1at 2295.271 kb on - strand, within Xcc-8004.2348.1at 2295.271 kb on - strand, within Xcc-8004.2348.1at 2295.360 kb on + strandat 2295.360 kb on + strandat 2295.360 kb on + strandat 2295.361 kb on - strandat 2295.446 kb on - strandat 2295.503 kb on + strandat 2295.503 kb on + strandat 2295.503 kb on + strandat 2295.503 kb on + strandat 2295.504 kb on - strandat 2295.504 kb on - strandat 2295.624 kb on + strandat 2295.675 kb on + strandat 2295.676 kb on - strandat 2295.676 kb on - strandat 2295.676 kb on - strandat 2295.676 kb on - strandat 2295.678 kb on + strandat 2295.678 kb on + strandat 2295.678 kb on + strandat 2295.679 kb on - strandat 2295.679 kb on - strandat 2295.679 kb on - strandat 2295.921 kb on + strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.922 kb on - strand, within Xcc-8004.2349.1at 2295.924 kb on + strand, within Xcc-8004.2349.1at 2295.924 kb on + strand, within Xcc-8004.2349.1at 2295.924 kb on + strand, within Xcc-8004.2349.1at 2295.925 kb on - strand, within Xcc-8004.2349.1at 2295.970 kb on - strand, within Xcc-8004.2349.1at 2295.970 kb on - strand, within Xcc-8004.2349.1at 2296.035 kb on + strand, within Xcc-8004.2349.1at 2296.035 kb on + strand, within Xcc-8004.2349.1at 2296.035 kb on + strand, within Xcc-8004.2349.1at 2296.036 kb on - strand, within Xcc-8004.2349.1at 2296.078 kb on + strand, within Xcc-8004.2349.1at 2296.078 kb on + strand, within Xcc-8004.2349.1at 2296.079 kb on - strand, within Xcc-8004.2349.1at 2296.079 kb on - strand, within Xcc-8004.2349.1at 2296.146 kb on + strand, within Xcc-8004.2349.1at 2296.242 kb on + strand, within Xcc-8004.2349.1at 2296.243 kb on - strand, within Xcc-8004.2349.1at 2296.404 kb on + strandat 2296.404 kb on + strandat 2296.404 kb on + strandat 2296.404 kb on + strandat 2296.404 kb on + strandat 2296.405 kb on - strandat 2296.405 kb on - strandat 2296.405 kb on - strandat 2296.478 kb on + strandat 2296.478 kb on + strandat 2296.479 kb on - strandat 2296.479 kb on - strandat 2296.479 kb on - strandat 2296.551 kb on + strandat 2296.618 kb on + strandat 2296.672 kb on - strandat 2296.725 kb on + strandat 2296.725 kb on + strandat 2296.726 kb on - strandat 2296.866 kb on - strand, within Xcc-8004.2350.1at 2296.866 kb on - strand, within Xcc-8004.2350.1at 2296.866 kb on - strand, within Xcc-8004.2350.1at 2296.866 kb on - strand, within Xcc-8004.2350.1at 2296.866 kb on - strand, within Xcc-8004.2350.1at 2296.923 kb on - strand, within Xcc-8004.2350.1at 2296.923 kb on - strand, within Xcc-8004.2350.1at 2297.058 kb on + strand, within Xcc-8004.2350.1at 2297.058 kb on + strand, within Xcc-8004.2350.1at 2297.058 kb on + strand, within Xcc-8004.2350.1at 2297.058 kb on + strand, within Xcc-8004.2350.1at 2297.058 kb on + strand, within Xcc-8004.2350.1at 2297.059 kb on - strand, within Xcc-8004.2350.1at 2297.059 kb on - strand, within Xcc-8004.2350.1at 2297.059 kb on - strand, within Xcc-8004.2350.1at 2297.059 kb on - strand, within Xcc-8004.2350.1at 2297.059 kb on - strand, within Xcc-8004.2350.1at 2297.059 kb on - strand, within Xcc-8004.2350.1at 2297.059 kb on - strand, within Xcc-8004.2350.1at 2297.142 kb on + strand, within Xcc-8004.2350.1at 2297.142 kb on + strand, within Xcc-8004.2350.1at 2297.143 kb on - strand, within Xcc-8004.2350.1at 2297.162 kb on - strand, within Xcc-8004.2350.1at 2297.217 kb on + strand, within Xcc-8004.2350.1at 2297.217 kb on + strand, within Xcc-8004.2350.1at 2297.217 kb on + strand, within Xcc-8004.2350.1at 2297.218 kb on - strand, within Xcc-8004.2350.1at 2297.310 kb on + strand, within Xcc-8004.2350.1at 2297.311 kb on - strand, within Xcc-8004.2350.1at 2297.311 kb on - strand, within Xcc-8004.2350.1at 2297.328 kb on + strand, within Xcc-8004.2350.1at 2297.328 kb on + strand, within Xcc-8004.2350.1at 2297.328 kb on + strand, within Xcc-8004.2350.1at 2297.328 kb on + strand, within Xcc-8004.2350.1at 2297.328 kb on + strand, within Xcc-8004.2350.1at 2297.328 kb on + strand, within Xcc-8004.2350.1at 2297.329 kb on - strand, within Xcc-8004.2350.1at 2297.329 kb on - strand, within Xcc-8004.2350.1at 2297.368 kb on - strand, within Xcc-8004.2350.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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2,294,667 + Xcc-8004.2348.1 0.31 -1.6
2,294,676 + Xcc-8004.2348.1 0.32 -3.7
2,294,676 + Xcc-8004.2348.1 0.32 -1.3
2,294,907 + Xcc-8004.2348.1 0.52 -3.2
2,294,907 + Xcc-8004.2348.1 0.52 -0.9
2,294,908 - Xcc-8004.2348.1 0.52 -1.8
2,294,908 - Xcc-8004.2348.1 0.52 -3.0
2,294,908 - Xcc-8004.2348.1 0.52 -0.4
2,295,006 + Xcc-8004.2348.1 0.61 -2.6
2,295,006 + Xcc-8004.2348.1 0.61 -2.3
2,295,006 + Xcc-8004.2348.1 0.61 -1.4
2,295,006 + Xcc-8004.2348.1 0.61 +0.9
2,295,007 - Xcc-8004.2348.1 0.61 -2.0
2,295,007 - Xcc-8004.2348.1 0.61 -1.0
2,295,007 - Xcc-8004.2348.1 0.61 -0.7
2,295,007 - Xcc-8004.2348.1 0.61 -1.4
2,295,007 - Xcc-8004.2348.1 0.61 -1.1
2,295,007 - Xcc-8004.2348.1 0.61 -1.6
2,295,007 - Xcc-8004.2348.1 0.61 -2.7
2,295,034 - Xcc-8004.2348.1 0.63 -1.9
2,295,084 + Xcc-8004.2348.1 0.67 -1.1
2,295,084 + Xcc-8004.2348.1 0.67 -0.5
2,295,084 + Xcc-8004.2348.1 0.67 -1.0
2,295,084 + Xcc-8004.2348.1 0.67 -2.0
2,295,085 - Xcc-8004.2348.1 0.67 -1.9
2,295,085 - Xcc-8004.2348.1 0.67 -1.0
2,295,085 - Xcc-8004.2348.1 0.67 -1.3
2,295,085 - Xcc-8004.2348.1 0.67 -3.6
2,295,085 - Xcc-8004.2348.1 0.67 -0.8
2,295,085 - Xcc-8004.2348.1 0.67 -1.2
2,295,085 - Xcc-8004.2348.1 0.67 -2.3
2,295,177 + Xcc-8004.2348.1 0.75 -1.4
2,295,177 + Xcc-8004.2348.1 0.75 -1.2
2,295,177 + Xcc-8004.2348.1 0.75 -1.0
2,295,177 + Xcc-8004.2348.1 0.75 -2.3
2,295,177 + Xcc-8004.2348.1 0.75 -0.2
2,295,178 - Xcc-8004.2348.1 0.76 -1.3
2,295,178 - Xcc-8004.2348.1 0.76 -1.6
2,295,178 - Xcc-8004.2348.1 0.76 -2.3
2,295,178 - Xcc-8004.2348.1 0.76 -0.9
2,295,178 - Xcc-8004.2348.1 0.76 -0.5
2,295,178 - Xcc-8004.2348.1 0.76 -3.2
2,295,178 - Xcc-8004.2348.1 0.76 -1.3
2,295,178 - Xcc-8004.2348.1 0.76 +0.0
2,295,252 + Xcc-8004.2348.1 0.82 -1.2
2,295,252 + Xcc-8004.2348.1 0.82 -1.1
2,295,252 + Xcc-8004.2348.1 0.82 +0.1
2,295,253 - Xcc-8004.2348.1 0.82 -2.4
2,295,253 - Xcc-8004.2348.1 0.82 -0.4
2,295,270 + Xcc-8004.2348.1 0.84 -0.7
2,295,271 - Xcc-8004.2348.1 0.84 -2.5
2,295,271 - Xcc-8004.2348.1 0.84 -1.3
2,295,360 + -1.8
2,295,360 + -0.9
2,295,360 + -0.6
2,295,361 - -0.6
2,295,446 - -0.5
2,295,503 + +0.6
2,295,503 + -0.3
2,295,503 + -0.7
2,295,503 + +1.0
2,295,504 - -1.1
2,295,504 - -0.5
2,295,624 + -3.3
2,295,675 + -2.4
2,295,676 - -1.9
2,295,676 - -2.5
2,295,676 - -1.2
2,295,676 - -1.8
2,295,678 + -2.5
2,295,678 + -0.8
2,295,678 + -1.7
2,295,679 - -2.3
2,295,679 - -1.3
2,295,679 - -1.7
2,295,921 + Xcc-8004.2349.1 0.39 +0.2
2,295,922 - Xcc-8004.2349.1 0.39 -0.2
2,295,922 - Xcc-8004.2349.1 0.39 -2.3
2,295,922 - Xcc-8004.2349.1 0.39 -1.1
2,295,922 - Xcc-8004.2349.1 0.39 -1.6
2,295,922 - Xcc-8004.2349.1 0.39 -1.8
2,295,924 + Xcc-8004.2349.1 0.40 -2.6
2,295,924 + Xcc-8004.2349.1 0.40 -2.1
2,295,924 + Xcc-8004.2349.1 0.40 -2.4
2,295,925 - Xcc-8004.2349.1 0.40 -1.1
2,295,970 - Xcc-8004.2349.1 0.45 -0.8
2,295,970 - Xcc-8004.2349.1 0.45 -0.5
2,296,035 + Xcc-8004.2349.1 0.54 -3.1
2,296,035 + Xcc-8004.2349.1 0.54 -1.2
2,296,035 + Xcc-8004.2349.1 0.54 -0.5
2,296,036 - Xcc-8004.2349.1 0.54 -1.2
2,296,078 + Xcc-8004.2349.1 0.59 -2.5
2,296,078 + Xcc-8004.2349.1 0.59 -1.6
2,296,079 - Xcc-8004.2349.1 0.59 +0.6
2,296,079 - Xcc-8004.2349.1 0.59 -0.2
2,296,146 + Xcc-8004.2349.1 0.67 -3.4
2,296,242 + Xcc-8004.2349.1 0.79 -1.8
2,296,243 - Xcc-8004.2349.1 0.80 -1.3
2,296,404 + +0.9
2,296,404 + -1.0
2,296,404 + +0.2
2,296,404 + +0.1
2,296,404 + +1.4
2,296,405 - +0.6
2,296,405 - +1.1
2,296,405 - +0.5
2,296,478 + +0.0
2,296,478 + -0.3
2,296,479 - +0.7
2,296,479 - +0.2
2,296,479 - -0.6
2,296,551 + -0.4
2,296,618 + +0.0
2,296,672 - -0.1
2,296,725 + -0.0
2,296,725 + -0.0
2,296,726 - +0.3
2,296,866 - Xcc-8004.2350.1 0.24 +0.5
2,296,866 - Xcc-8004.2350.1 0.24 +0.0
2,296,866 - Xcc-8004.2350.1 0.24 -0.7
2,296,866 - Xcc-8004.2350.1 0.24 -0.9
2,296,866 - Xcc-8004.2350.1 0.24 +0.7
2,296,923 - Xcc-8004.2350.1 0.31 -0.7
2,296,923 - Xcc-8004.2350.1 0.31 -0.4
2,297,058 + Xcc-8004.2350.1 0.48 +0.2
2,297,058 + Xcc-8004.2350.1 0.48 +0.3
2,297,058 + Xcc-8004.2350.1 0.48 +0.6
2,297,058 + Xcc-8004.2350.1 0.48 -2.4
2,297,058 + Xcc-8004.2350.1 0.48 +0.2
2,297,059 - Xcc-8004.2350.1 0.48 -0.9
2,297,059 - Xcc-8004.2350.1 0.48 +0.3
2,297,059 - Xcc-8004.2350.1 0.48 +0.6
2,297,059 - Xcc-8004.2350.1 0.48 +0.7
2,297,059 - Xcc-8004.2350.1 0.48 -1.2
2,297,059 - Xcc-8004.2350.1 0.48 +0.8
2,297,059 - Xcc-8004.2350.1 0.48 +0.8
2,297,142 + Xcc-8004.2350.1 0.59 +0.6
2,297,142 + Xcc-8004.2350.1 0.59 -0.2
2,297,143 - Xcc-8004.2350.1 0.59 +0.3
2,297,162 - Xcc-8004.2350.1 0.61 -1.6
2,297,217 + Xcc-8004.2350.1 0.68 +0.2
2,297,217 + Xcc-8004.2350.1 0.68 +1.6
2,297,217 + Xcc-8004.2350.1 0.68 -0.7
2,297,218 - Xcc-8004.2350.1 0.68 -0.4
2,297,310 + Xcc-8004.2350.1 0.80 +0.3
2,297,311 - Xcc-8004.2350.1 0.80 -0.2
2,297,311 - Xcc-8004.2350.1 0.80 +0.0
2,297,328 + Xcc-8004.2350.1 0.82 +0.7
2,297,328 + Xcc-8004.2350.1 0.82 +0.6
2,297,328 + Xcc-8004.2350.1 0.82 -0.3
2,297,328 + Xcc-8004.2350.1 0.82 -0.8
2,297,328 + Xcc-8004.2350.1 0.82 -1.2
2,297,328 + Xcc-8004.2350.1 0.82 -0.7
2,297,329 - Xcc-8004.2350.1 0.82 +1.9
2,297,329 - Xcc-8004.2350.1 0.82 -0.1
2,297,368 - Xcc-8004.2350.1 0.87 +0.5

Or see this region's nucleotide sequence