Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2057.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2056.1 and Xcc-8004.2057.1 are separated by 265 nucleotidesXcc-8004.2057.1 and Xcc-8004.2059.1 are separated by 211 nucleotidesXcc-8004.2059.1 and Xcc-8004.2060.1 overlap by 10 nucleotides Xcc-8004.2056.1: Xcc-8004.2056.1 - Mobile element protein, at 1,967,532 to 1,968,956 Xcc-8004.2056.1 Xcc-8004.2057.1: Xcc-8004.2057.1 - Maltodextrin glucosidase (EC 3.2.1.20), at 1,969,222 to 1,970,838 Xcc-8004.2057.1 Xcc-8004.2059.1: Xcc-8004.2059.1 - hypothetical protein, at 1,971,050 to 1,971,169 Xcc-8004.2059.1 Xcc-8004.2060.1: Xcc-8004.2060.1 - Mobile element protein, at 1,971,160 to 1,972,140 Xcc-8004.2060.1 Position (kb) 1969 1970 1971Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1968.978 kb on + strandat 1968.978 kb on + strandat 1969.057 kb on + strandat 1969.057 kb on + strandat 1969.057 kb on + strandat 1969.079 kb on + strandat 1969.095 kb on - strandat 1969.095 kb on - strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.122 kb on + strandat 1969.123 kb on - strandat 1969.123 kb on - strandat 1969.126 kb on + strandat 1969.126 kb on + strandat 1969.126 kb on + strandat 1969.127 kb on - strandat 1969.127 kb on - strandat 1969.127 kb on - strandat 1969.160 kb on + strandat 1969.160 kb on + strandat 1969.160 kb on + strandat 1969.161 kb on - strandat 1969.219 kb on + strandat 1969.219 kb on + strandat 1969.219 kb on + strandat 1969.219 kb on + strandat 1969.220 kb on - strandat 1969.220 kb on - strandat 1969.220 kb on - strandat 1969.220 kb on - strandat 1969.220 kb on - strandat 1969.220 kb on - strandat 1969.220 kb on - strandat 1969.220 kb on - strandat 1969.221 kb on + strandat 1969.221 kb on + strandat 1969.221 kb on + strandat 1969.221 kb on + strandat 1969.221 kb on + strandat 1969.222 kb on - strandat 1969.222 kb on - strandat 1969.222 kb on - strandat 1969.222 kb on - strandat 1969.222 kb on - strandat 1969.222 kb on - strandat 1969.259 kb on - strandat 1969.267 kb on + strandat 1969.275 kb on + strandat 1969.426 kb on + strand, within Xcc-8004.2057.1at 1969.426 kb on + strand, within Xcc-8004.2057.1at 1969.426 kb on + strand, within Xcc-8004.2057.1at 1969.523 kb on + strand, within Xcc-8004.2057.1at 1969.524 kb on - strand, within Xcc-8004.2057.1at 1969.524 kb on - strand, within Xcc-8004.2057.1at 1969.600 kb on + strand, within Xcc-8004.2057.1at 1969.600 kb on + strand, within Xcc-8004.2057.1at 1969.600 kb on + strand, within Xcc-8004.2057.1at 1969.600 kb on + strand, within Xcc-8004.2057.1at 1969.600 kb on + strand, within Xcc-8004.2057.1at 1969.600 kb on + strand, within Xcc-8004.2057.1at 1969.600 kb on + strand, within Xcc-8004.2057.1at 1969.601 kb on - strand, within Xcc-8004.2057.1at 1969.601 kb on - strand, within Xcc-8004.2057.1at 1969.700 kb on - strand, within Xcc-8004.2057.1at 1969.700 kb on - strand, within Xcc-8004.2057.1at 1969.700 kb on - strand, within Xcc-8004.2057.1at 1969.700 kb on - strand, within Xcc-8004.2057.1at 1969.702 kb on + strand, within Xcc-8004.2057.1at 1969.702 kb on + strand, within Xcc-8004.2057.1at 1969.702 kb on + strand, within Xcc-8004.2057.1at 1969.703 kb on - strand, within Xcc-8004.2057.1at 1969.703 kb on - strand, within Xcc-8004.2057.1at 1969.703 kb on - strand, within Xcc-8004.2057.1at 1969.703 kb on - strand, within Xcc-8004.2057.1at 1969.922 kb on - strand, within Xcc-8004.2057.1at 1969.933 kb on + strand, within Xcc-8004.2057.1at 1969.934 kb on - strand, within Xcc-8004.2057.1at 1969.939 kb on + strand, within Xcc-8004.2057.1at 1969.939 kb on + strand, within Xcc-8004.2057.1at 1969.940 kb on - strand, within Xcc-8004.2057.1at 1969.940 kb on - strand, within Xcc-8004.2057.1at 1969.940 kb on - strand, within Xcc-8004.2057.1at 1970.069 kb on - strand, within Xcc-8004.2057.1at 1970.091 kb on + strand, within Xcc-8004.2057.1at 1970.092 kb on - strand, within Xcc-8004.2057.1at 1970.092 kb on - strand, within Xcc-8004.2057.1at 1970.098 kb on + strand, within Xcc-8004.2057.1at 1970.099 kb on - strand, within Xcc-8004.2057.1at 1970.125 kb on + strand, within Xcc-8004.2057.1at 1970.137 kb on + strand, within Xcc-8004.2057.1at 1970.137 kb on + strand, within Xcc-8004.2057.1at 1970.153 kb on + strand, within Xcc-8004.2057.1at 1970.153 kb on + strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.217 kb on - strand, within Xcc-8004.2057.1at 1970.217 kb on - strand, within Xcc-8004.2057.1at 1970.217 kb on - strand, within Xcc-8004.2057.1at 1970.315 kb on + strand, within Xcc-8004.2057.1at 1970.316 kb on - strand, within Xcc-8004.2057.1at 1970.317 kb on + strand, within Xcc-8004.2057.1at 1970.317 kb on + strand, within Xcc-8004.2057.1at 1970.318 kb on - strand, within Xcc-8004.2057.1at 1970.318 kb on - strand, within Xcc-8004.2057.1at 1970.318 kb on - strand, within Xcc-8004.2057.1at 1970.318 kb on - strand, within Xcc-8004.2057.1at 1970.561 kb on + strand, within Xcc-8004.2057.1at 1970.623 kb on + strand, within Xcc-8004.2057.1at 1970.753 kb on + strandat 1970.753 kb on + strandat 1970.792 kb on + strandat 1970.792 kb on + strandat 1970.792 kb on + strandat 1970.792 kb on + strandat 1970.793 kb on - strandat 1970.793 kb on - strandat 1970.793 kb on - strandat 1970.793 kb on - strandat 1970.793 kb on - strandat 1970.841 kb on - strandat 1970.841 kb on - strandat 1970.875 kb on - strandat 1970.875 kb on - strandat 1971.095 kb on - strand, within Xcc-8004.2059.1at 1971.095 kb on - strand, within Xcc-8004.2059.1at 1971.124 kb on - strand, within Xcc-8004.2059.1at 1971.621 kb on + strand, within Xcc-8004.2060.1at 1971.621 kb on + strand, within Xcc-8004.2060.1at 1971.621 kb on + strand, within Xcc-8004.2060.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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1,968,978 + -2.3
1,968,978 + -0.2
1,969,057 + -0.9
1,969,057 + +0.1
1,969,057 + -0.6
1,969,079 + +1.8
1,969,095 - +0.0
1,969,095 - -0.6
1,969,122 + -0.5
1,969,122 + -0.1
1,969,122 + +0.9
1,969,122 + -0.8
1,969,122 + -0.1
1,969,122 + +0.7
1,969,122 + +2.1
1,969,122 + +0.4
1,969,122 + -0.4
1,969,122 + +0.2
1,969,122 + +1.6
1,969,122 + -0.1
1,969,123 - +0.6
1,969,123 - +0.9
1,969,126 + -1.4
1,969,126 + -0.8
1,969,126 + +0.2
1,969,127 - -0.5
1,969,127 - +0.4
1,969,127 - -2.2
1,969,160 + +1.6
1,969,160 + +0.5
1,969,160 + +0.7
1,969,161 - +0.5
1,969,219 + -0.8
1,969,219 + -0.4
1,969,219 + -1.0
1,969,219 + -0.1
1,969,220 - -0.7
1,969,220 - +0.7
1,969,220 - +0.4
1,969,220 - -0.3
1,969,220 - -0.4
1,969,220 - +0.4
1,969,220 - -1.8
1,969,220 - -0.2
1,969,221 + -0.1
1,969,221 + +0.3
1,969,221 + +0.2
1,969,221 + +1.1
1,969,221 + -1.5
1,969,222 - +0.3
1,969,222 - -1.3
1,969,222 - +0.3
1,969,222 - -0.4
1,969,222 - -1.0
1,969,222 - -0.7
1,969,259 - +0.7
1,969,267 + -2.7
1,969,275 + -0.1
1,969,426 + Xcc-8004.2057.1 0.13 -0.7
1,969,426 + Xcc-8004.2057.1 0.13 -0.8
1,969,426 + Xcc-8004.2057.1 0.13 -0.8
1,969,523 + Xcc-8004.2057.1 0.19 -0.7
1,969,524 - Xcc-8004.2057.1 0.19 -0.1
1,969,524 - Xcc-8004.2057.1 0.19 +0.2
1,969,600 + Xcc-8004.2057.1 0.23 -0.3
1,969,600 + Xcc-8004.2057.1 0.23 -1.2
1,969,600 + Xcc-8004.2057.1 0.23 -0.4
1,969,600 + Xcc-8004.2057.1 0.23 +0.0
1,969,600 + Xcc-8004.2057.1 0.23 +1.1
1,969,600 + Xcc-8004.2057.1 0.23 +0.4
1,969,600 + Xcc-8004.2057.1 0.23 +0.1
1,969,601 - Xcc-8004.2057.1 0.23 +1.0
1,969,601 - Xcc-8004.2057.1 0.23 +0.3
1,969,700 - Xcc-8004.2057.1 0.30 +0.3
1,969,700 - Xcc-8004.2057.1 0.30 -0.4
1,969,700 - Xcc-8004.2057.1 0.30 +0.0
1,969,700 - Xcc-8004.2057.1 0.30 +0.5
1,969,702 + Xcc-8004.2057.1 0.30 -1.1
1,969,702 + Xcc-8004.2057.1 0.30 -1.3
1,969,702 + Xcc-8004.2057.1 0.30 -1.5
1,969,703 - Xcc-8004.2057.1 0.30 +0.6
1,969,703 - Xcc-8004.2057.1 0.30 -0.6
1,969,703 - Xcc-8004.2057.1 0.30 +0.0
1,969,703 - Xcc-8004.2057.1 0.30 -0.5
1,969,922 - Xcc-8004.2057.1 0.43 +0.3
1,969,933 + Xcc-8004.2057.1 0.44 +0.3
1,969,934 - Xcc-8004.2057.1 0.44 +1.3
1,969,939 + Xcc-8004.2057.1 0.44 +0.7
1,969,939 + Xcc-8004.2057.1 0.44 -0.3
1,969,940 - Xcc-8004.2057.1 0.44 +0.2
1,969,940 - Xcc-8004.2057.1 0.44 +0.2
1,969,940 - Xcc-8004.2057.1 0.44 +1.9
1,970,069 - Xcc-8004.2057.1 0.52 +0.8
1,970,091 + Xcc-8004.2057.1 0.54 -0.3
1,970,092 - Xcc-8004.2057.1 0.54 +0.1
1,970,092 - Xcc-8004.2057.1 0.54 +0.0
1,970,098 + Xcc-8004.2057.1 0.54 +0.0
1,970,099 - Xcc-8004.2057.1 0.54 +0.8
1,970,125 + Xcc-8004.2057.1 0.56 -1.6
1,970,137 + Xcc-8004.2057.1 0.57 -1.0
1,970,137 + Xcc-8004.2057.1 0.57 -0.1
1,970,153 + Xcc-8004.2057.1 0.58 +0.1
1,970,153 + Xcc-8004.2057.1 0.58 -1.0
1,970,154 - Xcc-8004.2057.1 0.58 -0.6
1,970,154 - Xcc-8004.2057.1 0.58 -0.0
1,970,154 - Xcc-8004.2057.1 0.58 -0.6
1,970,154 - Xcc-8004.2057.1 0.58 -2.8
1,970,154 - Xcc-8004.2057.1 0.58 +0.6
1,970,154 - Xcc-8004.2057.1 0.58 +1.0
1,970,217 - Xcc-8004.2057.1 0.62 -0.2
1,970,217 - Xcc-8004.2057.1 0.62 -0.9
1,970,217 - Xcc-8004.2057.1 0.62 +0.4
1,970,315 + Xcc-8004.2057.1 0.68 +0.7
1,970,316 - Xcc-8004.2057.1 0.68 -2.1
1,970,317 + Xcc-8004.2057.1 0.68 -0.4
1,970,317 + Xcc-8004.2057.1 0.68 -0.0
1,970,318 - Xcc-8004.2057.1 0.68 +0.5
1,970,318 - Xcc-8004.2057.1 0.68 +1.6
1,970,318 - Xcc-8004.2057.1 0.68 -1.4
1,970,318 - Xcc-8004.2057.1 0.68 +0.0
1,970,561 + Xcc-8004.2057.1 0.83 +0.0
1,970,623 + Xcc-8004.2057.1 0.87 +0.1
1,970,753 + -0.8
1,970,753 + +0.1
1,970,792 + -0.1
1,970,792 + -0.4
1,970,792 + -1.0
1,970,792 + -0.4
1,970,793 - -0.6
1,970,793 - +0.6
1,970,793 - +0.9
1,970,793 - -0.1
1,970,793 - +1.0
1,970,841 - +0.7
1,970,841 - +0.4
1,970,875 - +0.9
1,970,875 - -0.2
1,971,095 - Xcc-8004.2059.1 0.38 +0.4
1,971,095 - Xcc-8004.2059.1 0.38 -0.0
1,971,124 - Xcc-8004.2059.1 0.62 -1.0
1,971,621 + Xcc-8004.2060.1 0.47 -0.9
1,971,621 + Xcc-8004.2060.1 0.47 -0.4
1,971,621 + Xcc-8004.2060.1 0.47 -0.5

Or see this region's nucleotide sequence