Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4154

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4153 and Pf6N2E2_4154 are separated by 19 nucleotidesPf6N2E2_4154 and Pf6N2E2_4155 are separated by 183 nucleotides Pf6N2E2_4153 - Sensory box histidine kinase, at 4,832,982 to 4,834,772 _4153 Pf6N2E2_4154 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 4,834,792 to 4,836,297 _4154 Pf6N2E2_4155 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 4,836,481 to 4,837,260 _4155 Position (kb) 4834 4835 4836 4837Strain fitness (log2 ratio) -2 -1 0 1 2at 4834.752 kb on + strandat 4834.752 kb on + strandat 4834.922 kb on + strandat 4834.922 kb on + strandat 4834.922 kb on + strandat 4834.922 kb on + strandat 4834.922 kb on + strandat 4834.922 kb on + strandat 4834.923 kb on - strandat 4834.923 kb on - strandat 4834.923 kb on - strandat 4834.923 kb on - strandat 4834.995 kb on + strand, within Pf6N2E2_4154at 4834.995 kb on + strand, within Pf6N2E2_4154at 4834.995 kb on + strand, within Pf6N2E2_4154at 4834.996 kb on - strand, within Pf6N2E2_4154at 4835.091 kb on - strand, within Pf6N2E2_4154at 4835.091 kb on - strand, within Pf6N2E2_4154at 4835.274 kb on + strand, within Pf6N2E2_4154at 4835.275 kb on - strand, within Pf6N2E2_4154at 4835.316 kb on + strand, within Pf6N2E2_4154at 4835.316 kb on + strand, within Pf6N2E2_4154at 4835.316 kb on + strand, within Pf6N2E2_4154at 4835.316 kb on + strand, within Pf6N2E2_4154at 4835.316 kb on + strand, within Pf6N2E2_4154at 4835.316 kb on + strand, within Pf6N2E2_4154at 4835.316 kb on + strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.317 kb on - strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.318 kb on + strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.319 kb on - strand, within Pf6N2E2_4154at 4835.496 kb on + strand, within Pf6N2E2_4154at 4835.496 kb on + strand, within Pf6N2E2_4154at 4835.496 kb on + strand, within Pf6N2E2_4154at 4835.496 kb on + strand, within Pf6N2E2_4154at 4835.496 kb on + strand, within Pf6N2E2_4154at 4835.496 kb on + strand, within Pf6N2E2_4154at 4835.497 kb on - strand, within Pf6N2E2_4154at 4835.497 kb on - strand, within Pf6N2E2_4154at 4835.517 kb on + strand, within Pf6N2E2_4154at 4835.518 kb on - strand, within Pf6N2E2_4154at 4835.518 kb on - strand, within Pf6N2E2_4154at 4835.518 kb on - strand, within Pf6N2E2_4154at 4835.676 kb on + strand, within Pf6N2E2_4154at 4835.676 kb on + strand, within Pf6N2E2_4154at 4835.676 kb on + strand, within Pf6N2E2_4154at 4835.677 kb on - strand, within Pf6N2E2_4154at 4835.677 kb on - strand, within Pf6N2E2_4154at 4835.711 kb on + strand, within Pf6N2E2_4154at 4835.712 kb on - strand, within Pf6N2E2_4154at 4835.712 kb on - strand, within Pf6N2E2_4154at 4835.738 kb on + strand, within Pf6N2E2_4154at 4835.739 kb on - strand, within Pf6N2E2_4154at 4835.844 kb on + strand, within Pf6N2E2_4154at 4835.884 kb on + strand, within Pf6N2E2_4154at 4835.885 kb on - strand, within Pf6N2E2_4154at 4835.885 kb on - strand, within Pf6N2E2_4154at 4835.996 kb on + strand, within Pf6N2E2_4154at 4835.996 kb on + strand, within Pf6N2E2_4154at 4835.997 kb on - strand, within Pf6N2E2_4154at 4835.997 kb on - strand, within Pf6N2E2_4154at 4835.997 kb on - strand, within Pf6N2E2_4154at 4835.997 kb on - strand, within Pf6N2E2_4154at 4836.002 kb on + strand, within Pf6N2E2_4154at 4836.003 kb on - strand, within Pf6N2E2_4154at 4836.087 kb on + strand, within Pf6N2E2_4154at 4836.087 kb on + strand, within Pf6N2E2_4154at 4836.089 kb on + strand, within Pf6N2E2_4154at 4836.089 kb on + strand, within Pf6N2E2_4154at 4836.089 kb on + strand, within Pf6N2E2_4154at 4836.089 kb on + strand, within Pf6N2E2_4154at 4836.090 kb on - strand, within Pf6N2E2_4154at 4836.090 kb on - strand, within Pf6N2E2_4154at 4836.090 kb on - strand, within Pf6N2E2_4154at 4836.090 kb on - strand, within Pf6N2E2_4154at 4836.090 kb on - strand, within Pf6N2E2_4154at 4836.090 kb on - strand, within Pf6N2E2_4154at 4836.102 kb on - strand, within Pf6N2E2_4154at 4836.327 kb on + strandat 4836.327 kb on + strandat 4836.327 kb on + strandat 4836.327 kb on + strandat 4836.327 kb on + strandat 4836.328 kb on - strandat 4836.328 kb on - strandat 4836.331 kb on + strandat 4836.331 kb on + strandat 4836.332 kb on - strandat 4836.353 kb on - strandat 4836.382 kb on + strandat 4836.382 kb on + strandat 4836.382 kb on + strandat 4836.425 kb on - strandat 4836.436 kb on - strandat 4836.482 kb on + strandat 4836.557 kb on + strandat 4836.730 kb on + strand, within Pf6N2E2_4155at 4836.730 kb on + strand, within Pf6N2E2_4155at 4836.731 kb on - strand, within Pf6N2E2_4155at 4836.731 kb on - strand, within Pf6N2E2_4155at 4836.862 kb on + strand, within Pf6N2E2_4155at 4836.862 kb on + strand, within Pf6N2E2_4155at 4836.862 kb on + strand, within Pf6N2E2_4155at 4836.862 kb on + strand, within Pf6N2E2_4155at 4836.862 kb on + strand, within Pf6N2E2_4155at 4836.863 kb on - strand, within Pf6N2E2_4155at 4836.863 kb on - strand, within Pf6N2E2_4155at 4836.894 kb on - strand, within Pf6N2E2_4155at 4836.894 kb on - strand, within Pf6N2E2_4155at 4836.899 kb on + strand, within Pf6N2E2_4155at 4837.040 kb on + strand, within Pf6N2E2_4155at 4837.040 kb on + strand, within Pf6N2E2_4155at 4837.041 kb on - strand, within Pf6N2E2_4155at 4837.041 kb on - strand, within Pf6N2E2_4155at 4837.074 kb on - strand, within Pf6N2E2_4155at 4837.074 kb on - strand, within Pf6N2E2_4155at 4837.136 kb on + strand, within Pf6N2E2_4155at 4837.136 kb on + strand, within Pf6N2E2_4155at 4837.136 kb on + strand, within Pf6N2E2_4155at 4837.136 kb on + strand, within Pf6N2E2_4155at 4837.136 kb on + strand, within Pf6N2E2_4155at 4837.136 kb on + strand, within Pf6N2E2_4155at 4837.136 kb on + strand, within Pf6N2E2_4155at 4837.136 kb on + strand, within Pf6N2E2_4155at 4837.137 kb on - strand, within Pf6N2E2_4155at 4837.137 kb on - strand, within Pf6N2E2_4155at 4837.137 kb on - strand, within Pf6N2E2_4155at 4837.137 kb on - strand, within Pf6N2E2_4155at 4837.137 kb on - strand, within Pf6N2E2_4155at 4837.137 kb on - strand, within Pf6N2E2_4155at 4837.137 kb on - strand, within Pf6N2E2_4155at 4837.158 kb on + strand, within Pf6N2E2_4155at 4837.159 kb on - strand, within Pf6N2E2_4155at 4837.231 kb on + strandat 4837.231 kb on + strandat 4837.232 kb on - strandat 4837.232 kb on - strandat 4837.232 kb on - strandat 4837.232 kb on - strandat 4837.232 kb on - strandat 4837.273 kb on + strandat 4837.274 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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4,834,752 + -0.4
4,834,752 + +1.2
4,834,922 + +0.0
4,834,922 + +0.3
4,834,922 + -0.4
4,834,922 + +0.0
4,834,922 + +0.6
4,834,922 + -0.8
4,834,923 - -0.0
4,834,923 - +0.7
4,834,923 - +1.6
4,834,923 - +0.5
4,834,995 + Pf6N2E2_4154 0.13 -1.4
4,834,995 + Pf6N2E2_4154 0.13 -1.4
4,834,995 + Pf6N2E2_4154 0.13 +0.2
4,834,996 - Pf6N2E2_4154 0.14 +1.0
4,835,091 - Pf6N2E2_4154 0.20 -0.8
4,835,091 - Pf6N2E2_4154 0.20 -0.9
4,835,274 + Pf6N2E2_4154 0.32 -0.4
4,835,275 - Pf6N2E2_4154 0.32 -0.4
4,835,316 + Pf6N2E2_4154 0.35 +0.1
4,835,316 + Pf6N2E2_4154 0.35 +0.2
4,835,316 + Pf6N2E2_4154 0.35 -0.5
4,835,316 + Pf6N2E2_4154 0.35 -0.2
4,835,316 + Pf6N2E2_4154 0.35 +0.0
4,835,316 + Pf6N2E2_4154 0.35 -0.7
4,835,316 + Pf6N2E2_4154 0.35 -0.2
4,835,317 - Pf6N2E2_4154 0.35 +0.4
4,835,317 - Pf6N2E2_4154 0.35 -1.0
4,835,317 - Pf6N2E2_4154 0.35 -0.7
4,835,317 - Pf6N2E2_4154 0.35 +0.1
4,835,317 - Pf6N2E2_4154 0.35 -0.6
4,835,317 - Pf6N2E2_4154 0.35 -1.4
4,835,317 - Pf6N2E2_4154 0.35 +0.3
4,835,317 - Pf6N2E2_4154 0.35 +0.6
4,835,317 - Pf6N2E2_4154 0.35 -0.4
4,835,317 - Pf6N2E2_4154 0.35 +0.9
4,835,317 - Pf6N2E2_4154 0.35 +0.9
4,835,318 + Pf6N2E2_4154 0.35 +0.1
4,835,318 + Pf6N2E2_4154 0.35 -0.2
4,835,318 + Pf6N2E2_4154 0.35 -0.4
4,835,318 + Pf6N2E2_4154 0.35 +0.4
4,835,318 + Pf6N2E2_4154 0.35 -0.8
4,835,318 + Pf6N2E2_4154 0.35 +0.2
4,835,318 + Pf6N2E2_4154 0.35 -0.2
4,835,318 + Pf6N2E2_4154 0.35 -0.7
4,835,318 + Pf6N2E2_4154 0.35 -0.7
4,835,318 + Pf6N2E2_4154 0.35 -0.1
4,835,318 + Pf6N2E2_4154 0.35 -0.4
4,835,318 + Pf6N2E2_4154 0.35 -0.6
4,835,318 + Pf6N2E2_4154 0.35 +0.1
4,835,318 + Pf6N2E2_4154 0.35 +0.2
4,835,318 + Pf6N2E2_4154 0.35 +0.6
4,835,318 + Pf6N2E2_4154 0.35 -2.2
4,835,318 + Pf6N2E2_4154 0.35 -1.2
4,835,318 + Pf6N2E2_4154 0.35 -0.2
4,835,318 + Pf6N2E2_4154 0.35 +0.3
4,835,318 + Pf6N2E2_4154 0.35 +0.9
4,835,319 - Pf6N2E2_4154 0.35 +0.4
4,835,319 - Pf6N2E2_4154 0.35 +0.1
4,835,319 - Pf6N2E2_4154 0.35 +0.7
4,835,319 - Pf6N2E2_4154 0.35 -0.7
4,835,319 - Pf6N2E2_4154 0.35 -0.3
4,835,319 - Pf6N2E2_4154 0.35 -0.1
4,835,319 - Pf6N2E2_4154 0.35 +1.0
4,835,319 - Pf6N2E2_4154 0.35 -1.5
4,835,319 - Pf6N2E2_4154 0.35 +0.4
4,835,319 - Pf6N2E2_4154 0.35 +0.0
4,835,319 - Pf6N2E2_4154 0.35 -0.4
4,835,319 - Pf6N2E2_4154 0.35 -0.2
4,835,319 - Pf6N2E2_4154 0.35 -0.2
4,835,319 - Pf6N2E2_4154 0.35 +0.2
4,835,319 - Pf6N2E2_4154 0.35 +0.3
4,835,319 - Pf6N2E2_4154 0.35 +0.0
4,835,319 - Pf6N2E2_4154 0.35 -0.3
4,835,496 + Pf6N2E2_4154 0.47 -0.3
4,835,496 + Pf6N2E2_4154 0.47 -0.3
4,835,496 + Pf6N2E2_4154 0.47 +0.6
4,835,496 + Pf6N2E2_4154 0.47 +1.0
4,835,496 + Pf6N2E2_4154 0.47 +0.3
4,835,496 + Pf6N2E2_4154 0.47 +0.3
4,835,497 - Pf6N2E2_4154 0.47 +0.7
4,835,497 - Pf6N2E2_4154 0.47 -0.2
4,835,517 + Pf6N2E2_4154 0.48 -0.3
4,835,518 - Pf6N2E2_4154 0.48 -1.3
4,835,518 - Pf6N2E2_4154 0.48 +0.4
4,835,518 - Pf6N2E2_4154 0.48 -0.7
4,835,676 + Pf6N2E2_4154 0.59 -1.3
4,835,676 + Pf6N2E2_4154 0.59 -2.3
4,835,676 + Pf6N2E2_4154 0.59 +0.8
4,835,677 - Pf6N2E2_4154 0.59 -0.4
4,835,677 - Pf6N2E2_4154 0.59 -1.3
4,835,711 + Pf6N2E2_4154 0.61 +1.0
4,835,712 - Pf6N2E2_4154 0.61 +0.5
4,835,712 - Pf6N2E2_4154 0.61 -0.5
4,835,738 + Pf6N2E2_4154 0.63 -0.9
4,835,739 - Pf6N2E2_4154 0.63 -0.6
4,835,844 + Pf6N2E2_4154 0.70 -0.7
4,835,884 + Pf6N2E2_4154 0.73 +0.3
4,835,885 - Pf6N2E2_4154 0.73 +0.6
4,835,885 - Pf6N2E2_4154 0.73 +0.1
4,835,996 + Pf6N2E2_4154 0.80 -0.5
4,835,996 + Pf6N2E2_4154 0.80 -0.6
4,835,997 - Pf6N2E2_4154 0.80 +1.2
4,835,997 - Pf6N2E2_4154 0.80 -0.1
4,835,997 - Pf6N2E2_4154 0.80 -0.2
4,835,997 - Pf6N2E2_4154 0.80 +0.1
4,836,002 + Pf6N2E2_4154 0.80 -0.2
4,836,003 - Pf6N2E2_4154 0.80 +0.2
4,836,087 + Pf6N2E2_4154 0.86 -0.7
4,836,087 + Pf6N2E2_4154 0.86 +0.1
4,836,089 + Pf6N2E2_4154 0.86 +0.6
4,836,089 + Pf6N2E2_4154 0.86 -0.7
4,836,089 + Pf6N2E2_4154 0.86 -0.2
4,836,089 + Pf6N2E2_4154 0.86 -0.5
4,836,090 - Pf6N2E2_4154 0.86 +1.2
4,836,090 - Pf6N2E2_4154 0.86 -1.5
4,836,090 - Pf6N2E2_4154 0.86 -0.3
4,836,090 - Pf6N2E2_4154 0.86 +0.7
4,836,090 - Pf6N2E2_4154 0.86 +0.4
4,836,090 - Pf6N2E2_4154 0.86 -0.0
4,836,102 - Pf6N2E2_4154 0.87 +0.5
4,836,327 + +0.0
4,836,327 + +0.6
4,836,327 + -0.3
4,836,327 + +0.2
4,836,327 + -0.7
4,836,328 - +0.1
4,836,328 - -0.5
4,836,331 + +0.3
4,836,331 + +0.2
4,836,332 - +0.2
4,836,353 - -0.5
4,836,382 + -0.0
4,836,382 + +0.3
4,836,382 + -0.2
4,836,425 - +0.6
4,836,436 - -1.3
4,836,482 + -0.1
4,836,557 + -0.5
4,836,730 + Pf6N2E2_4155 0.32 -0.8
4,836,730 + Pf6N2E2_4155 0.32 -0.1
4,836,731 - Pf6N2E2_4155 0.32 -0.4
4,836,731 - Pf6N2E2_4155 0.32 +0.4
4,836,862 + Pf6N2E2_4155 0.49 +0.0
4,836,862 + Pf6N2E2_4155 0.49 +0.2
4,836,862 + Pf6N2E2_4155 0.49 +0.3
4,836,862 + Pf6N2E2_4155 0.49 -1.1
4,836,862 + Pf6N2E2_4155 0.49 -0.2
4,836,863 - Pf6N2E2_4155 0.49 -0.1
4,836,863 - Pf6N2E2_4155 0.49 +1.6
4,836,894 - Pf6N2E2_4155 0.53 +0.1
4,836,894 - Pf6N2E2_4155 0.53 +0.5
4,836,899 + Pf6N2E2_4155 0.54 -0.4
4,837,040 + Pf6N2E2_4155 0.72 -1.4
4,837,040 + Pf6N2E2_4155 0.72 -0.8
4,837,041 - Pf6N2E2_4155 0.72 -0.6
4,837,041 - Pf6N2E2_4155 0.72 -0.3
4,837,074 - Pf6N2E2_4155 0.76 -0.2
4,837,074 - Pf6N2E2_4155 0.76 -1.9
4,837,136 + Pf6N2E2_4155 0.84 -0.4
4,837,136 + Pf6N2E2_4155 0.84 -1.1
4,837,136 + Pf6N2E2_4155 0.84 -1.3
4,837,136 + Pf6N2E2_4155 0.84 -0.7
4,837,136 + Pf6N2E2_4155 0.84 +0.4
4,837,136 + Pf6N2E2_4155 0.84 +0.7
4,837,136 + Pf6N2E2_4155 0.84 -0.1
4,837,136 + Pf6N2E2_4155 0.84 -0.1
4,837,137 - Pf6N2E2_4155 0.84 -0.7
4,837,137 - Pf6N2E2_4155 0.84 +0.3
4,837,137 - Pf6N2E2_4155 0.84 -1.3
4,837,137 - Pf6N2E2_4155 0.84 -0.2
4,837,137 - Pf6N2E2_4155 0.84 -1.0
4,837,137 - Pf6N2E2_4155 0.84 -0.7
4,837,137 - Pf6N2E2_4155 0.84 +0.6
4,837,158 + Pf6N2E2_4155 0.87 -0.1
4,837,159 - Pf6N2E2_4155 0.87 +1.1
4,837,231 + -0.0
4,837,231 + -0.4
4,837,232 - +1.8
4,837,232 - -0.3
4,837,232 - +1.3
4,837,232 - -1.1
4,837,232 - +0.3
4,837,273 + -0.1
4,837,274 - -0.4

Or see this region's nucleotide sequence