Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2066.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2065.1 and Xcc-8004.2066.1 are separated by 200 nucleotidesXcc-8004.2066.1 and Xcc-8004.2067.1 are separated by 314 nucleotides Xcc-8004.2065.1: Xcc-8004.2065.1 - Cyclomaltodextrin glucanotransferase, at 1,982,008 to 1,983,681 Xcc-8004.2065.1 Xcc-8004.2066.1: Xcc-8004.2066.1 - Transcriptional regulator of maltose utilization, LacI family, at 1,983,882 to 1,985,015 Xcc-8004.2066.1 Xcc-8004.2067.1: Xcc-8004.2067.1 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 1,985,330 to 1,987,240 Xcc-8004.2067.1 Position (kb) 1983 1984 1985 1986Strain fitness (log2 ratio) -2 -1 0 1 2at 1982.991 kb on - strand, within Xcc-8004.2065.1at 1983.046 kb on + strand, within Xcc-8004.2065.1at 1983.046 kb on + strand, within Xcc-8004.2065.1at 1983.046 kb on + strand, within Xcc-8004.2065.1at 1983.047 kb on - strand, within Xcc-8004.2065.1at 1983.094 kb on + strand, within Xcc-8004.2065.1at 1983.094 kb on + strand, within Xcc-8004.2065.1at 1983.095 kb on - strand, within Xcc-8004.2065.1at 1983.095 kb on - strand, within Xcc-8004.2065.1at 1983.190 kb on + strand, within Xcc-8004.2065.1at 1983.190 kb on + strand, within Xcc-8004.2065.1at 1983.190 kb on + strand, within Xcc-8004.2065.1at 1983.190 kb on + strand, within Xcc-8004.2065.1at 1983.190 kb on + strand, within Xcc-8004.2065.1at 1983.191 kb on - strand, within Xcc-8004.2065.1at 1983.191 kb on - strand, within Xcc-8004.2065.1at 1983.191 kb on - strand, within Xcc-8004.2065.1at 1983.191 kb on - strand, within Xcc-8004.2065.1at 1983.191 kb on - strand, within Xcc-8004.2065.1at 1983.193 kb on + strand, within Xcc-8004.2065.1at 1983.194 kb on - strand, within Xcc-8004.2065.1at 1983.250 kb on + strand, within Xcc-8004.2065.1at 1983.333 kb on + strand, within Xcc-8004.2065.1at 1983.334 kb on - strand, within Xcc-8004.2065.1at 1983.407 kb on - strand, within Xcc-8004.2065.1at 1983.620 kb on + strandat 1983.621 kb on - strandat 1983.680 kb on - strandat 1983.743 kb on + strandat 1983.743 kb on + strandat 1983.743 kb on + strandat 1983.767 kb on + strandat 1983.767 kb on + strandat 1984.313 kb on + strand, within Xcc-8004.2066.1at 1984.314 kb on - strand, within Xcc-8004.2066.1at 1984.314 kb on - strand, within Xcc-8004.2066.1at 1984.356 kb on + strand, within Xcc-8004.2066.1at 1984.356 kb on + strand, within Xcc-8004.2066.1at 1984.357 kb on - strand, within Xcc-8004.2066.1at 1984.357 kb on - strand, within Xcc-8004.2066.1at 1984.489 kb on + strand, within Xcc-8004.2066.1at 1984.489 kb on + strand, within Xcc-8004.2066.1at 1984.489 kb on + strand, within Xcc-8004.2066.1at 1984.490 kb on - strand, within Xcc-8004.2066.1at 1984.490 kb on - strand, within Xcc-8004.2066.1at 1984.490 kb on - strand, within Xcc-8004.2066.1at 1984.490 kb on - strand, within Xcc-8004.2066.1at 1984.490 kb on - strand, within Xcc-8004.2066.1at 1984.493 kb on + strand, within Xcc-8004.2066.1at 1984.493 kb on + strand, within Xcc-8004.2066.1at 1984.493 kb on + strand, within Xcc-8004.2066.1at 1984.493 kb on + strand, within Xcc-8004.2066.1at 1984.494 kb on - strand, within Xcc-8004.2066.1at 1984.494 kb on - strand, within Xcc-8004.2066.1at 1984.494 kb on - strand, within Xcc-8004.2066.1at 1984.512 kb on - strand, within Xcc-8004.2066.1at 1984.545 kb on + strand, within Xcc-8004.2066.1at 1984.546 kb on - strand, within Xcc-8004.2066.1at 1984.546 kb on - strand, within Xcc-8004.2066.1at 1984.652 kb on - strand, within Xcc-8004.2066.1at 1984.856 kb on + strand, within Xcc-8004.2066.1at 1984.856 kb on + strand, within Xcc-8004.2066.1at 1984.856 kb on + strand, within Xcc-8004.2066.1at 1984.857 kb on - strand, within Xcc-8004.2066.1at 1984.857 kb on - strand, within Xcc-8004.2066.1at 1984.857 kb on - strand, within Xcc-8004.2066.1at 1984.857 kb on - strand, within Xcc-8004.2066.1at 1984.857 kb on - strand, within Xcc-8004.2066.1at 1984.857 kb on - strand, within Xcc-8004.2066.1at 1984.858 kb on + strand, within Xcc-8004.2066.1at 1984.858 kb on + strand, within Xcc-8004.2066.1at 1984.858 kb on + strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.859 kb on - strand, within Xcc-8004.2066.1at 1984.966 kb on + strandat 1984.966 kb on + strandat 1984.967 kb on - strandat 1984.967 kb on - strandat 1984.992 kb on - strandat 1985.094 kb on + strandat 1985.094 kb on + strandat 1985.094 kb on + strandat 1985.094 kb on + strandat 1985.094 kb on + strandat 1985.094 kb on + strandat 1985.095 kb on - strandat 1985.095 kb on - strandat 1985.167 kb on + strandat 1985.167 kb on + strandat 1985.167 kb on + strandat 1985.325 kb on + strandat 1985.325 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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1,982,991 - Xcc-8004.2065.1 0.59 -1.4
1,983,046 + Xcc-8004.2065.1 0.62 +0.3
1,983,046 + Xcc-8004.2065.1 0.62 -1.0
1,983,046 + Xcc-8004.2065.1 0.62 +0.4
1,983,047 - Xcc-8004.2065.1 0.62 -1.2
1,983,094 + Xcc-8004.2065.1 0.65 +0.1
1,983,094 + Xcc-8004.2065.1 0.65 +0.5
1,983,095 - Xcc-8004.2065.1 0.65 -0.2
1,983,095 - Xcc-8004.2065.1 0.65 +0.0
1,983,190 + Xcc-8004.2065.1 0.71 +0.4
1,983,190 + Xcc-8004.2065.1 0.71 -0.9
1,983,190 + Xcc-8004.2065.1 0.71 -0.0
1,983,190 + Xcc-8004.2065.1 0.71 +0.5
1,983,190 + Xcc-8004.2065.1 0.71 +0.2
1,983,191 - Xcc-8004.2065.1 0.71 +0.1
1,983,191 - Xcc-8004.2065.1 0.71 -1.1
1,983,191 - Xcc-8004.2065.1 0.71 +0.0
1,983,191 - Xcc-8004.2065.1 0.71 -0.7
1,983,191 - Xcc-8004.2065.1 0.71 +1.4
1,983,193 + Xcc-8004.2065.1 0.71 +0.4
1,983,194 - Xcc-8004.2065.1 0.71 -0.8
1,983,250 + Xcc-8004.2065.1 0.74 +0.2
1,983,333 + Xcc-8004.2065.1 0.79 +2.2
1,983,334 - Xcc-8004.2065.1 0.79 +0.8
1,983,407 - Xcc-8004.2065.1 0.84 -0.4
1,983,620 + +0.0
1,983,621 - -0.5
1,983,680 - +0.0
1,983,743 + +2.0
1,983,743 + -1.9
1,983,743 + -0.9
1,983,767 + -0.1
1,983,767 + -0.5
1,984,313 + Xcc-8004.2066.1 0.38 -1.9
1,984,314 - Xcc-8004.2066.1 0.38 +1.1
1,984,314 - Xcc-8004.2066.1 0.38 +0.3
1,984,356 + Xcc-8004.2066.1 0.42 -0.2
1,984,356 + Xcc-8004.2066.1 0.42 -0.2
1,984,357 - Xcc-8004.2066.1 0.42 -0.9
1,984,357 - Xcc-8004.2066.1 0.42 +0.2
1,984,489 + Xcc-8004.2066.1 0.54 -0.3
1,984,489 + Xcc-8004.2066.1 0.54 +0.3
1,984,489 + Xcc-8004.2066.1 0.54 +0.0
1,984,490 - Xcc-8004.2066.1 0.54 +0.4
1,984,490 - Xcc-8004.2066.1 0.54 -0.5
1,984,490 - Xcc-8004.2066.1 0.54 +0.4
1,984,490 - Xcc-8004.2066.1 0.54 -0.5
1,984,490 - Xcc-8004.2066.1 0.54 +1.1
1,984,493 + Xcc-8004.2066.1 0.54 -0.8
1,984,493 + Xcc-8004.2066.1 0.54 -1.6
1,984,493 + Xcc-8004.2066.1 0.54 +0.1
1,984,493 + Xcc-8004.2066.1 0.54 +0.4
1,984,494 - Xcc-8004.2066.1 0.54 +1.6
1,984,494 - Xcc-8004.2066.1 0.54 -1.2
1,984,494 - Xcc-8004.2066.1 0.54 -0.7
1,984,512 - Xcc-8004.2066.1 0.56 +0.0
1,984,545 + Xcc-8004.2066.1 0.58 +1.8
1,984,546 - Xcc-8004.2066.1 0.59 -0.7
1,984,546 - Xcc-8004.2066.1 0.59 +0.3
1,984,652 - Xcc-8004.2066.1 0.68 +0.3
1,984,856 + Xcc-8004.2066.1 0.86 -0.4
1,984,856 + Xcc-8004.2066.1 0.86 -0.7
1,984,856 + Xcc-8004.2066.1 0.86 +1.0
1,984,857 - Xcc-8004.2066.1 0.86 -1.1
1,984,857 - Xcc-8004.2066.1 0.86 +0.2
1,984,857 - Xcc-8004.2066.1 0.86 +0.3
1,984,857 - Xcc-8004.2066.1 0.86 -0.1
1,984,857 - Xcc-8004.2066.1 0.86 +0.6
1,984,857 - Xcc-8004.2066.1 0.86 -1.0
1,984,858 + Xcc-8004.2066.1 0.86 +0.2
1,984,858 + Xcc-8004.2066.1 0.86 -1.3
1,984,858 + Xcc-8004.2066.1 0.86 -0.6
1,984,859 - Xcc-8004.2066.1 0.86 -1.2
1,984,859 - Xcc-8004.2066.1 0.86 -0.3
1,984,859 - Xcc-8004.2066.1 0.86 +0.1
1,984,859 - Xcc-8004.2066.1 0.86 -2.6
1,984,859 - Xcc-8004.2066.1 0.86 -0.1
1,984,859 - Xcc-8004.2066.1 0.86 -0.9
1,984,859 - Xcc-8004.2066.1 0.86 +0.2
1,984,859 - Xcc-8004.2066.1 0.86 -2.2
1,984,859 - Xcc-8004.2066.1 0.86 +0.4
1,984,966 + -0.3
1,984,966 + -0.6
1,984,967 - -1.2
1,984,967 - -0.6
1,984,992 - -0.5
1,985,094 + -0.4
1,985,094 + +0.1
1,985,094 + +0.2
1,985,094 + +0.2
1,985,094 + +0.2
1,985,094 + +0.6
1,985,095 - +0.0
1,985,095 - +0.5
1,985,167 + +0.6
1,985,167 + -0.7
1,985,167 + +0.2
1,985,325 + -1.6
1,985,325 + -0.4

Or see this region's nucleotide sequence